Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008055.1

Orthogroup ID

OG0008516

Physical Location & Seq

Genomic Coordinates Forward (+)

12525 .. 14217

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008055.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgtcatcgggctcttcagctacggcggcggcggcggcggcgacggagacgtcgaccgagtcacgcgcgccgcttctgcttccccggcaggggagcgacggccgtgacttgtcggagctcggctccccgacccgcccggccacgctggccatgctgctgggccgggccacgggccggcgcgggccgtccatgctggtgagggagacggctgcgcgtgagctggacgagcggcgcgccgactgggggtactcgaagccggtggtggcgctggacatgatgtggaacacggccttcgtggtggtctcggtggtgatgctgattctgacccgagacgaggacccgaacacgccgatccggctctggatctgcggctacgcgctgcagtgctttgtccacgtggcgctggtgtggattgagtaccggaggaggaatacgaggagagggaggagagggccggagacgcagcagagctccgaagctgccgaggctaatgatactgatgatgatgaaacagctacggatttgggggttccgagtcgttccagtttctctaaacgatgtgaatcagtcaatacaatggcatcctttctctggtggatagttggcttttattgggtagtctccggtggtgatttgctcctgcaaaatgctccgcgtttgtactggttgtctgtggttttcctgagagataaacgtttcggagcagagagaaaagcttctctctgtacgttcagcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

246

Amino Acids

27.32

Weight (kDa)

8.41

Isoelectric Point (pI)

58.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68070 AT2G01735 AT2G01735
fragaria_vesca	FvH4_4g33530 FvH4_5g19942 FvH4_6g33182
malus_domestica	MD13G1020200.v1.1 MD16G1018400.v1.1
prunus_persica	Prupe.1G333500_v2.0.a1 Prupe.1G333500_v2.0.a1
pyrus_communis	pycom16g01680
rosa_chinensis	RchiOBHm_Chr4g0443041
rosa_laevigata	RLG00000005960
rosa_multiflora	Rmu_co8232139.1_g000001 Rmu_sc0008055.1_g000003 Rmu_sc0015292.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383670
rosa_rugosa	Rorug04G0344000
rosa_samantha	Rh4AG398200 Rh4BG409700 Rh4CG425200 Rh4DG404500
rosa_wichuraiana	Rw4G034310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AatII	GACGTC	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	53
AccII	CGCG	7 cut(s)	66, 68, 180, 214, 234, 377, 655
AclI	AACGTT	1 cut(s)	694
AclWI	GGATC	2 cut(s)	346, 371
AcoI	YGGCCR	3 cut(s)	100, 138, 147
AcvI	CACGTG	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	4 cut(s)	248, 419, 662, 727
AfiI	CCNNNNNNNGG	7 cut(s)	89, 90, 169, 174, 243, 334, 591
AluBI	AGCT	7 cut(s)	20, 118, 220, 471, 479, 515, 716
AluI	AGCT	7 cut(s)	20, 118, 220, 471, 479, 515, 716
Alw21I	GWGCWC	2 cut(s)	120, 473
Alw26I	GTCTC	6 cut(s)	41, 197, 307, 324, 452, 625
AlwI	GGATC	2 cut(s)	346, 371
AlwNI	CAGNNNCTG	1 cut(s)	738
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	9 cut(s)	100, 138, 147, 160, 165, 172, 182, 288, 452
ApeKI	GCWGC	5 cut(s)	154, 209, 379, 463, 479
AscI	GGCGCGCC	1 cut(s)	232
Asp700I	GAANNNNTTC	1 cut(s)	715
AspLEI	GCGC	9 cut(s)	68, 70, 180, 214, 234, 236, 268, 379, 403
AspS9I	GGNCC	6 cut(s)	160, 165, 172, 182, 337, 452
AsuC2I	CCSGG	3 cut(s)	85, 137, 164
AsuHPI	GGTGA	3 cut(s)	208, 322, 641
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	337
BalI	TGGCCA	1 cut(s)	149
BanII	GRGCYC	3 cut(s)	14, 120, 473
BbrPI	CACGTG	1 cut(s)	397
Bbv12I	GWGCWC	2 cut(s)	120, 473
BbvI	GCAGC	5 cut(s)	141, 196, 366, 466, 475
BceAI	ACGGC	6 cut(s)	39, 87, 115, 169, 222, 303
BcnI	CCSGG	3 cut(s)	85, 137, 164
BcoDI	GTCTC	6 cut(s)	41, 197, 307, 324, 452, 625
BfmI	CTRYAG	1 cut(s)	380
BfoI	RGCGCY	2 cut(s)	269, 404
BglI	GCCNNNNNGGC	2 cut(s)	146, 355
Bme1390I	CCNGG	3 cut(s)	85, 137, 164
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	6 cut(s)	160, 165, 172, 182, 337, 452
BmiI	GGNNCC	3 cut(s)	124, 339, 531
BmrFI	CCNGG	3 cut(s)	85, 137, 164
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	2 cut(s)	303, 590
BmuI	ACTGGG	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpuMI	CCSGG	3 cut(s)	85, 137, 164
BsaAI	YACGTR	1 cut(s)	397
BsaBI	GATNNNNATC	1 cut(s)	562
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	3 cut(s)	83, 168, 483
BsaWI	WCCGGW	2 cut(s)	420, 623
Bsc4I	CCNNNNNNNGG	7 cut(s)	89, 90, 169, 174, 243, 334, 591
Bse118I	RCCGGY	2 cut(s)	174, 256
Bse1I	ACTGG	3 cut(s)	245, 543, 668
Bse8I	GATNNNNATC	1 cut(s)	562
BseDI	CCNNGG	3 cut(s)	83, 168, 483
BseGI	GGATG	1 cut(s)	581
BseJI	GATNNNNATC	1 cut(s)	562
BseLI	CCNNNNNNNGG	7 cut(s)	89, 90, 169, 174, 243, 334, 591
BseMII	CTCAG	1 cut(s)	674
BseNI	ACTGG	3 cut(s)	245, 543, 668
BsePI	GCGCGC	2 cut(s)	66, 232
BseRI	GAGGAG	3 cut(s)	439, 451, 460
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	5 cut(s)	141, 196, 366, 466, 475
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	7 cut(s)	66, 68, 180, 214, 234, 377, 655
Bsh1285I	CGRYCG	2 cut(s)	57, 103
BshFI	GGCC	9 cut(s)	102, 140, 149, 162, 167, 174, 184, 290, 454
BsiEI	CGRYCG	2 cut(s)	57, 103
BsiHKAI	GWGCWC	2 cut(s)	120, 473
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	9 cut(s)	85, 137, 163, 175, 257, 355, 421, 455, 624
BslI	CCNNNNNNNGG	7 cut(s)	89, 90, 169, 174, 243, 334, 591
BsmAI	GTCTC	6 cut(s)	41, 197, 307, 324, 452, 625
BsmBI	CGTCTC	4 cut(s)	41, 197, 324, 452
BsnI	GGCC	9 cut(s)	102, 140, 149, 162, 167, 174, 184, 290, 454
Bso31I	GGTCTC	1 cut(s)	307
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	3 cut(s)	14, 120, 473
Bsp143I	GATC	2 cut(s)	351, 363
BspANI	GGCC	9 cut(s)	102, 140, 149, 162, 167, 174, 184, 290, 454
BspCNI	CTCAG	1 cut(s)	675
BspFNI	CGCG	7 cut(s)	66, 68, 180, 214, 234, 377, 655
BspLI	GGNNCC	3 cut(s)	124, 339, 531
BspMAI	CTGCAG	1 cut(s)	384
BspPI	GGATC	2 cut(s)	346, 371
BspQI	GCTCTTC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	307
BsrBI	CCGCTC	1 cut(s)	229
BsrFI	RCCGGY	2 cut(s)	174, 256
BsrI	ACTGG	3 cut(s)	245, 543, 668
BssAI	RCCGGY	2 cut(s)	174, 256
BssECI	CCNNGG	3 cut(s)	83, 168, 483
BssHII	GCGCGC	2 cut(s)	66, 232
BssMI	GATC	2 cut(s)	351, 363
BssNI	GRCGYC	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	50
BstBAI	YACGTR	1 cut(s)	397
BstC8I	GCNNGC	5 cut(s)	68, 147, 176, 182, 234
BstDEI	CTNAG	1 cut(s)	683
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	581
BstFNI	CGCG	7 cut(s)	66, 68, 180, 214, 234, 377, 655
BstH2I	RGCGCY	2 cut(s)	269, 404
BstHHI	GCGC	9 cut(s)	68, 70, 180, 214, 234, 236, 268, 379, 403
BstKTI	GATC	2 cut(s)	354, 366
BstMAI	GTCTC	6 cut(s)	41, 197, 307, 324, 452, 625
BstMBI	GATC	2 cut(s)	351, 363
BstMCI	CGRYCG	2 cut(s)	57, 103
BstSCI	CCNGG	3 cut(s)	83, 135, 162
BstSFI	CTRYAG	1 cut(s)	380
BstUI	CGCG	7 cut(s)	66, 68, 180, 214, 234, 377, 655
BstV1I	GCAGC	5 cut(s)	141, 196, 366, 466, 475
BstX2I	RGATCY	1 cut(s)	363
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	363
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	9 cut(s)	102, 140, 149, 162, 167, 174, 184, 290, 454
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	581
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	5 cut(s)	68, 147, 176, 182, 234
CaiI	CAGNNNCTG	1 cut(s)	738
CfoI	GCGC	9 cut(s)	68, 70, 180, 214, 234, 236, 268, 379, 403
Cfr10I	RCCGGY	2 cut(s)	174, 256
Cfr13I	GGNCC	6 cut(s)	160, 165, 172, 182, 337, 452
CseI	GACGC	1 cut(s)	469
Csp6I	GTAC	4 cut(s)	247, 418, 661, 726
CviAII	CATG	3 cut(s)	151, 190, 274
CviQI	GTAC	4 cut(s)	247, 418, 661, 726
DdeI	CTNAG	1 cut(s)	683
DpnI	GATC	2 cut(s)	353, 365
DpnII	GATC	2 cut(s)	351, 363
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	3 cut(s)	100, 138, 147
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Ecl136II	GAGCTC	2 cut(s)	118, 471
EclXI	CGGCCG	1 cut(s)	100
Eco24I	GRGCYC	3 cut(s)	14, 120, 473
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	337
Eco52I	CGGCCG	1 cut(s)	100
Eco53kI	GAGCTC	2 cut(s)	118, 471
Eco72I	CACGTG	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	327
EcoICRI	GAGCTC	2 cut(s)	118, 471
EcoO109I	RGGNCCY	1 cut(s)	337
EcoT38I	GRGCYC	3 cut(s)	14, 120, 473
Esp3I	CGTCTC	4 cut(s)	41, 197, 324, 452
FaeI	CATG	3 cut(s)	154, 193, 277
FaiI	YATR	3 cut(s)	152, 191, 275
FatI	CATG	3 cut(s)	150, 189, 273
FauI	CCCGC	2 cut(s)	140, 173
FblI	GTMKAC	1 cut(s)	53
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	3 cut(s)	14, 120, 473
GlaI	GCGC	9 cut(s)	67, 69, 179, 213, 233, 235, 267, 378, 402
GsaI	CCCAGC	1 cut(s)	161
HaeII	RGCGCY	2 cut(s)	269, 404
HaeIII	GGCC	9 cut(s)	102, 140, 149, 162, 167, 174, 184, 290, 454
HapII	CCGG	9 cut(s)	85, 137, 163, 175, 257, 355, 421, 455, 624
HgaI	GACGC	1 cut(s)	469
HhaI	GCGC	9 cut(s)	68, 70, 180, 214, 234, 236, 268, 379, 403
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	3 cut(s)	154, 193, 277
Hin6I	GCGC	9 cut(s)	66, 68, 178, 212, 232, 234, 266, 377, 401
HinP1I	GCGC	9 cut(s)	66, 68, 178, 212, 232, 234, 266, 377, 401
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	4 cut(s)	59, 319, 535, 563
HpaII	CCGG	9 cut(s)	85, 137, 163, 175, 257, 355, 421, 455, 624
HphI	GGTGA	3 cut(s)	208, 322, 641
Hpy166II	GTNNAC	2 cut(s)	54, 394
Hpy188I	TCNGA	5 cut(s)	115, 324, 475, 534, 701
Hpy188III	TCNNGA	2 cut(s)	361, 682
Hpy8I	GTNNAC	2 cut(s)	54, 394
Hpy99I	CGWCG	3 cut(s)	46, 55, 101
HpyAV	CCTTC	1 cut(s)	301
HpyCH4IV	ACGT	4 cut(s)	50, 396, 694, 728
HpyCH4V	TGCA	2 cut(s)	382, 643
HpyF3I	CTNAG	1 cut(s)	683
HpySE526I	ACGT	4 cut(s)	50, 396, 694, 728
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	154, 193, 277
HspAI	GCGC	9 cut(s)	66, 68, 178, 212, 232, 234, 266, 377, 401
KroI	GCCGGC	1 cut(s)	174
KroNI	GCCGGC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	351, 363
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	7 cut(s)	93, 115, 128, 476, 642, 655, 701
Lsp1109I	GCAGC	5 cut(s)	141, 196, 366, 466, 475
LweI	GCATC	2 cut(s)	303, 590
MaeII	ACGT	4 cut(s)	50, 396, 694, 728
MaeIII	GTNAC	2 cut(s)	60, 104
MalI	GATC	2 cut(s)	353, 365
MbiI	CCGCTC	1 cut(s)	229
MboI	GATC	2 cut(s)	351, 363
MboII	GAAGA	1 cut(s)	6
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	3 cut(s)	14, 120, 473
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	68, 544
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	9 cut(s)	192, 328, 417, 420, 429, 434, 438, 443, 478
Mox20I	TGGCCA	1 cut(s)	149
MroNI	GCCGGC	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	715
MscI	TGGCCA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	9 cut(s)	85, 137, 163, 175, 257, 355, 421, 455, 624
MspR9I	CCNGG	3 cut(s)	85, 137, 164
MvnI	CGCG	7 cut(s)	66, 68, 180, 214, 234, 377, 655
NaeI	GCCGGC	1 cut(s)	176
NciI	CCSGG	3 cut(s)	85, 137, 164
NdeII	GATC	2 cut(s)	351, 363
NgoMIV	GCCGGC	1 cut(s)	174
NlaIII	CATG	3 cut(s)	154, 193, 277
NlaIV	GGNNCC	3 cut(s)	124, 339, 531
NmeAIII	GCCGAG	2 cut(s)	99, 508
NmuCI	GTSAC	2 cut(s)	60, 104
PalAI	GGCGCGCC	1 cut(s)	232
PauI	GCGCGC	2 cut(s)	66, 232
PciSI	GCTCTTC	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PdiI	GCCGGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	715
PfeI	GAWTC	2 cut(s)	319, 563
PflFI	GACNNNGTC	1 cut(s)	58
PleI	GAGTC	2 cut(s)	67, 543
PmaCI	CACGTG	1 cut(s)	397
PmlI	CACGTG	1 cut(s)	397
PpsI	GAGTC	2 cut(s)	67, 543
Ppu21I	YACGTR	1 cut(s)	397
PpuMI	RGGWCCY	1 cut(s)	337
Psp124BI	GAGCTC	2 cut(s)	120, 473
Psp1406I	AACGTT	1 cut(s)	694
Psp5II	RGGWCCY	1 cut(s)	337
PspCI	CACGTG	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	124, 339, 531
PspPI	GGNCC	6 cut(s)	160, 165, 172, 182, 337, 452
PspPPI	RGGWCCY	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	738
PsuI	RGATCY	1 cut(s)	363
PsyI	GACNNNGTC	1 cut(s)	58
PteI	GCGCGC	2 cut(s)	66, 232
RsaI	GTAC	4 cut(s)	248, 419, 662, 727
RsaNI	GTAC	4 cut(s)	247, 418, 661, 726
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	2 cut(s)	120, 473
SalI	GTCGAC	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	19
Sau3AI	GATC	2 cut(s)	351, 363
Sau96I	GGNCC	6 cut(s)	160, 165, 172, 182, 337, 452
SchI	GAGTC	2 cut(s)	68, 544
ScrFI	CCNGG	3 cut(s)	85, 137, 164
SduI	GDGCHC	3 cut(s)	14, 120, 473
SfaNI	GCATC	2 cut(s)	303, 590
SfcI	CTRYAG	1 cut(s)	380
SfiI	GGCCNNNNNGGCC	1 cut(s)	146
SgsI	GGCGCGCC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	194
SstI	GAGCTC	2 cut(s)	120, 473
StyD4I	CCNGG	3 cut(s)	83, 135, 162
TaiI	ACGT	4 cut(s)	53, 399, 697, 731
TaqI	TCGA	2 cut(s)	53, 251
TaqII	GACCGA	1 cut(s)	71
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	8 cut(s)	29, 32, 35, 38, 41, 73, 232, 372
TfiI	GAWTC	2 cut(s)	319, 563
TscAI	CASTG	1 cut(s)	389
TseFI	GTSAC	2 cut(s)	60, 104
TseI	GCWGC	5 cut(s)	154, 209, 379, 463, 479
Tsp45I	GTSAC	2 cut(s)	60, 104
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	2 cut(s)	59, 533
TspRI	CASTG	1 cut(s)	389
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	715
ZraI	GACGTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.