Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008435

Physical Location & Seq

Genomic Coordinates Reverse (-)

12016684 .. 12041543

Gene Structure 24860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5484 bp

ATGTCTACAGAAGCAACCGATTCTATGGCCACTCTTATCACCACTCTCTCCACTAGCTTCAGCCGAGTCCCTCCGGCGGCTGTTCCGGCCGTCTTGGATTGCATTCTGGCCTCTACCGGCGTATCTCGGTCGTCTCTGTTCGGTTCTCTTCTTGAGACTTTCACCAAGCTCTCTGAGGGTGTCATGAAAGACAACCAGAAGTTGGACTCCCATGACTGTAACTATCTGGCATCATTGGTTGGGGCACTTTGTCACCTCTTAAAGAAATTTGATACTAATCTTGGTGCTTTGGAATCATTTATCTGGAAATGTTTTCTTCCGTTGATAAAGATGGCACATATGTTCAGCCGCGATATGCTTAACCAGATTACAGAATCATTTATTAATGCTGTGATTGAGACAAACAGCTGGGTAGTTCTGGAGGCAACACTGGTGCCAATTTTTCTAAGATTAGTTGCCAGTTCTATTGGTATGCCTGAAAAGGAAGTATCAGATACTTTTCAGTTGATTTTGGGATCTAATGACCGGGTAAATCATATGGAAATGAGTACAAATCACGTCATTTCCCCTCCTGGATCACCTTCACTGCCAATTTCATGCCACATCCTAACCTTAATGCTTGATGCTGTCCTTCAAAGCAAGAAAACAGCTGCCTCTACAGAATCAACAATTGAAAATGGGTGTTTTGATGATCAAAATTTTGTTGGTAAATTGACTTGGGGTCTTTGTAGGTTAACTGAACAATTGCTTTTACAAAATTTGGAATACCGCTCCTGTGCTACTGCCTTTCTTCTCCCAATCATTTTCAAAGCATTTTCTTCTTATCACTCTTTTCAAAACTCTATAGATGGTCAGGTCTCTACACTATCAAGGAACAATTTCTTTATGAAGGTTTGGAAGTGCTGTGGGACACTGTTTTCTCTTGGAACTGTGGAGAGAAGAGATGCTTTTGGTGTACTCTCCCTGTACCTGTCTTTTTTTCCTTTTACAGAAAAAACTCAAGATTCTGACCTGAGTGATAAATTGGAATGTTTTGATATAAGAGCTGAAACAGAATTTTGGGACGAGATTAAAAGTGGCTTGGTTGATAAGGAGAGTTTAGTGAGGAAGCAATCGTTACAGATCTTAAAGATAGCACTACACATAAATGGAGCAGCTCAATCCTCCGGTGTTCCAGAGGATATATCGGCTGAAAATAAGTCGATGCCTCAAGGCATGACAAAGAGGGAGCTGTGGGCTGATAAGGAAGCTAAATCGTTGGGTGTGGGGAAAATATGTTGCCTAGTCGAGTCTTCCGTGGAAAGCCAGAACAAGTGGGAGGCATTTGTGCTCCTGTATGAAATGCTTGAAGAATATGGAACTCACCTCGTTGAAGCAGCTTGGAATTACCAGATATCCTTGTTACTTCAAAATTCTAGCTCAGATGCTAATAATACAATCTCTGTCAGTGGAGCACTTCATCAAAACCAGATCGAAAATCCAGGAGAAATCTTTAACTGGCTAGCAATTTTGTGGGAAAGGGGCTTTAATCATGACAACCCGCTAGTTAGGTGCTTGATCATGCAGTCATTTTTGGGGATTGATTGGATGCATTCCGGCACACCAGCTAGATCGGTGCCTAGACATTTTGTTCTTGGTTCATTTATTCAAGGGTTAAATGATCCTGTGCATCACAAAGAATTTGGTGTAAAAGGAATATACTCCTCAATGACCATACGAGGTGCAGCCAACTTTCTAAACAAATATACAAGTTTTCTGAATGTGAGGAAGTGCATTATGTTTCTGAGTGACTTAGCATCAGCTGCTAAGCAGCAACCTCTTGGTAGAGTTGGATTGATGTGCCTTGCTGAATGCATTTCTTCTGCTGCTCGTCAAGTTGGAAAGAATAATAATGAAACTGATGCTCAGTGCTTTGAAGATGGATTTCCTGACATGATCCAAGTGGGAAAGGCTTCTTACAATGACAAAATTGTTTTGCTTGATGCCTTGAGATTTATTATTGAGAGCAGCAAACAACATTTCAATTCTAATTATCGTCTTCAAGTTTGTGAGAAAGTCCTCGAGTCTGCTGCTTCAGTGGTGTGCACATGTGATCTGCCTCTTGATGTACTTTTGCACTTCATTTCAACATTTCCATGGGAATTCACTGATCACGGTGGTCCCTTAAGACAGAAAGTACAACAATGGCTTATGGATGGTAATCATTGCAGTGTCAACTGCTGCAGTACTGAAATAGAGCTCCTCAAGAGTCTTCATGACTTCCCAAATAGGTTTACAAGCACTTGCAATGATGATGCTTCAACCACTTTTGACGATGAAGACTTGGATGCATGGGAATTTGAAGCGAAGCGGTGGGCTAGAGTGCTCTTTATTGCATGTGAGGAGGAATATCAGTTGTTACCTATACTGACGTTTATTCAAAATCATGGTAGTGATGTCTGCAAACAATACAATAATATGGACCTATTTCCTGTGAAGTTTCTCATCCTCATCTTGAGTCTGGTTCTGGAGCTTCAGATGATGCAAGAAAGAGTTGCTAAACATGGTTCTGAGCTTCGAAGCAAAACAGAATTTTTTGTGCCAGAATCAATGAATCAATTTAATCATGCAGATGTTCCTAATTTATATCAAAAGTTCACTGCCATTTTTCTTCTTTTACTGGAGGAGTTAGTCTCTTTTGCAAACCTGTCTTGTTCCATATTCTCAAATAACAATACGTCTAAGATGAGAGATGCAACCCTTCCTGGTTCTGTAACAGGAAAACTTGGAGGACCTAGTCAACGCCGACTGTCATCTTCTACCACCAGTGCTGTATTGCGAGCAATTATGTCCATGAAGGCTGTTGCAACTATCACCTCATTCTGTGCACGAGTTAAAACTGATGTTTCCCTTGAACCTGCTATTAATTTTTTGTGGGATTTCTACTGGAAGACTATTTCGTCTCCAGCTTGTGATTCAGAGACTGGAGCAGAAATACATCTTGCAGCATATGAAGCGTTAGCCCCTACTCTCACAGGACTAGCGTCTGTGTGTTCTCCTCACACTTTGGATCCACATAAGAAATATCACAGCTCGTTACTATCAGATGGCAAACCTTTTTTGGATTCTTTGGTGCTAAATTTTCTTCAAAACACAAATAAACTCATTACAGTAGGAGTATTTACACGATCTCGACGTGCAGTTTTAATGAATTGGAAGTGGATTTGCCTAGAATCTCTATTGTCGATTCCTTGCCATGCTCATAGGAACGGGTTTCTTCTAGAGGAAAATAATTATGTCTTCTCAGGTGCTGCTCTCAGATGTATATTTTCTGATATTCTTGAGAGCCTTGAGAATGCTGGTGAAGGTTCTGTTTTACCGATGCTCAGATCAGTTCGACTAGTTTTGGACCTACTTGCCCATGGAAAGTCTGGCTCACTTGTCTGCTTCTGTGATGGGGTGGATGCCCAGATGCTGTGGCATTTGGTTCATTCTTCTTGGATATTGCATGTCAGTTGCAACAAGCGGAAGGTTGCACCTATTGCTGCACTTTTGTCTTCTGTTCTCCATTCATCTCTATTTAGTGACGAGAGCATGCATATAACTGATGGTGCACCTGGGCCTCTGAAGTGGTTTGTTGAAAAAATTCTTGAGGAAGGGACGAAAAGTCCCCGGACAATTCGTCTTGCTGCATTACACTTAACAGGGCTGTGGCTATCGTATCCTAGGATTATACAGTACTATGTGAAGGAGCTGAAGCTGCTGTCCCTTCATGGTTCTGTTGCTTTTGATGAGGACTTCGAAGGTGAACTAGCTGATAATCGAGATACCAGGGCTGAAGTTTCTTTATTGGCAAAAGGCCCTGATCTGGAGCTGACCAAAGCATTTATCAATACAGAGTTGTATGCACGGGCCTCTGTTGCTGTTCTATTCTACAAGCTAGCAGACATGGCCATCATGGTGGGATCAACTAATGAAAATGCAGATTGCTATGCAGCTTTGGAATCTGGAAAAATGTTTTTGCTTGAGCTTCTTGATTCCGCGGTAAACGACAAGGATCTTGCAAAAGAGTTGTATAAGAAGTATAGTGCAATTCATAGAAGAAAGGTACGGGCATGGCAAATGATATGTATTTTGTCACCTTTTGTCTGTGAGGATATAGTCTCAGAAGTTGCACGTTGCTTGCACACATCCCTCTATAGGAACAACTTACCTGCAGTTCGTCAATATTTGGAAACATTTGCAATTAATATGTACTTAAAGTTTCCACCACTGGTTGAGGAGCAACTAGTTCCTATGTTAAGAGATTATGACATGAGACCTCAGGCTCTCTCTTCTTATGTATTTATAGCAGCTAACGTAATCCTCCATGCATCTCAACCTGTTCAACACCGACATCTGAATGAATTACTTCCTCCTATAGTTCCACTATTAACCTCACATCACCACAGTCTACGTGGTTTCACCCAGTTGCTGGTTTACCAAGTTCTTTGCAAATTGTTCCCTCCCATGGATTCTGGAGCCTCTGAATGTATGACTTTAGAGAAGAGATGTTTTCAGGATCTGAAATCCTACCTCGCAAAGAACTCTGATTGTACGCGCTTACGACAATCAATGGAAGGGTATCTTGATGCCTACAGTCCCCTTAGCTCGATCACTCCTGCGGGTGTGTTCATCAACCGTGTTGAGGACATCGAGTTTGAATGTGTATCAATATCCCTTATGGAGCAAGTGCTCAACTTTTTGAATGATGTGAGGGAAAACCTTCGAAATTCAATGGCAAAGGATGTTGTGACCATTAAGAATGAGAGTTTGAGATCTGATGGAGATCAAGACCGCATGGGGATACTGTCTAATGCTAATGAAAGACAATTGTGTACCCAGCTGCCTAAAGATATCTCACTAGATTTTCAGAAGAAGATTACTCTATCTAAACATGAGAAGCAAGACGACGTAAATGAATTAGAAAAGGACGATAAGCTTCTTGCTCAGGTGCTTCAGTCTAGAACTCTTGGAATAGAAAGAGAGAGATCAAGTAGACAACATCTTATCCTTGTAGCATCTCTGCTTGATCGGATACCTAACCTAGCTGGCCTTGCTCGGACTTGTGAGGTATTTAAAGTATCAAGCTTGGCCATTGCGGATAAAAACGTATTACATGACAAACAGTTCCAACTCATCAGTGTGACCGCTGAGAAGTGGGTTCCTATCATCGAAGTCCCAGTGAATAGTTTGAAGATTTTCCTTCAGAAAAAGAAACAAGAAGGTTTCTCAATTTTAGGACTAGAGCAGACTGCAAACAGTATACCTCTTGATCAATATATCTTTCCTAAAGATACAGTACTGGTTCTTGGGCGAGAGAAGGAAGGTATACCAGTTGATATAATACATTTTCTAGATGCTTGCCTTGAAATTCCACAGTTGGGAGTTGTAAGATCTCTCAATGTTCATGTCAGTGGTGCCATTGCACTCTGGGAATATACTAGACAACAGAGATCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008649 GO:0008757 GO:0009451 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016072 GO:0016423 GO:0016435 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030488 GO:0031167 GO:0031323 GO:0031326 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070039 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:0140102 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

1828

Amino Acids

204.94

Weight (kDa)

5.81

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	1676 - 1818	6.4e-25	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17610 AT4G17610 AT4G17610
fragaria_vesca	FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370
malus_domestica	MD04G1055600.v1.1
prunus_persica	Prupe.5G055400_v2.0.a1 Prupe.5G055400_v2.0.a1
pyrus_communis	pycom04g04890
rosa_chinensis	RchiOBHm_Chr7g0205631
rosa_laevigata	RLG00000003369
rosa_multiflora	Rmu_ssc0000482.1_g000025
rosa_roxburghii	Rroxscaffold_3G00252130
rosa_rugosa	Rorug07G0092300
rosa_samantha	Rh7AG223100 Rh7AG230100 Rh7BG218100 Rh7CG236300 Rh7DG230000
rosa_wichuraiana	Rw7G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2938
Acc36I	ACCTGC	2 cut(s)	2905, 4201
AccB1I	GGYRCC	3 cut(s)	433, 1615, 5438
AccB7I	CCANNNNNTGG	2 cut(s)	202, 4453
AccBSI	CCGCTC	1 cut(s)	771
AccI	GTMKAC	5 cut(s)	5, 4432, 5017, 5284, 5350
AccII	CGCG	3 cut(s)	351, 4022, 4579
AcoI	YGGCCR	4 cut(s)	27, 87, 3930, 5112
AcuI	CTGAAG	8 cut(s)	43, 2058, 2498, 3626, 3755, 3837, 4961, 5210
AfiI	CCNNNNNNNGG	8 cut(s)	76, 202, 3847, 4179, 4453, 4489, 4666, 5402
AflII	CTTAAG	1 cut(s)	2164
AflIII	ACRYGT	1 cut(s)	2087
AhdI	GACNNNNNGTC	3 cut(s)	720, 3645, 3660
AhlI	ACTAGT	2 cut(s)	3379, 4267
AjiI	CACGTC	2 cut(s)	559, 3176
AjnI	CCWGG	5 cut(s)	571, 1480, 2743, 3595, 3809
Alw21I	GWGCWC	8 cut(s)	1332, 1456, 2087, 2241, 2367, 2869, 3595, 4716
Alw26I	GTCTC	9 cut(s)	138, 149, 392, 862, 2677, 2946, 2954, 4147, 4291
Alw44I	GTGCAC	3 cut(s)	2083, 2865, 3591
AlwNI	CAGNNNCTG	5 cut(s)	2963, 3290, 3454, 4453, 4543
Ama87I	CYCGRG	1 cut(s)	2060
AoxI	GGCC	9 cut(s)	27, 87, 108, 3599, 3838, 3891, 3930, 5071, 5112
ApaLI	GTGCAC	3 cut(s)	2083, 2865, 3591
ArsI	GACNNNNNNTTYG	2 cut(s)	4661, 4693
AseI	ATTAAT	3 cut(s)	384, 2904, 4227
Asp700I	GAANNNNTTC	6 cut(s)	878, 1951, 3624, 4389, 4743, 5219
AspA2I	CCTAGG	1 cut(s)	3704
AspLEI	GCGC	1 cut(s)	4581
AspS9I	GGNCC	7 cut(s)	2159, 2461, 2771, 3388, 3599, 3839, 3891
AsuC2I	CCSGG	2 cut(s)	527, 3652
AsuII	TTCGAA	3 cut(s)	2557, 3780, 4747
AsuNHI	GCTAGC	2 cut(s)	1501, 3919
AvaI	CYCGRG	1 cut(s)	2060
AvaII	GGWCC	4 cut(s)	2159, 2461, 2771, 3388
AvrII	CCTAGG	1 cut(s)	3704
AxyI	CCTNAGG	1 cut(s)	4302
BaeGI	GKGCMC	4 cut(s)	247, 2087, 2869, 3595
BaeI	ACNNNNGTAYC	2 cut(s)	105, 138
BalI	TGGCCA	3 cut(s)	29, 3932, 5114
BamHI	GGATCC	1 cut(s)	3049
BanI	GGYRCC	3 cut(s)	433, 1615, 5438
BanII	GRGCYC	1 cut(s)	2241
BauI	CACGAG	1 cut(s)	2868
BbsI	GAAGAC	7 cut(s)	1284, 2030, 2243, 2325, 2936, 3271, 3528
Bbv12I	GWGCWC	8 cut(s)	1332, 1456, 2087, 2241, 2367, 2869, 3595, 4716
BccI	CCATC	9 cut(s)	325, 842, 1913, 2189, 3080, 3428, 3581, 3941, 4796
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	2051, 2085
BciT130I	CCWGG	5 cut(s)	573, 1482, 2745, 3597, 3811
BciVI	GTATCC	3 cut(s)	3711, 4818, 5049
BclI	TGATCA	4 cut(s)	691, 1557, 2149, 5293
BcnI	CCSGG	2 cut(s)	527, 3652
BcoDI	GTCTC	9 cut(s)	138, 149, 392, 862, 2677, 2946, 2954, 4147, 4291
BcuI	ACTAGT	2 cut(s)	3379, 4267
BfmI	CTRYAG	8 cut(s)	6, 657, 843, 2221, 4177, 4194, 4398, 4615
BfrI	CTTAAG	1 cut(s)	2164
BfuAI	ACCTGC	2 cut(s)	2905, 4201
BfuI	GTATCC	3 cut(s)	3711, 4818, 5049
BglII	AGATCT	3 cut(s)	1122, 4796, 5414
BlnI	CCTAGG	1 cut(s)	3704
BlpI	GCTNAGC	1 cut(s)	1806
BmcAI	AGTACT	3 cut(s)	2227, 3719, 5322
Bme1390I	CCNGG	7 cut(s)	527, 573, 1482, 2745, 3597, 3652, 3811
Bme18I	GGWCC	4 cut(s)	2159, 2461, 2771, 3388
BmeRI	GACNNNNNGTC	3 cut(s)	720, 3645, 3660
BmeT110I	CYCGRG	1 cut(s)	2060
BmgBI	CACGTC	2 cut(s)	559, 3176
BmgT120I	GGNCC	7 cut(s)	2159, 2461, 2771, 3388, 3599, 3839, 3891
BmiI	GGNNCC	7 cut(s)	435, 1617, 2161, 3051, 4501, 5184, 5440
BmrFI	CCNGG	7 cut(s)	527, 573, 1482, 2745, 3597, 3652, 3811
BmrI	ACTGGG	3 cut(s)	4441, 5195, 5473
BmtI	GCTAGC	2 cut(s)	1505, 3923
BmuI	ACTGGG	3 cut(s)	4441, 5195, 5473
BoxI	GACNNNNGTC	1 cut(s)	3022
BpiI	GAAGAC	7 cut(s)	1284, 2030, 2243, 2325, 2936, 3271, 3528
BplI	GAGNNNNNCTC	2 cut(s)	2657, 2689
BpmI	CTGGAG	7 cut(s)	440, 2528, 2681, 2928, 2985, 3869, 4518
Bpu10I	CCTNAGC	2 cut(s)	4625, 4968
Bpu1102I	GCTNAGC	1 cut(s)	1806
Bpu14I	TTCGAA	3 cut(s)	2557, 3780, 4747
BpuMI	CCSGG	2 cut(s)	527, 3652
BsaAI	YACGTR	1 cut(s)	4436
BsaBI	GATNNNNATC	3 cut(s)	276, 2199, 4806
BsaI	GGTCTC	2 cut(s)	862, 4291
BsaJI	CCNNGG	9 cut(s)	1296, 2135, 3400, 3596, 3650, 3704, 3810, 4020, 4488
BsaWI	WCCGGW	1 cut(s)	1166
Bsc4I	CCNNNNNNNGG	8 cut(s)	76, 202, 3847, 4179, 4453, 4489, 4666, 5402
Bse118I	RCCGGY	1 cut(s)	116
Bse21I	CCTNAGG	1 cut(s)	4302
Bse3DI	GCAATG	4 cut(s)	2203, 2293, 5115, 5442
Bse8I	GATNNNNATC	3 cut(s)	276, 2199, 4806
BseBI	CCWGG	5 cut(s)	573, 1482, 2745, 3597, 3811
BseDI	CCNNGG	9 cut(s)	1296, 2135, 3400, 3596, 3650, 3704, 3810, 4020, 4488
BseGI	GGATG	8 cut(s)	603, 1593, 2200, 2332, 2484, 3448, 4169, 4771
BseJI	GATNNNNATC	3 cut(s)	276, 2199, 4806
BseLI	CCNNNNNNNGG	8 cut(s)	76, 202, 3847, 4179, 4453, 4489, 4666, 5402
BseMI	GCAATG	4 cut(s)	2203, 2293, 5115, 5442
BseRI	GAGGAG	6 cut(s)	1693, 2231, 2396, 2678, 3027, 4274
BseSI	GKGCMC	4 cut(s)	247, 2087, 2869, 3595
BseX3I	CGGCCG	1 cut(s)	87
BseYI	CCCAGC	2 cut(s)	408, 4860
BsgI	GTGCAG	3 cut(s)	1743, 3198, 3510
Bsh1236I	CGCG	3 cut(s)	351, 4022, 4579
Bsh1285I	CGRYCG	2 cut(s)	90, 131
BshFI	GGCC	9 cut(s)	29, 89, 110, 3601, 3840, 3893, 3932, 5073, 5114
BshNI	GGYRCC	3 cut(s)	433, 1615, 5438
BsiEI	CGRYCG	2 cut(s)	90, 131
BsiHKAI	GWGCWC	8 cut(s)	1332, 1456, 2087, 2241, 2367, 2869, 3595, 4716
BsiHKCI	CYCGRG	1 cut(s)	2060
BsiSI	CCGG	7 cut(s)	74, 86, 117, 526, 1167, 1596, 3652
BslFI	GGGAC	9 cut(s)	53, 922, 1076, 2145, 3633, 3652, 3730, 4605, 5183
BslI	CCNNNNNNNGG	8 cut(s)	76, 202, 3847, 4179, 4453, 4489, 4666, 5402
BsmAI	GTCTC	9 cut(s)	138, 149, 392, 862, 2677, 2946, 2954, 4147, 4291
BsmBI	CGTCTC	2 cut(s)	138, 2946
BsmFI	GGGAC	9 cut(s)	53, 922, 1076, 2145, 3633, 3652, 3730, 4605, 5183
BsmI	GAATGC	4 cut(s)	102, 1591, 1856, 3340
BsnI	GGCC	9 cut(s)	29, 89, 110, 3601, 3840, 3893, 3932, 5073, 5114
Bso31I	GGTCTC	2 cut(s)	862, 4291
BsoBI	CYCGRG	1 cut(s)	2060
Bsp119I	TTCGAA	3 cut(s)	2557, 3780, 4747
Bsp1286I	GDGCHC	9 cut(s)	247, 1332, 1456, 2087, 2241, 2367, 2869, 3595, 4716
Bsp1720I	GCTNAGC	1 cut(s)	1806
Bsp19I	CCATGG	3 cut(s)	2135, 3400, 4488
BspANI	GGCC	9 cut(s)	29, 89, 110, 3601, 3840, 3893, 3932, 5073, 5114
BspFNI	CGCG	3 cut(s)	351, 4022, 4579
BspHI	TCATGA	3 cut(s)	183, 1531, 2254
BspLI	GGNNCC	7 cut(s)	435, 1617, 2161, 3051, 4501, 5184, 5440
BspMAI	CTGCAG	2 cut(s)	2225, 4198
BspMI	ACCTGC	2 cut(s)	2905, 4201
BspOI	GCTAGC	2 cut(s)	1505, 3923
BspT104I	TTCGAA	3 cut(s)	2557, 3780, 4747
BspT107I	GGYRCC	3 cut(s)	433, 1615, 5438
BspTI	CTTAAG	1 cut(s)	2164
BspTNI	GGTCTC	2 cut(s)	862, 4291
BsrBI	CCGCTC	1 cut(s)	771
BsrDI	GCAATG	4 cut(s)	2203, 2293, 5115, 5442
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	9 cut(s)	1296, 2135, 3400, 3596, 3650, 3704, 3810, 4020, 4488
BssNAI	GTATAC	2 cut(s)	5285, 5351
BssSI	CACGAG	1 cut(s)	2868
BssT1I	CCWWGG	4 cut(s)	2135, 3400, 3704, 4488
Bst1107I	GTATAC	2 cut(s)	5285, 5351
Bst2BI	CACGAG	1 cut(s)	2868
Bst2UI	CCWGG	5 cut(s)	573, 1482, 2745, 3597, 3811
Bst6I	CTCTTC	4 cut(s)	153, 934, 4318, 4520
BstAFI	CTTAAG	1 cut(s)	2164
BstAPI	GCANNNNNTGC	2 cut(s)	1802, 3521
BstBAI	YACGTR	1 cut(s)	4436
BstBI	TTCGAA	3 cut(s)	2557, 3780, 4747
BstC8I	GCNNGC	7 cut(s)	1503, 2820, 3575, 3921, 4163, 5071, 5383
BstDSI	CCRYGG	5 cut(s)	1296, 2135, 3400, 4020, 4488
BstF5I	GGATG	8 cut(s)	603, 1593, 2200, 2332, 2484, 3448, 4169, 4771
BstFNI	CGCG	3 cut(s)	351, 4022, 4579
BstHHI	GCGC	1 cut(s)	4581
BstMAI	GTCTC	9 cut(s)	138, 149, 392, 862, 2677, 2946, 2954, 4147, 4291
BstMCI	CGRYCG	2 cut(s)	90, 131
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 1802, 2993, 3521, 3739, 3899, 3929, 5075
BstNI	CCWGG	5 cut(s)	573, 1482, 2745, 3597, 3811
BstNSI	RCATGY	4 cut(s)	2091, 2379, 3491, 3577
BstPAI	GACNNNNGTC	1 cut(s)	3022
BstSCI	CCNGG	7 cut(s)	525, 571, 1480, 2743, 3595, 3650, 3809
BstSFI	CTRYAG	8 cut(s)	6, 657, 843, 2221, 4177, 4194, 4398, 4615
BstSLI	GKGCMC	4 cut(s)	247, 2087, 2869, 3595
BstUI	CGCG	3 cut(s)	351, 4022, 4579
BstV2I	GAAGAC	7 cut(s)	1284, 2030, 2243, 2325, 2936, 3271, 3528
BstX2I	RGATCY	8 cut(s)	515, 1122, 3049, 4036, 4540, 4796, 5414, 5474
BstXI	CCANNNNNNTGG	1 cut(s)	3940
BstYI	RGATCY	8 cut(s)	515, 1122, 3049, 4036, 4540, 4796, 5414, 5474
BstZ17I	GTATAC	2 cut(s)	5285, 5351
BstZI	CGGCCG	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	4302
BsuI	GTATCC	3 cut(s)	3711, 4818, 5049
BsuRI	GGCC	9 cut(s)	29, 89, 110, 3601, 3840, 3893, 3932, 5073, 5114
BtgI	CCRYGG	5 cut(s)	1296, 2135, 3400, 4020, 4488
BtrI	CACGTC	2 cut(s)	559, 3176
BtsCI	GGATG	8 cut(s)	603, 1593, 2200, 2332, 2484, 3448, 4169, 4771
BtsI	GCAGTG	3 cut(s)	584, 2215, 2637
BveI	ACCTGC	2 cut(s)	2905, 4201
Cac8I	GCNNGC	7 cut(s)	1503, 2820, 3575, 3921, 4163, 5071, 5383
CaiI	CAGNNNCTG	5 cut(s)	2963, 3290, 3454, 4453, 4543
CciI	TCATGA	3 cut(s)	183, 1531, 2254
CfoI	GCGC	1 cut(s)	4581
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	7 cut(s)	2159, 2461, 2771, 3388, 3599, 3839, 3891
Cfr42I	CCGCGG	1 cut(s)	4023
CseI	GACGC	1 cut(s)	3012
DraI	TTTAAA	1 cut(s)	5098
DrdI	GACNNNNNNGTC	1 cut(s)	2938
DriI	GACNNNNNGTC	3 cut(s)	720, 3645, 3660
DseDI	GACNNNNNNGTC	1 cut(s)	2938
EaeI	YGGCCR	4 cut(s)	27, 87, 3930, 5112
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	4 cut(s)	153, 934, 4318, 4520
Eam1105I	GACNNNNNGTC	3 cut(s)	720, 3645, 3660
EarI	CTCTTC	4 cut(s)	153, 934, 4318, 4520
Ecl136II	GAGCTC	1 cut(s)	2239
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	4 cut(s)	2135, 3400, 3704, 4488
Eco24I	GRGCYC	1 cut(s)	2241
Eco31I	GGTCTC	2 cut(s)	862, 4291
Eco32I	GATATC	2 cut(s)	1395, 4876
Eco47I	GGWCC	4 cut(s)	2159, 2461, 2771, 3388
Eco52I	CGGCCG	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	2239
Eco57I	CTGAAG	8 cut(s)	43, 2058, 2498, 3626, 3755, 3837, 4961, 5210
Eco81I	CCTNAGG	1 cut(s)	4302
Eco88I	CYCGRG	1 cut(s)	2060
EcoICRI	GAGCTC	1 cut(s)	2239
EcoO109I	RGGNCCY	2 cut(s)	2771, 3839
EcoRI	GAATTC	1 cut(s)	2141
EcoRII	CCWGG	5 cut(s)	571, 1480, 2743, 3595, 3809
EcoRV	GATATC	2 cut(s)	1395, 4876
EcoT14I	CCWWGG	4 cut(s)	2135, 3400, 3704, 4488
EcoT22I	ATGCAT	5 cut(s)	1593, 1856, 2332, 3579, 4354
EcoT38I	GRGCYC	1 cut(s)	2241
ErhI	CCWWGG	4 cut(s)	2135, 3400, 3704, 4488
Esp3I	CGTCTC	2 cut(s)	138, 2946
FalI	AAGNNNNNCTT	4 cut(s)	931, 963, 4590, 4622
FaqI	GGGAC	9 cut(s)	53, 922, 1076, 2145, 3633, 3652, 3730, 4605, 5183
FauI	CCCGC	2 cut(s)	1548, 4636
FauNDI	CATATG	3 cut(s)	339, 537, 2989
FbaI	TGATCA	4 cut(s)	691, 1557, 2149, 5293
FblI	GTMKAC	5 cut(s)	5, 4432, 5017, 5284, 5350
FokI	GGATG	8 cut(s)	590, 1600, 2207, 2339, 2471, 3455, 4156, 4778
FriOI	GRGCYC	1 cut(s)	2241
GlaI	GCGC	1 cut(s)	4580
GsaI	CCCAGC	2 cut(s)	412, 4864
GsuI	CTGGAG	7 cut(s)	440, 2528, 2681, 2928, 2985, 3869, 4518
HaeIII	GGCC	9 cut(s)	29, 89, 110, 3601, 3840, 3893, 3932, 5073, 5114
HapII	CCGG	7 cut(s)	74, 86, 117, 526, 1167, 1596, 3652
HgaI	GACGC	1 cut(s)	3012
HhaI	GCGC	1 cut(s)	4581
Hin6I	GCGC	1 cut(s)	4579
HinP1I	GCGC	1 cut(s)	4579
HincII	GTYRAC	3 cut(s)	735, 2215, 2780
HindII	GTYRAC	3 cut(s)	735, 2215, 2780
HindIII	AAGCTT	2 cut(s)	4958, 5107
HpaI	GTTAAC	1 cut(s)	735
HpaII	CCGG	7 cut(s)	74, 86, 117, 526, 1167, 1596, 3652
Hpy99I	CGWCG	2 cut(s)	3177, 4934
HpyCH4IV	ACGT	9 cut(s)	558, 2411, 2717, 3175, 4156, 4338, 4435, 4932, 5130
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 1802, 2993, 3521, 3739, 3899, 3929, 5075
HpySE526I	ACGT	9 cut(s)	558, 2411, 2717, 3175, 4156, 4338, 4435, 4932, 5130
HspAI	GCGC	1 cut(s)	4579
Ksp22I	TGATCA	4 cut(s)	691, 1557, 2149, 5293
KspAI	GTTAAC	1 cut(s)	735
KspI	CCGCGG	1 cut(s)	4023
MaeII	ACGT	9 cut(s)	558, 2411, 2717, 3175, 4156, 4338, 4435, 4932, 5130
MbiI	CCGCTC	1 cut(s)	771
MfeI	CAATTG	3 cut(s)	669, 743, 4850
MflI	RGATCY	8 cut(s)	515, 1122, 3049, 4036, 4540, 4796, 5414, 5474
MhlI	GDGCHC	9 cut(s)	247, 1332, 1456, 2087, 2241, 2367, 2869, 3595, 4716
MlsI	TGGCCA	3 cut(s)	29, 3932, 5114
MluNI	TGGCCA	3 cut(s)	29, 3932, 5114
MlyI	GAGTC	6 cut(s)	75, 200, 1298, 2072, 2257, 2506
MmeI	TCCRAC	4 cut(s)	183, 1810, 1858, 5176
Mox20I	TGGCCA	3 cut(s)	29, 3932, 5114
Mph1103I	ATGCAT	5 cut(s)	1593, 1856, 2332, 3579, 4354
MroXI	GAANNNNTTC	6 cut(s)	878, 1951, 3624, 4389, 4743, 5219
MscI	TGGCCA	3 cut(s)	29, 3932, 5114
MslI	CAYNNNNRTG	9 cut(s)	1146, 2134, 2208, 2430, 2610, 3938, 4380, 5162, 5433
Msp20I	TGGCCA	3 cut(s)	29, 3932, 5114
MspA1I	CMGCKG	6 cut(s)	408, 650, 1802, 4022, 4864, 5171
MspCI	CTTAAG	1 cut(s)	2164
MspI	CCGG	7 cut(s)	74, 86, 117, 526, 1167, 1596, 3652
MspR9I	CCNGG	7 cut(s)	527, 573, 1482, 2745, 3597, 3652, 3811
MunI	CAATTG	3 cut(s)	669, 743, 4850
Mva1269I	GAATGC	4 cut(s)	102, 1591, 1856, 3340
MvaI	CCWGG	5 cut(s)	573, 1482, 2745, 3597, 3811
MvnI	CGCG	3 cut(s)	351, 4022, 4579
MwoI	GCNNNNNNNGC	8 cut(s)	86, 1802, 2993, 3521, 3739, 3899, 3929, 5075
NciI	CCSGG	2 cut(s)	527, 3652
NcoI	CCATGG	3 cut(s)	2135, 3400, 4488
NdeI	CATATG	3 cut(s)	339, 537, 2989
NheI	GCTAGC	2 cut(s)	1501, 3919
NlaIV	GGNNCC	7 cut(s)	435, 1617, 2161, 3051, 4501, 5184, 5440
NmeAIII	GCCGAG	1 cut(s)	89
NmuCI	GTSAC	6 cut(s)	251, 1787, 3563, 4116, 4771, 5164
NsiI	ATGCAT	5 cut(s)	1593, 1856, 2332, 3579, 4354
NspI	RCATGY	4 cut(s)	2091, 2379, 3491, 3577
NspV	TTCGAA	3 cut(s)	2557, 3780, 4747
PaeI	GCATGC	1 cut(s)	3577
PaeR7I	CTCGAG	1 cut(s)	2060
PagI	TCATGA	3 cut(s)	183, 1531, 2254
PciI	ACATGT	1 cut(s)	2087
PcsI	WCGNNNNNNNCGW	2 cut(s)	1293, 3172
PctI	GAATGC	4 cut(s)	102, 1591, 1856, 3340
PdmI	GAANNNNTTC	6 cut(s)	878, 1951, 3624, 4389, 4743, 5219
PflFI	GACNNNGTC	1 cut(s)	2775
PflMI	CCANNNNNTGG	2 cut(s)	202, 4453
PfoI	TCCNGGA	2 cut(s)	571, 1480
PleI	GAGTC	6 cut(s)	74, 200, 1297, 2071, 2256, 2505
PpsI	GAGTC	6 cut(s)	74, 200, 1297, 2071, 2256, 2505
Ppu21I	YACGTR	1 cut(s)	4436
PpuMI	RGGWCCY	1 cut(s)	2771
PscI	ACATGT	1 cut(s)	2087
PshAI	GACNNNNGTC	1 cut(s)	3022
PshBI	ATTAAT	3 cut(s)	384, 2904, 4227
Psp124BI	GAGCTC	1 cut(s)	2241
Psp5II	RGGWCCY	1 cut(s)	2771
Psp6I	CCWGG	5 cut(s)	571, 1480, 2743, 3595, 3809
PspFI	CCCAGC	2 cut(s)	408, 4860
PspGI	CCWGG	5 cut(s)	571, 1480, 2743, 3595, 3809
PspN4I	GGNNCC	7 cut(s)	435, 1617, 2161, 3051, 4501, 5184, 5440
PspPI	GGNCC	7 cut(s)	2159, 2461, 2771, 3388, 3599, 3839, 3891
PspPPI	RGGWCCY	1 cut(s)	2771
PspXI	VCTCGAGB	1 cut(s)	2060
PstI	CTGCAG	2 cut(s)	2225, 4198
PstNI	CAGNNNCTG	5 cut(s)	2963, 3290, 3454, 4453, 4543
PsuI	RGATCY	8 cut(s)	515, 1122, 3049, 4036, 4540, 4796, 5414, 5474
PsyI	GACNNNGTC	1 cut(s)	2775
PvuII	CAGCTG	4 cut(s)	408, 650, 1802, 4864
RseI	CAYNNNNRTG	9 cut(s)	1146, 2134, 2208, 2430, 2610, 3938, 4380, 5162, 5433
SacI	GAGCTC	1 cut(s)	2241
SacII	CCGCGG	1 cut(s)	4023
Sau96I	GGNCC	7 cut(s)	2159, 2461, 2771, 3388, 3599, 3839, 3891
ScaI	AGTACT	3 cut(s)	2227, 3719, 5322
SchI	GAGTC	6 cut(s)	75, 200, 1298, 2072, 2257, 2506
ScrFI	CCNGG	7 cut(s)	527, 573, 1482, 2745, 3597, 3652, 3811
SduI	GDGCHC	9 cut(s)	247, 1332, 1456, 2087, 2241, 2367, 2869, 3595, 4716
SfcI	CTRYAG	8 cut(s)	6, 657, 843, 2221, 4177, 4194, 4398, 4615
Sfr274I	CTCGAG	1 cut(s)	2060
Sfr303I	CCGCGG	1 cut(s)	4023
SfuI	TTCGAA	3 cut(s)	2557, 3780, 4747
SgrBI	CCGCGG	1 cut(s)	4023
SinI	GGWCC	4 cut(s)	2159, 2461, 2771, 3388
SlaI	CTCGAG	1 cut(s)	2060
SmiMI	CAYNNNNRTG	9 cut(s)	1146, 2134, 2208, 2430, 2610, 3938, 4380, 5162, 5433
SpeI	ACTAGT	2 cut(s)	3379, 4267
SphI	GCATGC	1 cut(s)	3577
SspI	AATATT	1 cut(s)	4208
SstI	GAGCTC	1 cut(s)	2241
StyD4I	CCNGG	7 cut(s)	525, 571, 1480, 2743, 3595, 3650, 3809
StyI	CCWWGG	4 cut(s)	2135, 3400, 3704, 4488
TaiI	ACGT	9 cut(s)	561, 2414, 2720, 3178, 4159, 4341, 4438, 4935, 5133
TaqII	GACCGA	1 cut(s)	117
TatI	WGTACW	8 cut(s)	548, 955, 2107, 2176, 2225, 3717, 4233, 5320
TauI	GCSGC	2 cut(s)	80, 351
TseFI	GTSAC	6 cut(s)	251, 1787, 3563, 4116, 4771, 5164
Tsp45I	GTSAC	6 cut(s)	251, 1787, 3563, 4116, 4771, 5164
TspGWI	ACGGA	2 cut(s)	309, 1285
Tth111I	GACNNNGTC	1 cut(s)	2775
Van91I	CCANNNNNTGG	2 cut(s)	202, 4453
Vha464I	CTTAAG	1 cut(s)	2164
VneI	GTGCAC	3 cut(s)	2083, 2865, 3591
VpaK11BI	GGWCC	4 cut(s)	2159, 2461, 2771, 3388
VspI	ATTAAT	3 cut(s)	384, 2904, 4227
XbaI	TCTAGA	3 cut(s)	3259, 4982, 5374
XceI	RCATGY	4 cut(s)	2091, 2379, 3491, 3577
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3407, 4433
XhoI	CTCGAG	1 cut(s)	2060
XmaJI	CCTAGG	1 cut(s)	3704
XmiI	GTMKAC	5 cut(s)	5, 4432, 5017, 5284, 5350
XmnI	GAANNNNTTC	6 cut(s)	878, 1951, 3624, 4389, 4743, 5219
ZrmI	AGTACT	3 cut(s)	2227, 3719, 5322
Zsp2I	ATGCAT	5 cut(s)	1593, 1856, 2332, 3579, 4354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.