Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008435

Physical Location & Seq

Genomic Coordinates Reverse (-)

23396610 .. 23418891

Gene Structure 22282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5517 bp

ATGTCTACACAAGAAACCCACTCTATGGCTACTCTTATCACTTCACTCTCCACCAGCTTCAGCCAAGTCCCTCCGGCGGCTGTTCCTGCCGTCTTGGATTGCATTTTGGCCTCTACCGGCGTATCTCGGTCTTCGCTATTCGCTTCGCTTCTCGACACTTTCACCAAGCTCTCTGAGGGTGTCATGAAAAACGACCAGAAGTTGGACTCCCATGACTGTAACTATCTGGCATCATTGGTTGGGGCACTCTGTCACCTTCTAAAGAAATTTGACACTAATCTTGGTGCTTTGGAATCATTTATATGGAAATGTTTTCTTCCATTGATAAAGATGGCACACATGTTCAGCCGCAATATGCTTAACCAGATTACAGAATCATTTATTAATGCTGTGACTGAGACAAACACCTGGGTAGTTGTGGAGGCAACACTGGTGCCAATTTTTCTAACATTAGTTGCCAGTTCTATTGGTATGCCTGAAAAGGAAGTATCAGATACTTTTCAGTTAATGTTGGGATCTAATGACTGGGTAAATCATATAGAAATGACTACAAAAAACATCCTTTCGCCACCTGGATCACCTTCGCTGCCAATTTCATGCCATATCCTAACCTTAATGCTTGATGCTGTCCTTCAAAGCCAGAAAATAGCTGCCTCCTCTGAATCAATAATTGCAAATGGGTGTTTTGGTGAGAATTTTGCTGGTAAATTGACTTGGGGCCTTTGTAGCTTGACTGAGCAATTGCTTTTACAAAATTTGGAACACCGGTCCTGTGCTACTGCCTTTCTTCTCCCAATCATTTTCAAAGCATTTTCTTCCTATTGCTCTTTTCAAATCTCAATAGATGGGCAGACCTTTACACTTTCAAGGAACAACTTCTTTATGAAAATTTGGAAGTGCTGTGGGACACTGTTTTCTCTTGGAACCGTGGAGAGACGAGATGCTTTTGGCATACTCTCCTTGTACCTGTCTTTTTTTCCTTTTACAGAAGAAAGTGGAGATACCAACATGAGTGATAAAGTGGAATGTTTTGATATAAGAGCTGAAACAAAATTTTGGGACGAGATTAAAAGAGGCCTGGTTGATAAGGAGAGCTTAGTGAGGAAGCAATCGTTACACATCTTAAAGATAGCACTACGCGTAAATGGAGCAGCCCAACCCTCCGGTGTTTTAGAGGATATATCGGCTGAAAATAATTCAATGCCTCACAGCATGACAAAGAGGGAGCTGTGGGCTGATAAGGAAGCTAAATCTCTGGGTGTGGGGAAAATATGTAGCCAAGTTGAGTCTTCTCCGGACAGCCAGAACAAGTGGGAGGCATTTGTATTGCTGTATGAAATGCTTGAAGAGTATGGAACTCACCTCGTTGAAGCAGCTTGGAATTACCAGGTATCCTTGTTACTTCGAAACTCTAGCTCAGATGCTAATAATAAAACCTCTATCAGTGGAGCAGTTCATCAAAACCAGATCGAAAGTCCAGGAGAAATCTTTAACTGGTTAGCAATTTTGTGGGAACGGGGTTTTAATCATGACAATCCTCAAGTTAGGTGCTTGATCATGCAGTCATTTTTAGGGATTGATTGGAAGAATTACGGTACACATGCAAGAACGGTGCCTGGATATTTTGTTCTTGGTTCATTTATACAAGGGCTAAATGACCCTGTGCATCACAAAGAATTTGGTGTAAAAGGAATATACTCTTCAATGACAATAGAAGGTGCAGCTAACTTTCTAAGCGAATATACAAGTTATCTGAATGTGAGGAAGTGCATTATGTTTTTGAGTGACTTAGCATCTGCTGCTAAGCGGCAACCTCTTGGTAGAGTTGGATTGATGTGCCTTGCTGAATGCATTTCTTCTGCTGCTTGTCTAGTCAGAAAGAATAATAGTGAAATTGGTGCACAGTTCTTTGAAGATGGAGTTCATGACGTGATCAAAGTGGGAAAGTCTCCTCACAATGACAAAATTGTTTTGCTTGATGCCTTGAGATTTATTATTGAGAGCAGCAAACAACATTTCAATTCTAATTATCGTCTTCGAGTTTGTGAGAAAGTCCTTGACTCTGCTGCTTCAGTGGTGTGTACATGTGATCTACCTCTTGATGTACTTTTGCACTTCATTTCAACATTTCCATGGGAGTTCACTGATCACGACGGTCCCTTAAGAGAGAAAATACGACAATGGCTTATGGGGTGTGGTAAGCGTTGTAGTGTCAACTGCTGCAGTACTGAGATGAAGCTCCTGAAGAGTCTTTATGACTTTCCAAATAGGTTTACGAGCCATTGCAATGATGATGCTTCAACCACTTTTGACGATGAAGATTTGGATGCATGGGAATTTGAAGCGAAGCGGTGGGCAAGAGTGCTCTTTATTGCATGCATGGAGGAATATCAATTGTTACCCATACTGATGTTTATTCAAAATCACGGTAGTGATGTCTGCAAACAAAACAATAAGATGGACCTATTTCCTGTGAAGTTTTTCATCCTCATCTTGAGTCTAGTTCTGGAGCTTCAGATGATGCAAGAAAGAGTTGCCAAACATGGTTCTAAGCTTAGAACCAAATCAGAGTTTTTTGTGCCAGAATCAATGAATGAATTTAGTCATGCAGATGTTCCTAATTTATACCAAAAGTTCACTGACATTTTTCTTCTCATATTGGAGGAGTTGGTCTCTTTTGCAAACTTGTCTTGTTCCATATTCTCAAATAACAATACCACTACGATGAGAGATGCAACCCTTCCTGGTTCTGTAACCGGAAAACTTGGAGGACCTAGTCAACGCCGGTTGTCATCTTCTACCACTACTGCTGTATTGCAAGCAATTATGTCCATGAAAGCTGTTGCAACTATCTCCTCATTCTGTGCACGAGTTAAAACTGATGTTTCACTTGATCTTCCTATTAATTTTTTGTGGGATTTCTTCTGGAAGACTATTTCGTCTCCAGCTTGTGATTCAGAGACTGGAGCAGAAATACGTCTTGCAGCATATGAAGCATTAGCTCCTACTCTCACAGCACTAGTGTCTGTGTGTTCTCCTCAAACTTTGGATATACTTAAGAAAAATGACAGCTCATTACTATCAGATGGCAAACCTCTGTTGGATTCTTTGGTGCTTTCTTTTCTTCAGAACATAAATAAGCTCCTTACAGTTGGAGTATTTGTACGATCTCGACGTGCAATTTTAATGAATTGGAAGTGGATTTGCCTAGAATCTCTACTGTCAATTCCTTGCTATGCTCTTAGGAATGGGCTTCTTCTAGAGGCAAATAATTTTGTCTTCTCAGGTGCTGCTCTCCGATGTATTTTTTCTGATATTCTTGAGAGCCTTGAGAATGCTGGGGAAGGTTCTGTTTTACCGATGCTCAGATCTGTCCGATTAGTTTTGGACTTATTTGCCCAAGGAAAGTCTGGTTCACTTGTCTGCTTATGTGATGGGGTGGATTCCCAGATGCTGTGGCATTTGGTTCATTCTTCTTGGATATTGCATGTCAGTTGCAACAAGCGGAAGGTTGCACCTATTGCTGCACTTTTGTCTTCCGTTCTCCATTCATCTCTATTTAGTGATGAGAGCATGCACATAATTGATGGTGCACCTGGGCCTCTGAAGTGGTTTGTTGAGAAAATTCTAGAGGAAGGCACGAAAAGTCCCCGTACAATTCGTCTTGCTGCATTACACTTAACAGGGCTGTGGCTATCATATCCTAGGATTATAAAGTACTATGTGAAGGAGCTGAAGCTGCTATCTCTACATGGTTCCGTTGCATTTGATGAGGACTTCGAAGGTGAATTAGCTGATAATCGTGATACCAGGGCTGAAGTTTCTTTGTTGGCAAAAGGCCCTGATCCTGAGCTGACCAAAGCATTTATTAATACAGAGTTGTATGCACGAGCCTCTGTTGCTGTTTTGTTTTACAAGCTAGCAGACATGGCTGTCATGGTGGGATCGACTAATGAAAATGCAGATTGCCATGCAGCTTTGGAATCTGGAAAAATGTTTTTGCTTGAGCTTCTTGATTCCGCGGTAAACGACAAGGATCTTGCAAAAGAGTTGTATAAGAAGTATAGTGCAATTCATAGAAGAAAGGTACGGGCATGGCAAATGATATGTATTTTGTCGCATTTCGTCTGTCAAGATATAGTTTCTGAAGTCGCACGTTGCTTGCACACATCCCTCTATAGGAACAACTTACCTGCAGTTCGTCAATATTTGGAAACATTTGCAATTAATATATACTTAAAGTTTCCATCACTGGTTGGGGAGCAACTAGTTCCTATATTAAGAGATTATGACATGAGGCCTCAGGCTCTCTCTTCTTACGTATTTATAGCAGCTAACGTCATCCTCCATGCATCTCAATCTGTTCAACACCGACATCTGAATGAATTACTTCCTCCTATAGTTCCACTATTAACCTCACATCACCACAGTCTACGTGGTTTCACCCAGTTGCTGGTTTACCAAGTTCTTTGCAAATTGTTCCCTCCATTGGATTCTAAAGCCGCTGAAACTATGACTTTAGAGAAGAGGTGTTTTGAGGATCTCAAATCCTACCTCGCAAAGAATTCTGATTGTACGCGCTTACGACAATCAATGGAAGGATATCTTGATGCCTACAGTCCCCATAGCTCGGTCACTCCTGCGGGCGTTTTCATCAACCGGGTTGAGGACGTCGAGTTTGAATGTGTACCAAAATCCCTTATGGATCAAGTGCTCAACTTTTTGAATGATGTGAGGGAAGACCTTCGAAATTCAATGGCAAAGGATGTTGTGACTATTAAGAATGAGAGTTTGAGATCTGATGGAGATCAAGACCACATGGCGATACTGTCTAATGCTAATGAAAGAAAATTGAGTACCCGGCTGCCTAAAGATACCTCACTAGATTTTCAGAAGAAGATTACTCTGTCTAAACACGAGAAGCAAGACATAAACGTTAATTCTCACCAAGAAACTTACAAACAACTTCAGGAAATAGAAAAGGACGATAAGCTTCTTGCTCAGGTGCTGCAGTCTAGAACTCTAGGAATGGAAAGAGAGAGATCAAGCAGACAACATCTTATCCTTGTAGCATCTCTGCTTGATCGGATACCTAACCTAGCTGGCCTTGCACGGACTTGTGAGGTATTTAAAGCATCAAGTTTGGCCATTGCAGATACGAACGTGTTACATGACAAACAGTTCCAACTCATCAGTGTGACTGCAGAGAAGTGGGTTCCTATCATCGAAGTCCCAGTGAATAGTTTGAAGGTGTTCCTTCAGAAAAAGAAACGAGAAGGCTTCTCAATTTTAGGACTAGAGCAGACTGCAAATAGTATACCTCTTGATCAATATATATTTCCAAAAGACACAGTACTGGTTCTTGGGCGAGAGAAGGAAGGTATACCAGTTGATATAATACATATTCTGGATGCTTGCCTTGAGATTCCACAGTTGGGAGTTGTTAGATCTCTCAATGTTCATGTCAGTGGTGCCATTGCTCTTTGGGAGTATACTAGACAGCAGAGATCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008649 GO:0008757 GO:0009451 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016072 GO:0016423 GO:0016435 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030488 GO:0031167 GO:0031323 GO:0031326 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070039 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:0140102 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

1838

Amino Acids

206.05

Weight (kDa)

6.16

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	1687 - 1829	4.9e-25	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17610 AT4G17610 AT4G17610
fragaria_vesca	FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370
malus_domestica	MD04G1055600.v1.1
prunus_persica	Prupe.5G055400_v2.0.a1 Prupe.5G055400_v2.0.a1
pyrus_communis	pycom04g04890
rosa_chinensis	RchiOBHm_Chr7g0205631
rosa_laevigata	RLG00000003369
rosa_multiflora	Rmu_ssc0000482.1_g000025
rosa_roxburghii	Rroxscaffold_3G00252130
rosa_rugosa	Rorug07G0092300
rosa_samantha	Rh7AG223100 Rh7AG230100 Rh7BG218100 Rh7CG236300 Rh7DG230000
rosa_wichuraiana	Rw7G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3713
AasI	GACNNNNNNGTC	2 cut(s)	2938, 3932
AatII	GACGTC	1 cut(s)	4674
Acc36I	ACCTGC	1 cut(s)	4201
AccB1I	GGYRCC	3 cut(s)	433, 1612, 5471
AccB7I	CCANNNNNTGG	3 cut(s)	25, 202, 4453
AccI	GTMKAC	5 cut(s)	5, 4432, 5317, 5383, 5492
AccII	CGCG	3 cut(s)	1140, 4022, 4579
AccIII	TCCGGA	1 cut(s)	1294
AciI	CCGC	9 cut(s)	77, 349, 1807, 2350, 3505, 4020, 4022, 4503, 4643
AclI	AACGTT	1 cut(s)	4935
AclWI	GGATC	8 cut(s)	523, 583, 3839, 3952, 4044, 4548, 4713, 5502
AcoI	YGGCCR	1 cut(s)	5145
AcyI	GRCGYC	1 cut(s)	4671
AfiI	CCNNNNNNNGG	9 cut(s)	25, 76, 202, 4179, 4453, 4489, 4630, 4666, 5435
AflII	CTTAAG	2 cut(s)	2161, 3056
AflIII	ACRYGT	4 cut(s)	339, 1138, 2084, 5163
AgeI	ACCGGT	1 cut(s)	765
AhlI	ACTAGT	2 cut(s)	3019, 4267
AjiI	CACGTC	2 cut(s)	1930, 3176
AjnI	CCWGG	9 cut(s)	407, 571, 1077, 1386, 1477, 1615, 2743, 3595, 3809
AleI	CACNNNNGTG	1 cut(s)	2430
AloI	GAACNNNNNNTCC	2 cut(s)	1611, 1643
Alw21I	GWGCWC	5 cut(s)	1903, 2367, 2869, 3595, 4716
Alw26I	GTCTC	6 cut(s)	392, 928, 1953, 2677, 2946, 2954
Alw44I	GTGCAC	3 cut(s)	1899, 2865, 3591
AlwI	GGATC	8 cut(s)	523, 583, 3839, 3952, 4044, 4548, 4713, 5502
AlwNI	CAGNNNCTG	5 cut(s)	2963, 3290, 3454, 4453, 5008
Aor13HI	TCCGGA	1 cut(s)	1294
AoxI	GGCC	8 cut(s)	108, 718, 1075, 3599, 3838, 4298, 5104, 5145
ApaLI	GTGCAC	3 cut(s)	1899, 2865, 3591
ArsI	GACNNNNNNTTYG	2 cut(s)	4661, 4693
AseI	ATTAAT	4 cut(s)	384, 2904, 3870, 4227
AsiGI	ACCGGT	1 cut(s)	765
Asp700I	GAANNNNTTC	5 cut(s)	875, 2480, 4389, 4743, 5252
AspA2I	CCTAGG	1 cut(s)	3704
AspLEI	GCGC	1 cut(s)	4581
AspS9I	GGNCC	7 cut(s)	718, 768, 2156, 2461, 2771, 3599, 3839
AsuC2I	CCSGG	2 cut(s)	4661, 4861
AsuHPI	GGTGA	9 cut(s)	154, 245, 570, 701, 1352, 3797, 4415, 4435, 4937
AsuII	TTCGAA	3 cut(s)	1405, 3780, 4747
AsuNHI	GCTAGC	1 cut(s)	3919
AvaII	GGWCC	4 cut(s)	768, 2156, 2461, 2771
AvrII	CCTAGG	1 cut(s)	3704
AxyI	CCTNAGG	1 cut(s)	4302
BaeGI	GKGCMC	4 cut(s)	247, 1903, 2869, 3595
BaeI	ACNNNNGTAYC	4 cut(s)	105, 138, 5148, 5181
BalI	TGGCCA	1 cut(s)	5147
BanI	GGYRCC	3 cut(s)	433, 1612, 5471
BauI	CACGAG	3 cut(s)	2868, 3888, 4916
BbsI	GAAGAC	7 cut(s)	123, 1281, 2027, 2936, 3271, 3528, 4746
Bbv12I	GWGCWC	5 cut(s)	1903, 2367, 2869, 3595, 4716
BccI	CCATC	9 cut(s)	325, 839, 1910, 2452, 3080, 3428, 3581, 4255, 4796
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	9 cut(s)	409, 573, 1079, 1388, 1479, 1617, 2745, 3597, 3811
BciVI	GTATCC	2 cut(s)	1402, 5082
BclI	TGATCA	4 cut(s)	1554, 1932, 2146, 5326
BcnI	CCSGG	2 cut(s)	4661, 4861
BcoDI	GTCTC	6 cut(s)	392, 928, 1953, 2677, 2946, 2954
BcuI	ACTAGT	2 cut(s)	3019, 4267
BfmI	CTRYAG	7 cut(s)	2221, 4177, 4194, 4398, 4615, 5009, 5202
BfrI	CTTAAG	2 cut(s)	2161, 3056
BfuAI	ACCTGC	1 cut(s)	4201
BfuI	GTATCC	2 cut(s)	1402, 5082
BglII	AGATCT	3 cut(s)	3368, 4796, 5447
BlnI	CCTAGG	1 cut(s)	3704
BlpI	GCTNAGC	1 cut(s)	1803
BmcAI	AGTACT	3 cut(s)	2227, 3719, 5355
Bme18I	GGWCC	4 cut(s)	768, 2156, 2461, 2771
BmgBI	CACGTC	2 cut(s)	1930, 3176
BmgT120I	GGNCC	7 cut(s)	718, 768, 2156, 2461, 2771, 3599, 3839
BmiI	GGNNCC	8 cut(s)	435, 719, 925, 1614, 2158, 3757, 5217, 5473
BmrI	ACTGGG	4 cut(s)	535, 4441, 5228, 5506
BmtI	GCTAGC	1 cut(s)	3923
BmuI	ACTGGG	4 cut(s)	535, 4441, 5228, 5506
BpiI	GAAGAC	7 cut(s)	123, 1281, 2027, 2936, 3271, 3528, 4746
BplI	GAGNNNNNCTC	2 cut(s)	2657, 2689
BpmI	CTGGAG	3 cut(s)	2528, 2928, 2985
Bpu10I	CCTNAGC	2 cut(s)	3849, 5001
Bpu1102I	GCTNAGC	1 cut(s)	1803
Bpu14I	TTCGAA	3 cut(s)	1405, 3780, 4747
BpuEI	CTTGAG	7 cut(s)	1524, 2005, 2515, 3341, 3350, 4025, 5441
BpuMI	CCSGG	2 cut(s)	4661, 4861
BsaAI	YACGTR	2 cut(s)	4321, 4436
BsaBI	GATNNNNATC	1 cut(s)	4806
BsaHI	GRCGYC	1 cut(s)	4671
BsaI	GGTCTC	1 cut(s)	2677
BsaJI	CCNNGG	8 cut(s)	408, 927, 2132, 3400, 3596, 3704, 3810, 4020
BsaWI	WCCGGW	4 cut(s)	765, 1163, 1294, 2756
BsaXI	ACNNNNNCTCC	2 cut(s)	3147, 3177
Bsc4I	CCNNNNNNNGG	9 cut(s)	25, 76, 202, 4179, 4453, 4489, 4630, 4666, 5435
Bse118I	RCCGGY	3 cut(s)	116, 765, 2784
Bse21I	CCTNAGG	1 cut(s)	4302
Bse3DI	GCAATG	4 cut(s)	2281, 2293, 5148, 5475
Bse8I	GATNNNNATC	1 cut(s)	4806
BseAI	TCCGGA	1 cut(s)	1294
BseBI	CCWGG	9 cut(s)	409, 573, 1079, 1388, 1479, 1617, 2745, 3597, 3811
BseDI	CCNNGG	8 cut(s)	408, 927, 2132, 3400, 3596, 3704, 3810, 4020
BseGI	GGATG	7 cut(s)	558, 2332, 2484, 4169, 4341, 4771, 5416
BseJI	GATNNNNATC	1 cut(s)	4806
BseLI	CCNNNNNNNGG	9 cut(s)	25, 76, 202, 4179, 4453, 4489, 4630, 4666, 5435
BseMI	GCAATG	4 cut(s)	2281, 2293, 5148, 5475
BseRI	GAGGAG	5 cut(s)	646, 1941, 2678, 2845, 3027
BseSI	GKGCMC	4 cut(s)	247, 1903, 2869, 3595
BseYI	CCCAGC	1 cut(s)	3338
BsgI	GTGCAG	2 cut(s)	1740, 3510
Bsh1236I	CGCG	3 cut(s)	1140, 4022, 4579
BshFI	GGCC	8 cut(s)	110, 720, 1077, 3601, 3840, 4300, 5106, 5147
BshNI	GGYRCC	3 cut(s)	433, 1612, 5471
BshTI	ACCGGT	1 cut(s)	765
BsiHKAI	GWGCWC	5 cut(s)	1903, 2367, 2869, 3595, 4716
BsiSI	CCGG	9 cut(s)	74, 117, 766, 1164, 1295, 2757, 2785, 4660, 4861
BslFI	GGGAC	7 cut(s)	53, 919, 1073, 2142, 3633, 4605, 5216
BslI	CCNNNNNNNGG	9 cut(s)	25, 76, 202, 4179, 4453, 4489, 4630, 4666, 5435
BsmAI	GTCTC	6 cut(s)	392, 928, 1953, 2677, 2946, 2954
BsmBI	CGTCTC	2 cut(s)	928, 2946
BsmFI	GGGAC	7 cut(s)	53, 919, 1073, 2142, 3633, 4605, 5216
BsmI	GAATGC	2 cut(s)	1853, 3340
BsnI	GGCC	8 cut(s)	110, 720, 1077, 3601, 3840, 4300, 5106, 5147
Bso31I	GGTCTC	1 cut(s)	2677
Bsp119I	TTCGAA	3 cut(s)	1405, 3780, 4747
Bsp1286I	GDGCHC	6 cut(s)	247, 1903, 2367, 2869, 3595, 4716
Bsp13I	TCCGGA	1 cut(s)	1294
Bsp1407I	TGTACA	1 cut(s)	2081
Bsp1720I	GCTNAGC	1 cut(s)	1803
Bsp19I	CCATGG	1 cut(s)	2132
BspACI	CCGC	9 cut(s)	77, 349, 1807, 2350, 3505, 4020, 4022, 4503, 4643
BspANI	GGCC	8 cut(s)	110, 720, 1077, 3601, 3840, 4300, 5106, 5147
BspEI	TCCGGA	1 cut(s)	1294
BspFNI	CGCG	3 cut(s)	1140, 4022, 4579
BspHI	TCATGA	3 cut(s)	183, 1528, 1924
BspLI	GGNNCC	8 cut(s)	435, 719, 925, 1614, 2158, 3757, 5217, 5473
BspMAI	CTGCAG	4 cut(s)	2225, 4198, 5013, 5206
BspMI	ACCTGC	1 cut(s)	4201
BspOI	GCTAGC	1 cut(s)	3923
BspPI	GGATC	8 cut(s)	523, 583, 3839, 3952, 4044, 4548, 4713, 5502
BspT104I	TTCGAA	3 cut(s)	1405, 3780, 4747
BspT107I	GGYRCC	3 cut(s)	433, 1612, 5471
BspTI	CTTAAG	2 cut(s)	2161, 3056
BspTNI	GGTCTC	1 cut(s)	2677
BsrDI	GCAATG	4 cut(s)	2281, 2293, 5148, 5475
BsrFI	RCCGGY	3 cut(s)	116, 765, 2784
BsrGI	TGTACA	1 cut(s)	2081
BssAI	RCCGGY	3 cut(s)	116, 765, 2784
BssECI	CCNNGG	8 cut(s)	408, 927, 2132, 3400, 3596, 3704, 3810, 4020
BssNAI	GTATAC	3 cut(s)	5318, 5384, 5493
BssNI	GRCGYC	1 cut(s)	4671
BssSI	CACGAG	3 cut(s)	2868, 3888, 4916
BssT1I	CCWWGG	3 cut(s)	2132, 3400, 3704
Bst1107I	GTATAC	3 cut(s)	5318, 5384, 5493
Bst2BI	CACGAG	3 cut(s)	2868, 3888, 4916
Bst2UI	CCWGG	9 cut(s)	409, 573, 1079, 1388, 1479, 1617, 2745, 3597, 3811
Bst6I	CTCTTC	5 cut(s)	1341, 1705, 2240, 4318, 4520
BstACI	GRCGYC	1 cut(s)	4671
BstAFI	CTTAAG	2 cut(s)	2161, 3056
BstAPI	GCANNNNNTGC	2 cut(s)	1799, 3521
BstAUI	TGTACA	1 cut(s)	2081
BstBAI	YACGTR	2 cut(s)	4321, 4436
BstBI	TTCGAA	3 cut(s)	1405, 3780, 4747
BstC8I	GCNNGC	8 cut(s)	2377, 2820, 3575, 3921, 4163, 4645, 5104, 5416
BstDSI	CCRYGG	3 cut(s)	927, 2132, 4020
BstF5I	GGATG	7 cut(s)	558, 2332, 2484, 4169, 4341, 4771, 5416
BstFNI	CGCG	3 cut(s)	1140, 4022, 4579
BstHHI	GCGC	1 cut(s)	4581
BstMAI	GTCTC	6 cut(s)	392, 928, 1953, 2677, 2946, 2954
BstMWI	GCNNNNNNNGC	9 cut(s)	86, 726, 1799, 2993, 3521, 3739, 3899, 3929, 5108
BstNI	CCWGG	9 cut(s)	409, 573, 1079, 1388, 1479, 1617, 2745, 3597, 3811
BstNSI	RCATGY	6 cut(s)	343, 1604, 2088, 2379, 3491, 3577
BstSFI	CTRYAG	7 cut(s)	2221, 4177, 4194, 4398, 4615, 5009, 5202
BstSLI	GKGCMC	4 cut(s)	247, 1903, 2869, 3595
BstSNI	TACGTA	1 cut(s)	4321
BstUI	CGCG	3 cut(s)	1140, 4022, 4579
BstV2I	GAAGAC	7 cut(s)	123, 1281, 2027, 2936, 3271, 3528, 4746
BstX2I	RGATCY	7 cut(s)	515, 3368, 4036, 4540, 4796, 5447, 5507
BstYI	RGATCY	7 cut(s)	515, 3368, 4036, 4540, 4796, 5447, 5507
BstZ17I	GTATAC	3 cut(s)	5318, 5384, 5493
Bsu36I	CCTNAGG	1 cut(s)	4302
BsuI	GTATCC	2 cut(s)	1402, 5082
BsuRI	GGCC	8 cut(s)	110, 720, 1077, 3601, 3840, 4300, 5106, 5147
BtgI	CCRYGG	3 cut(s)	927, 2132, 4020
BtrI	CACGTC	2 cut(s)	1930, 3176
BtsCI	GGATG	7 cut(s)	558, 2332, 2484, 4169, 4341, 4771, 5416
BveI	ACCTGC	1 cut(s)	4201
Cac8I	GCNNGC	8 cut(s)	2377, 2820, 3575, 3921, 4163, 4645, 5104, 5416
CaiI	CAGNNNCTG	5 cut(s)	2963, 3290, 3454, 4453, 5008
CciI	TCATGA	3 cut(s)	183, 1528, 1924
CfoI	GCGC	1 cut(s)	4581
Cfr10I	RCCGGY	3 cut(s)	116, 765, 2784
Cfr13I	GGNCC	7 cut(s)	718, 768, 2156, 2461, 2771, 3599, 3839
Cfr42I	CCGCGG	1 cut(s)	4023
CsiI	ACCWGGT	1 cut(s)	1386
CspAI	ACCGGT	1 cut(s)	765
DraI	TTTAAA	1 cut(s)	5131
DrdI	GACNNNNNNGTC	2 cut(s)	2938, 3932
DseDI	GACNNNNNNGTC	2 cut(s)	2938, 3932
EaeI	YGGCCR	1 cut(s)	5145
Eam1104I	CTCTTC	5 cut(s)	1341, 1705, 2240, 4318, 4520
EarI	CTCTTC	5 cut(s)	1341, 1705, 2240, 4318, 4520
Eco105I	TACGTA	1 cut(s)	4321
Eco130I	CCWWGG	3 cut(s)	2132, 3400, 3704
Eco147I	AGGCCT	2 cut(s)	1077, 4300
Eco31I	GGTCTC	1 cut(s)	2677
Eco32I	GATATC	1 cut(s)	4604
Eco47I	GGWCC	4 cut(s)	768, 2156, 2461, 2771
Eco81I	CCTNAGG	1 cut(s)	4302
EcoO109I	RGGNCCY	3 cut(s)	718, 2771, 3839
EcoRI	GAATTC	1 cut(s)	4564
EcoRII	CCWGG	9 cut(s)	407, 571, 1077, 1386, 1477, 1615, 2743, 3595, 3809
EcoRV	GATATC	1 cut(s)	4604
EcoT14I	CCWWGG	3 cut(s)	2132, 3400, 3704
EcoT22I	ATGCAT	4 cut(s)	1853, 2332, 2381, 4354
ErhI	CCWWGG	3 cut(s)	2132, 3400, 3704
Esp3I	CGTCTC	2 cut(s)	928, 2946
FalI	AAGNNNNNCTT	4 cut(s)	1079, 1111, 4590, 4622
FaqI	GGGAC	7 cut(s)	53, 919, 1073, 2142, 3633, 4605, 5216
FauI	CCCGC	1 cut(s)	4636
FauNDI	CATATG	1 cut(s)	2989
FbaI	TGATCA	4 cut(s)	1554, 1932, 2146, 5326
FblI	GTMKAC	5 cut(s)	5, 4432, 5317, 5383, 5492
FokI	GGATG	7 cut(s)	545, 2339, 2471, 4156, 4328, 4778, 5423
GlaI	GCGC	1 cut(s)	4580
GsaI	CCCAGC	1 cut(s)	3342
GsuI	CTGGAG	3 cut(s)	2528, 2928, 2985
HaeIII	GGCC	8 cut(s)	110, 720, 1077, 3601, 3840, 4300, 5106, 5147
HapII	CCGG	9 cut(s)	74, 117, 766, 1164, 1295, 2757, 2785, 4660, 4861
HhaI	GCGC	1 cut(s)	4581
Hin1I	GRCGYC	1 cut(s)	4671
Hin6I	GCGC	1 cut(s)	4579
HinP1I	GCGC	1 cut(s)	4579
HincII	GTYRAC	2 cut(s)	2215, 2780
HindII	GTYRAC	2 cut(s)	2215, 2780
HindIII	AAGCTT	2 cut(s)	2552, 4991
HpaII	CCGG	9 cut(s)	74, 117, 766, 1164, 1295, 2757, 2785, 4660, 4861
HphI	GGTGA	9 cut(s)	154, 245, 570, 701, 1352, 3797, 4415, 4435, 4937
Hpy99I	CGWCG	3 cut(s)	2156, 3177, 4676
HpyF10VI	GCNNNNNNNGC	9 cut(s)	86, 726, 1799, 2993, 3521, 3739, 3899, 3929, 5108
Hsp92I	GRCGYC	1 cut(s)	4671
HspAI	GCGC	1 cut(s)	4579
Kpn2I	TCCGGA	1 cut(s)	1294
Ksp22I	TGATCA	4 cut(s)	1554, 1932, 2146, 5326
KspI	CCGCGG	1 cut(s)	4023
MabI	ACCWGGT	1 cut(s)	1386
MfeI	CAATTG	2 cut(s)	740, 2393
MflI	RGATCY	7 cut(s)	515, 3368, 4036, 4540, 4796, 5447, 5507
MhlI	GDGCHC	6 cut(s)	247, 1903, 2367, 2869, 3595, 4716
MlsI	TGGCCA	1 cut(s)	5147
MluI	ACGCGT	1 cut(s)	1138
MluNI	TGGCCA	1 cut(s)	5147
MlyI	GAGTC	5 cut(s)	200, 1295, 2054, 2257, 2506
MmeI	TCCRAC	5 cut(s)	183, 1807, 3081, 3133, 5209
Mox20I	TGGCCA	1 cut(s)	5147
Mph1103I	ATGCAT	4 cut(s)	1853, 2332, 2381, 4354
MroI	TCCGGA	1 cut(s)	1294
MroXI	GAANNNNTTC	5 cut(s)	875, 2480, 4389, 4743, 5252
MscI	TGGCCA	1 cut(s)	5147
Msp20I	TGGCCA	1 cut(s)	5147
MspA1I	CMGCKG	2 cut(s)	4022, 4505
MspCI	CTTAAG	2 cut(s)	2161, 3056
MspI	CCGG	9 cut(s)	74, 117, 766, 1164, 1295, 2757, 2785, 4660, 4861
MunI	CAATTG	2 cut(s)	740, 2393
Mva1269I	GAATGC	2 cut(s)	1853, 3340
MvaI	CCWGG	9 cut(s)	409, 573, 1079, 1388, 1479, 1617, 2745, 3597, 3811
MvnI	CGCG	3 cut(s)	1140, 4022, 4579
MwoI	GCNNNNNNNGC	9 cut(s)	86, 726, 1799, 2993, 3521, 3739, 3899, 3929, 5108
NciI	CCSGG	2 cut(s)	4661, 4861
NcoI	CCATGG	1 cut(s)	2132
NdeI	CATATG	1 cut(s)	2989
NheI	GCTAGC	1 cut(s)	3919
NlaIV	GGNNCC	8 cut(s)	435, 719, 925, 1614, 2158, 3757, 5217, 5473
NmuCI	GTSAC	6 cut(s)	251, 391, 1784, 4633, 4771, 5197
NsiI	ATGCAT	4 cut(s)	1853, 2332, 2381, 4354
NspI	RCATGY	6 cut(s)	343, 1604, 2088, 2379, 3491, 3577
NspV	TTCGAA	3 cut(s)	1405, 3780, 4747
OliI	CACNNNNGTG	1 cut(s)	2430
PaeI	GCATGC	2 cut(s)	2379, 3577
PagI	TCATGA	3 cut(s)	183, 1528, 1924
PceI	AGGCCT	2 cut(s)	1077, 4300
PciI	ACATGT	2 cut(s)	339, 2084
PcsI	WCGNNNNNNNCGW	1 cut(s)	3172
PctI	GAATGC	2 cut(s)	1853, 3340
PdmI	GAANNNNTTC	5 cut(s)	875, 2480, 4389, 4743, 5252
PflFI	GACNNNGTC	1 cut(s)	2775
PflMI	CCANNNNNTGG	3 cut(s)	25, 202, 4453
PfoI	TCCNGGA	1 cut(s)	1477
PinAI	ACCGGT	1 cut(s)	765
PleI	GAGTC	5 cut(s)	200, 1294, 2054, 2256, 2505
PpsI	GAGTC	5 cut(s)	200, 1294, 2054, 2256, 2505
Ppu21I	YACGTR	2 cut(s)	4321, 4436
PpuMI	RGGWCCY	1 cut(s)	2771
PscI	ACATGT	2 cut(s)	339, 2084
PshBI	ATTAAT	4 cut(s)	384, 2904, 3870, 4227
PsiI	TTATAA	1 cut(s)	3713
Psp1406I	AACGTT	1 cut(s)	4935
Psp5II	RGGWCCY	1 cut(s)	2771
Psp6I	CCWGG	9 cut(s)	407, 571, 1077, 1386, 1477, 1615, 2743, 3595, 3809
PspFI	CCCAGC	1 cut(s)	3338
PspGI	CCWGG	9 cut(s)	407, 571, 1077, 1386, 1477, 1615, 2743, 3595, 3809
PspN4I	GGNNCC	8 cut(s)	435, 719, 925, 1614, 2158, 3757, 5217, 5473
PspPI	GGNCC	7 cut(s)	718, 768, 2156, 2461, 2771, 3599, 3839
PspPPI	RGGWCCY	1 cut(s)	2771
PstI	CTGCAG	4 cut(s)	2225, 4198, 5013, 5206
PstNI	CAGNNNCTG	5 cut(s)	2963, 3290, 3454, 4453, 5008
PsuI	RGATCY	7 cut(s)	515, 3368, 4036, 4540, 4796, 5447, 5507
PsyI	GACNNNGTC	1 cut(s)	2775
SacII	CCGCGG	1 cut(s)	4023
Sau96I	GGNCC	7 cut(s)	718, 768, 2156, 2461, 2771, 3599, 3839
ScaI	AGTACT	3 cut(s)	2227, 3719, 5355
SchI	GAGTC	5 cut(s)	200, 1295, 2054, 2257, 2506
SduI	GDGCHC	6 cut(s)	247, 1903, 2367, 2869, 3595, 4716
SexAI	ACCWGGT	1 cut(s)	1386
SfcI	CTRYAG	7 cut(s)	2221, 4177, 4194, 4398, 4615, 5009, 5202
Sfr303I	CCGCGG	1 cut(s)	4023
SfuI	TTCGAA	3 cut(s)	1405, 3780, 4747
SgrBI	CCGCGG	1 cut(s)	4023
SinI	GGWCC	4 cut(s)	768, 2156, 2461, 2771
SmlI	CTYRAG	9 cut(s)	1539, 1984, 2161, 2494, 3056, 3320, 3329, 4004, 5420
SmoI	CTYRAG	9 cut(s)	1539, 1984, 2161, 2494, 3056, 3320, 3329, 4004, 5420
SnaBI	TACGTA	1 cut(s)	4321
SpeI	ACTAGT	2 cut(s)	3019, 4267
SphI	GCATGC	2 cut(s)	2379, 3577
SseBI	AGGCCT	2 cut(s)	1077, 4300
SsiI	CCGC	9 cut(s)	77, 349, 1807, 2350, 3505, 4020, 4022, 4503, 4643
SspI	AATATT	1 cut(s)	4208
StuI	AGGCCT	2 cut(s)	1077, 4300
StyI	CCWWGG	3 cut(s)	2132, 3400, 3704
TaqII	GACCGA	2 cut(s)	117, 4621
TatI	WGTACW	5 cut(s)	2081, 2104, 2225, 3717, 5353
TauI	GCSGC	4 cut(s)	80, 351, 1810, 4505
TseFI	GTSAC	6 cut(s)	251, 391, 1784, 4633, 4771, 5197
Tsp45I	GTSAC	6 cut(s)	251, 391, 1784, 4633, 4771, 5197
TspGWI	ACGGA	3 cut(s)	3529, 3748, 5128
Tth111I	GACNNNGTC	1 cut(s)	2775
Van91I	CCANNNNNTGG	3 cut(s)	25, 202, 4453
Vha464I	CTTAAG	2 cut(s)	2161, 3056
VneI	GTGCAC	3 cut(s)	1899, 2865, 3591
VpaK11BI	GGWCC	4 cut(s)	768, 2156, 2461, 2771
VspI	ATTAAT	4 cut(s)	384, 2904, 3870, 4227
XbaI	TCTAGA	3 cut(s)	3259, 3628, 5015
XceI	RCATGY	6 cut(s)	343, 1604, 2088, 2379, 3491, 3577
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3407, 4433
XmaJI	CCTAGG	1 cut(s)	3704
XmiI	GTMKAC	5 cut(s)	5, 4432, 5317, 5383, 5492
XmnI	GAANNNNTTC	5 cut(s)	875, 2480, 4389, 4743, 5252
ZraI	GACGTC	1 cut(s)	4672
ZrmI	AGTACT	3 cut(s)	2227, 3719, 5355
Zsp2I	ATGCAT	4 cut(s)	1853, 2332, 2381, 4354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.