Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008435

Physical Location & Seq

Genomic Coordinates Forward (+)

4504610 .. 4519506

Gene Structure 14897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04890.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3423 bp

ATGCACTTCATTTCAACATTTCCTTGGGAATTTACCGACTTTGGTGGTTGCTTAAGAGTGAAATTACAAGAATGGCTTATGGGGTGTGGTAAGAAGAATTGTTATGGCAACTGCTGCAGTACTGAGACGAAGCTTCTGAAGGGTCTCCATGAATTCCCCAGTAGGTTTACAGTTCATTATTCAGTTGATAGGTCCATCACTTTTGATGATGAAGACTTGGAATCCTGGGAATTTGAAGCAAAGCGGTGGGCACGAGTGCTTTTTCTTACATGCCAGGAGGAATATCATTTGATACCTACACTGATGTTTATTCAAACTCATGCTCTTGGTCTCTGCCAAGAAAACAACAATTTGGATCAAATTCCTGTGAAGTTTCTCATTGTAATTTTGAGCTTGGTGCGGGAGCTTCAGATGATGCAAGACAGAGTCGCTGAATATAGATCTACAGTTAGAACCAAATCAGAATCTCGTGCGCTTGAATTAATGGATCAATTTGGTCAGCCAGATGCTCTTAACTTTTACCAGAAGTTTACCAATGTTTTTATTCTTATAATGAAGGAGTTGGTGTCTTTAGCAAACTTGTCCTGTTCTATTTTCTCACATGCCAATACCACTAAGATGGCAGATGCCAGCTTTCCTGGTTCAGTGAAAGGAAAACTTGGAGGCCCTAGTCAACGCCGTTTGTCATCCTCTACCACCTCCGCTGTGTTGCAAGCGATCATTTCCATGAAGGCTCTTGCAACTATCTCATCATGGTGTGCACAATTTATAGCTGATGCATCACTTGATCTTGCTTTTAATTTTATGTGGGAATTCTACTGGAAAACTGTTTCATCTCCAGTTACTGATTCAGAGACTGGGGCGGAAATAAGTCTTGCAGCATATGAAGCATTAGCTCCTGCTCTCACAGCACTAGTGTCTATGTTTTCTCCTAAATCGTTGGATCTTGTCACGAACAATGGCAATCTGTTTTTATCAGATGGAAAACCTCTGTTAGATTCCTTGGTTCTTTCTTTTCTTCAGAACATAAATAATCTCCTAGCAATTGGAGTATTTGTACGGACTCGACGTGCAGTTTTAATGAATTGGAAGTGGATTTGCCTAGAATCTCTACTGTCAATTCCTTGCTATGCTTTAAAAAAAGGGCTTCATTTAGAGGACAATAATTTTTTGCTCTCAGGTGATACTCTCAGATTGATTTTTACTGATCTTCTTGAGAGCCTAGAGAATGCTGGAGAAAATTCTGTTCTACCAATGCTCAGATCAGTCCGATTAGTTTTGGGCCTATTGTCCGAGGGAAAGTCTGGTTCACTTATCTATTCATGTGATGGGGTGGATGCCCAGATGATGTGGCAGTTGGTTCAGTCTTCTTGGATTTTGCATGTCAGTTGTAACAAGAGGAAGGTTGCACCTATTGCTGCACTTTTGTCTTCTGTTCTGCATTCATCCCTCTTTAGTGATGAGAGCATGCATATGAATGACAATGCACCTGGGCCTCTGAAGTGGTTTGTTGAGAAAATTCTGGAGGAAGGCACAAAAAGTCCCCGCACAATTCGTCTTGCTGCATTACACTTAACGGGCCTCTTTCTATCATATCCTAGGATTATAAAGTACTATGTGAAGGAGTTGAAGCTGCTGTCACTACATGGTTCTGTTGCATTCGATGAGGACTTTGAAGGTGAATTAGCTGATAATCATGATACAAGGACTGAAGTTTCTTTATTGGCGAAAGGCCCTGATCCTGAGCTTACCAAAGAATTTATCAACACAGAATTGTATGCACGTGCCTCTGTTGCTGTTCTGTTTTACAAGCTAGCAGACTTGTCCGATATGGTGGGATCACCAAATGAAAATGAAGATTGCCATGCAGCTTTGGAATCTGGAAAAATATTTTTGCTTGAGCTTCTAGATTCTGCGGTAAACGACAAGGATCTTTCGAAAGAGCTGTATAAGAAATACAGTGCAATCCACAGGCGTAAGGTACGTGCATGGCAAATGATATGTATTTTGTCACGTTTCATATGTCAAGATATAGTTTCTGAAGTTTCACGTTGCCTGCACATATGCCTTTATATGAACAATTTACCTGCAGTTCGTCAATACTTGGAAACATTCGCAATTAATATGTACTTGAAGTTCCCATCATTGGTTGCGGAGCAACTAGTCCCTGTATTAAGAGATTATGAGATGAGGCCTCAGGCACTCTCTTCATATGTATTTATAGCAGCGAATGTCATCCTCCATGCATCTCAAGCTGTTCAAGACAAGCATTTGAATGAATTACTTCCTCCTATATTTCCACTACTAACATCCCATCACCACAGTTTGCGTGGTTTCGCCCAGTTATTGGTTTACCAAGTTCTCTGCAAATTGTTTCCTCCATTGGACTCTAGGGCCTCTGGAACTATGACTTTAGAGAAGAGGTGTTTTGAGGATTTGAAATCCTACCTGGCAAAGAACTCTGATTGTGTGCGCCTACGAGCATCAATGGGAGGATTTCTTGATGCCTACAGTCCCAGTAGCTCTGTCACTCCTGCTGGGATTTTCATCAACCGGGTTGAGGCACTCGAGTTTGAATGTGTACCAGTGTCACTTACGGAGCAAGTGCTCAACTTTTTAAATGATGTCAGGGAAGATCTTCGGAGTTCAATGGCAAAAGATGCTGCGGCTATTAAGAATGAAAGCTTAAGATCTGATGAAGATCAAAATTGCACAGCAATACCATCTAATGCAAATGAAGGAAACTCACATACCCAGCAGCCCAAAGATATTTCACTGGATTTTCAAAAAAAGATTACCCTCTCTAAACATGAGAAGCATGACATAGCCGTAAATTCCTTCTTTGGCAACCAAGACACTTACAAACCACTTGAAGAAATGGAGAAGGAAGATAAGCTTCTTGCTCAGGTGCTGCAGTCTAGAAGTCAGGCAATGGAAAGAGAGAGAGCAAGCAGACAACAACTCATTCTTGTGGCATCTCTTCTTGATCGCATACCTAACCTTGCTGGCCTGGCACGGACTTGTGAGGTGTTTAAGGTGTCGGGTTTGGCTGTTGCGGATGCAAACGTAGTACATGACAAACAGTTCCAGCTCATCAGTGTGACTGCAGAAAAGTGGGTTCCTATCATTGAAGTCCCAGTGGATAGTTTGAAGGTCTTCCTTGAGAGAAAGAAACGAGAAGGCTTTTCAATTTTGGGACTAGAGCAAACTGCAAATAGTGTACCGCTTGACCAGTATAGCTTTCCTAAAAAGACGGTACTGGTCCTTGGGCGTGAAAAGGAAGGTATACCGGTGGATATCATTCATATTCTGGATGCTTGCATTGAGATTCCACAGTTGGGAGTTGTTCGATCTTTAAATGTTCATGTCAGCGGTGCCATTGCGCTGTGGGAATATACTCGACAGCAGAGATCATCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008649 GO:0008757 GO:0009451 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016072 GO:0016423 GO:0016435 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030488 GO:0031167 GO:0031323 GO:0031326 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070039 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:0140102 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

1141

Amino Acids

128.21

Weight (kDa)

5.94

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17610 AT4G17610 AT4G17610
fragaria_vesca	FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370
malus_domestica	MD04G1055600.v1.1
prunus_persica	Prupe.5G055400_v2.0.a1 Prupe.5G055400_v2.0.a1
pyrus_communis	pycom04g04890
rosa_chinensis	RchiOBHm_Chr7g0205631
rosa_laevigata	RLG00000003369
rosa_multiflora	Rmu_ssc0000482.1_g000025
rosa_roxburghii	Rroxscaffold_3G00252130
rosa_rugosa	Rorug07G0092300
rosa_samantha	Rh7AG223100 Rh7AG230100 Rh7BG218100 Rh7CG236300 Rh7DG230000
rosa_wichuraiana	Rw7G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	551, 1607
Acc36I	ACCTGC	1 cut(s)	2095
AccB1I	GGYRCC	1 cut(s)	3374
AccB7I	CCANNNNNTGG	1 cut(s)	2347
AccI	GTMKAC	1 cut(s)	3286
AclWI	GGATC	6 cut(s)	363, 495, 951, 1733, 1846, 1938
AcsI	RAATTY	9 cut(s)	29, 152, 230, 360, 812, 1240, 1518, 1757, 2833
AcuI	CTGAAG	6 cut(s)	158, 392, 1004, 1520, 1731, 2061
AcvI	CACGTG	1 cut(s)	1784
AfaI	GTAC	9 cut(s)	121, 1059, 1613, 1983, 2129, 2583, 3072, 3222, 3258
AfiI	CCNNNNNNNGG	4 cut(s)	2146, 2347, 2560, 3338
AflII	CTTAAG	2 cut(s)	52, 2686
AgeI	ACCGGT	1 cut(s)	3289
AhlI	ACTAGT	2 cut(s)	913, 2161
AjiI	CACGTC	1 cut(s)	1070
AjnI	CCWGG	6 cut(s)	224, 273, 637, 1489, 2448, 3009
Alw21I	GWGCWC	2 cut(s)	763, 2610
Alw26I	GTCTC	4 cut(s)	119, 149, 335, 848
Alw44I	GTGCAC	1 cut(s)	759
AlwI	GGATC	6 cut(s)	363, 495, 951, 1733, 1846, 1938
AlwNI	CAGNNNCTG	3 cut(s)	845, 857, 2911
Ama87I	CYCGRG	1 cut(s)	2567
AoxI	GGCC	8 cut(s)	664, 1282, 1493, 1579, 1732, 2192, 2394, 3007
ApaLI	GTGCAC	1 cut(s)	759
ApoI	RAATTY	9 cut(s)	29, 152, 230, 360, 812, 1240, 1518, 1757, 2833
AseI	ATTAAT	2 cut(s)	482, 2121
AsiGI	ACCGGT	1 cut(s)	3289
Asp700I	GAANNNNTTC	3 cut(s)	2283, 2637, 3155
AspA2I	CCTAGG	1 cut(s)	1598
AspLEI	GCGC	3 cut(s)	475, 2475, 3385
AspS9I	GGNCC	8 cut(s)	192, 665, 1282, 1493, 1579, 1733, 2394, 3262
AsuC2I	CCSGG	1 cut(s)	2555
AsuHPI	GGTGA	4 cut(s)	1193, 1691, 1833, 2309
AsuII	TTCGAA	1 cut(s)	1937
AsuNHI	GCTAGC	1 cut(s)	1813
AvaI	CYCGRG	1 cut(s)	2567
AvaII	GGWCC	2 cut(s)	192, 3262
AvrII	CCTAGG	1 cut(s)	1598
AxyI	CCTNAGG	1 cut(s)	2196
BaeGI	GKGCMC	2 cut(s)	253, 763
BanI	GGYRCC	1 cut(s)	3374
BauI	CACGAG	2 cut(s)	252, 468
BbrPI	CACGTG	1 cut(s)	1784
BbsI	GAAGAC	4 cut(s)	219, 1359, 1422, 3148
Bbv12I	GWGCWC	2 cut(s)	763, 2610
BccI	CCATC	7 cut(s)	203, 613, 974, 1322, 2149, 2322, 2731
BceAI	ACGGC	2 cut(s)	663, 2813
BciT130I	CCWGG	6 cut(s)	226, 275, 639, 1491, 2450, 3011
BcnI	CCSGG	1 cut(s)	2555
BcoDI	GTCTC	4 cut(s)	119, 149, 335, 848
BcuI	ACTAGT	2 cut(s)	913, 2161
BfmI	CTRYAG	6 cut(s)	115, 444, 2088, 2509, 2912, 3105
BfrI	CTTAAG	2 cut(s)	52, 2686
BfuAI	ACCTGC	1 cut(s)	2095
BglII	AGATCT	3 cut(s)	440, 2635, 2690
BlnI	CCTAGG	1 cut(s)	1598
BmcAI	AGTACT	2 cut(s)	121, 1613
Bme1390I	CCNGG	7 cut(s)	226, 275, 639, 1491, 2450, 2555, 3011
Bme18I	GGWCC	2 cut(s)	192, 3262
BmeT110I	CYCGRG	1 cut(s)	2567
BmgBI	CACGTC	1 cut(s)	1070
BmgT120I	GGNCC	8 cut(s)	192, 665, 1282, 1493, 1579, 1733, 2394, 3262
BmiI	GGNNCC	2 cut(s)	3120, 3376
BmrFI	CCNGG	7 cut(s)	226, 275, 639, 1491, 2450, 2555, 3011
BmrI	ACTGGG	6 cut(s)	153, 867, 2335, 2511, 3131, 3412
BmtI	GCTAGC	1 cut(s)	1817
BmuI	ACTGGG	6 cut(s)	153, 867, 2335, 2511, 3131, 3412
BpiI	GAAGAC	4 cut(s)	219, 1359, 1422, 3148
BpmI	CTGGAG	3 cut(s)	822, 1254, 1544
Bpu10I	CCTNAGC	2 cut(s)	1743, 2904
Bpu14I	TTCGAA	1 cut(s)	1937
BpuEI	CTTGAG	4 cut(s)	1235, 1919, 2235, 3182
BpuMI	CCSGG	1 cut(s)	2555
BsaAI	YACGTR	2 cut(s)	1784, 1985
BsaBI	GATNNNNATC	2 cut(s)	2546, 2700
BsaI	GGTCTC	2 cut(s)	149, 335
BsaJI	CCNNGG	7 cut(s)	23, 225, 1002, 1293, 1490, 1598, 3265
BsaWI	WCCGGW	1 cut(s)	3289
BsaXI	ACNNNNNCTCC	4 cut(s)	551, 581, 1041, 1071
Bsc4I	CCNNNNNNNGG	4 cut(s)	2146, 2347, 2560, 3338
Bse118I	RCCGGY	1 cut(s)	3289
Bse21I	CCTNAGG	1 cut(s)	2196
Bse3DI	GCAATG	2 cut(s)	2937, 3378
Bse8I	GATNNNNATC	2 cut(s)	2546, 2700
BseBI	CCWGG	6 cut(s)	226, 275, 639, 1491, 2450, 3011
BseDI	CCNNGG	7 cut(s)	23, 225, 1002, 1293, 1490, 1598, 3265
BseGI	GGATG	8 cut(s)	686, 1342, 1445, 2235, 2309, 3064, 3319, 3413
BseJI	GATNNNNATC	2 cut(s)	2546, 2700
BseLI	CCNNNNNNNGG	4 cut(s)	2146, 2347, 2560, 3338
BseMI	GCAATG	2 cut(s)	2937, 3378
BseMII	CTCAG	7 cut(s)	114, 1191, 1204, 1273, 1734, 2210, 2918
BseSI	GKGCMC	2 cut(s)	253, 763
BseYI	CCCAGC	2 cut(s)	2537, 2754
BsgI	GTGCAG	3 cut(s)	1092, 1404, 2042
BshFI	GGCC	8 cut(s)	666, 1284, 1495, 1581, 1734, 2194, 2396, 3009
BshNI	GGYRCC	1 cut(s)	3374
BshTI	ACCGGT	1 cut(s)	3289
BsiHKAI	GWGCWC	2 cut(s)	763, 2610
BsiHKCI	CYCGRG	1 cut(s)	2567
BsiSI	CCGG	2 cut(s)	2554, 3290
BslFI	GGGAC	5 cut(s)	1527, 2150, 2499, 3119, 3210
BslI	CCNNNNNNNGG	4 cut(s)	2146, 2347, 2560, 3338
BsmAI	GTCTC	4 cut(s)	119, 149, 335, 848
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	5 cut(s)	1527, 2150, 2499, 3119, 3210
BsmI	GAATGC	3 cut(s)	1234, 1441, 1658
BsnI	GGCC	8 cut(s)	666, 1284, 1495, 1581, 1734, 2194, 2396, 3009
Bso31I	GGTCTC	2 cut(s)	149, 335
BsoBI	CYCGRG	1 cut(s)	2567
Bsp119I	TTCGAA	1 cut(s)	1937
Bsp1286I	GDGCHC	3 cut(s)	253, 763, 2610
BspANI	GGCC	8 cut(s)	666, 1284, 1495, 1581, 1734, 2194, 2396, 3009
BspCNI	CTCAG	7 cut(s)	115, 1190, 1203, 1272, 1735, 2209, 2917
BspHI	TCATGA	1 cut(s)	1696
BspLI	GGNNCC	2 cut(s)	3120, 3376
BspMAI	CTGCAG	4 cut(s)	119, 2092, 2916, 3109
BspMI	ACCTGC	1 cut(s)	2095
BspOI	GCTAGC	1 cut(s)	1817
BspPI	GGATC	6 cut(s)	363, 495, 951, 1733, 1846, 1938
BspT104I	TTCGAA	1 cut(s)	1937
BspT107I	GGYRCC	1 cut(s)	3374
BspTI	CTTAAG	2 cut(s)	52, 2686
BspTNI	GGTCTC	2 cut(s)	149, 335
BsrDI	GCAATG	2 cut(s)	2937, 3378
BsrFI	RCCGGY	1 cut(s)	3289
BssAI	RCCGGY	1 cut(s)	3289
BssECI	CCNNGG	7 cut(s)	23, 225, 1002, 1293, 1490, 1598, 3265
BssNAI	GTATAC	1 cut(s)	3287
BssSI	CACGAG	2 cut(s)	252, 468
BssT1I	CCWWGG	4 cut(s)	23, 1002, 1598, 3265
Bst1107I	GTATAC	1 cut(s)	3287
Bst2BI	CACGAG	2 cut(s)	252, 468
Bst2UI	CCWGG	6 cut(s)	226, 275, 639, 1491, 2450, 3011
Bst6I	CTCTTC	3 cut(s)	2212, 2414, 2985
BstAFI	CTTAAG	2 cut(s)	52, 2686
BstAPI	GCANNNNNTGC	3 cut(s)	114, 1415, 2660
BstBAI	YACGTR	2 cut(s)	1784, 1985
BstBI	TTCGAA	1 cut(s)	1937
BstC8I	GCNNGC	8 cut(s)	631, 714, 1469, 1815, 2057, 2950, 3007, 3319
BstDEI	CTNAG	8 cut(s)	123, 615, 1177, 1190, 1259, 1743, 2196, 2904
BstF5I	GGATG	8 cut(s)	686, 1342, 1445, 2235, 2309, 3064, 3319, 3413
BstHHI	GCGC	3 cut(s)	475, 2475, 3385
BstMAI	GTCTC	4 cut(s)	119, 149, 335, 848
BstMWI	GCNNNNNNNGC	8 cut(s)	114, 887, 908, 1415, 1793, 2252, 2660, 3011
BstNI	CCWGG	6 cut(s)	226, 275, 639, 1491, 2450, 3011
BstNSI	RCATGY	4 cut(s)	273, 605, 1385, 1471
BstSCI	CCNGG	7 cut(s)	224, 273, 637, 1489, 2448, 2553, 3009
BstSFI	CTRYAG	6 cut(s)	115, 444, 2088, 2509, 2912, 3105
BstSLI	GKGCMC	2 cut(s)	253, 763
BstV2I	GAAGAC	4 cut(s)	219, 1359, 1422, 3148
BstX2I	RGATCY	5 cut(s)	440, 943, 1930, 2635, 2690
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	5 cut(s)	440, 943, 1930, 2635, 2690
BstZ17I	GTATAC	1 cut(s)	3287
Bsu36I	CCTNAGG	1 cut(s)	2196
BsuRI	GGCC	8 cut(s)	666, 1284, 1495, 1581, 1734, 2194, 2396, 3009
BtrI	CACGTC	1 cut(s)	1070
BtsCI	GGATG	8 cut(s)	686, 1342, 1445, 2235, 2309, 3064, 3319, 3413
BtsIMutI	CAGTG	7 cut(s)	299, 651, 1966, 2592, 2774, 3103, 3144
BveI	ACCTGC	1 cut(s)	2095
Cac8I	GCNNGC	8 cut(s)	631, 714, 1469, 1815, 2057, 2950, 3007, 3319
CaiI	CAGNNNCTG	3 cut(s)	845, 857, 2911
CciI	TCATGA	1 cut(s)	1696
CfoI	GCGC	3 cut(s)	475, 2475, 3385
Cfr10I	RCCGGY	1 cut(s)	3289
Cfr13I	GGNCC	8 cut(s)	192, 665, 1282, 1493, 1579, 1733, 2394, 3262
Csp6I	GTAC	9 cut(s)	120, 1058, 1612, 1982, 2128, 2582, 3071, 3221, 3257
CspAI	ACCGGT	1 cut(s)	3289
CviQI	GTAC	9 cut(s)	120, 1058, 1612, 1982, 2128, 2582, 3071, 3221, 3257
DdeI	CTNAG	8 cut(s)	123, 615, 1177, 1190, 1259, 1743, 2196, 2904
DraI	TTTAAA	3 cut(s)	1137, 2619, 3357
Eam1104I	CTCTTC	3 cut(s)	2212, 2414, 2985
EarI	CTCTTC	3 cut(s)	2212, 2414, 2985
EciI	GGCGGA	1 cut(s)	878
Eco130I	CCWWGG	4 cut(s)	23, 1002, 1598, 3265
Eco147I	AGGCCT	1 cut(s)	2194
Eco31I	GGTCTC	2 cut(s)	149, 335
Eco32I	GATATC	1 cut(s)	3298
Eco47I	GGWCC	2 cut(s)	192, 3262
Eco57I	CTGAAG	6 cut(s)	158, 392, 1004, 1520, 1731, 2061
Eco72I	CACGTG	1 cut(s)	1784
Eco81I	CCTNAGG	1 cut(s)	2196
Eco88I	CYCGRG	1 cut(s)	2567
EcoO109I	RGGNCCY	3 cut(s)	665, 1733, 2394
EcoRI	GAATTC	2 cut(s)	152, 812
EcoRII	CCWGG	6 cut(s)	224, 273, 637, 1489, 2448, 3009
EcoRV	GATATC	1 cut(s)	3298
EcoT14I	CCWWGG	4 cut(s)	23, 1002, 1598, 3265
EcoT22I	ATGCAT	3 cut(s)	781, 1473, 2248
ErhI	CCWWGG	4 cut(s)	23, 1002, 1598, 3265
Esp3I	CGTCTC	1 cut(s)	119
FalI	AAGNNNNNCTT	6 cut(s)	60, 92, 642, 674, 2880, 2912
FaqI	GGGAC	5 cut(s)	1527, 2150, 2499, 3119, 3210
FauI	CCCGC	2 cut(s)	393, 1553
FauNDI	CATATG	5 cut(s)	883, 1473, 2021, 2063, 2212
FblI	GTMKAC	1 cut(s)	3286
FokI	GGATG	8 cut(s)	673, 1349, 1432, 2222, 2296, 3071, 3326, 3400
GlaI	GCGC	3 cut(s)	474, 2474, 3384
GsaI	CCCAGC	2 cut(s)	2541, 2758
GsuI	CTGGAG	3 cut(s)	822, 1254, 1544
HaeIII	GGCC	8 cut(s)	666, 1284, 1495, 1581, 1734, 2194, 2396, 3009
HapII	CCGG	2 cut(s)	2554, 3290
HhaI	GCGC	3 cut(s)	475, 2475, 3385
Hin6I	GCGC	3 cut(s)	473, 2473, 3383
HinP1I	GCGC	3 cut(s)	473, 2473, 3383
HincII	GTYRAC	1 cut(s)	674
HindII	GTYRAC	1 cut(s)	674
HindIII	AAGCTT	3 cut(s)	131, 2683, 2894
HpaII	CCGG	2 cut(s)	2554, 3290
HphI	GGTGA	4 cut(s)	1193, 1691, 1833, 2309
Hpy99I	CGWCG	1 cut(s)	1071
HpyCH4IV	ACGT	6 cut(s)	1069, 1783, 1984, 2014, 2050, 3066
HpyF10VI	GCNNNNNNNGC	8 cut(s)	114, 887, 908, 1415, 1793, 2252, 2660, 3011
HpyF3I	CTNAG	8 cut(s)	123, 615, 1177, 1190, 1259, 1743, 2196, 2904
HpySE526I	ACGT	6 cut(s)	1069, 1783, 1984, 2014, 2050, 3066
HspAI	GCGC	3 cut(s)	473, 2473, 3383
LmnI	GCTCC	4 cut(s)	403, 901, 2155, 2599
MaeII	ACGT	6 cut(s)	1069, 1783, 1984, 2014, 2050, 3066
MaeIII	GTNAC	8 cut(s)	841, 949, 1391, 1638, 2010, 2527, 2589, 3100
MfeI	CAATTG	1 cut(s)	1044
MflI	RGATCY	5 cut(s)	440, 943, 1930, 2635, 2690
MhlI	GDGCHC	3 cut(s)	253, 763, 2610
MlyI	GAGTC	3 cut(s)	435, 1057, 2381
MmeI	TCCRAC	1 cut(s)	921
Mph1103I	ATGCAT	3 cut(s)	781, 1473, 2248
MroXI	GAANNNNTTC	3 cut(s)	2283, 2637, 3155
MslI	CAYNNNNRTG	8 cut(s)	617, 725, 754, 1472, 1476, 2274, 2969, 3098
MspA1I	CMGCKG	2 cut(s)	704, 3372
MspCI	CTTAAG	2 cut(s)	52, 2686
MspI	CCGG	2 cut(s)	2554, 3290
MspR9I	CCNGG	7 cut(s)	226, 275, 639, 1491, 2450, 2555, 3011
MunI	CAATTG	1 cut(s)	1044
Mva1269I	GAATGC	3 cut(s)	1234, 1441, 1658
MvaI	CCWGG	6 cut(s)	226, 275, 639, 1491, 2450, 3011
MwoI	GCNNNNNNNGC	8 cut(s)	114, 887, 908, 1415, 1793, 2252, 2660, 3011
NciI	CCSGG	1 cut(s)	2555
NdeI	CATATG	5 cut(s)	883, 1473, 2021, 2063, 2212
NheI	GCTAGC	1 cut(s)	1813
NlaIV	GGNNCC	2 cut(s)	3120, 3376
NmuCI	GTSAC	6 cut(s)	949, 1638, 2010, 2527, 2589, 3100
NsiI	ATGCAT	3 cut(s)	781, 1473, 2248
NspI	RCATGY	4 cut(s)	273, 605, 1385, 1471
NspV	TTCGAA	1 cut(s)	1937
PaeI	GCATGC	1 cut(s)	1471
PaeR7I	CTCGAG	1 cut(s)	2567
PagI	TCATGA	1 cut(s)	1696
PceI	AGGCCT	1 cut(s)	2194
PcsI	WCGNNNNNNNCGW	1 cut(s)	1066
PctI	GAATGC	3 cut(s)	1234, 1441, 1658
PdmI	GAANNNNTTC	3 cut(s)	2283, 2637, 3155
PfeI	GAWTC	8 cut(s)	221, 464, 848, 998, 1106, 1877, 1910, 3328
PflFI	GACNNNGTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	2347
PinAI	ACCGGT	1 cut(s)	3289
PleI	GAGTC	3 cut(s)	434, 1057, 2381
PmaCI	CACGTG	1 cut(s)	1784
PmlI	CACGTG	1 cut(s)	1784
PpsI	GAGTC	3 cut(s)	434, 1057, 2381
Ppu21I	YACGTR	2 cut(s)	1784, 1985
PshBI	ATTAAT	2 cut(s)	482, 2121
PsiI	TTATAA	2 cut(s)	551, 1607
Psp6I	CCWGG	6 cut(s)	224, 273, 637, 1489, 2448, 3009
PspCI	CACGTG	1 cut(s)	1784
PspFI	CCCAGC	2 cut(s)	2537, 2754
PspGI	CCWGG	6 cut(s)	224, 273, 637, 1489, 2448, 3009
PspN4I	GGNNCC	2 cut(s)	3120, 3376
PspPI	GGNCC	8 cut(s)	192, 665, 1282, 1493, 1579, 1733, 2394, 3262
PspXI	VCTCGAGB	1 cut(s)	2567
PsrI	GAACNNNNNNTAC	2 cut(s)	2120, 2152
PstI	CTGCAG	4 cut(s)	119, 2092, 2916, 3109
PstNI	CAGNNNCTG	3 cut(s)	845, 857, 2911
PsuI	RGATCY	5 cut(s)	440, 943, 1930, 2635, 2690
PsyI	GACNNNGTC	1 cut(s)	425
RsaI	GTAC	9 cut(s)	121, 1059, 1613, 1983, 2129, 2583, 3072, 3222, 3258
RsaNI	GTAC	9 cut(s)	120, 1058, 1612, 1982, 2128, 2582, 3071, 3221, 3257
RseI	CAYNNNNRTG	8 cut(s)	617, 725, 754, 1472, 1476, 2274, 2969, 3098
Sau96I	GGNCC	8 cut(s)	192, 665, 1282, 1493, 1579, 1733, 2394, 3262
ScaI	AGTACT	2 cut(s)	121, 1613
SchI	GAGTC	3 cut(s)	435, 1057, 2381
ScrFI	CCNGG	7 cut(s)	226, 275, 639, 1491, 2450, 2555, 3011
SduI	GDGCHC	3 cut(s)	253, 763, 2610
SfcI	CTRYAG	6 cut(s)	115, 444, 2088, 2509, 2912, 3105
Sfr274I	CTCGAG	1 cut(s)	2567
SfuI	TTCGAA	1 cut(s)	1937
SinI	GGWCC	2 cut(s)	192, 3262
SlaI	CTCGAG	1 cut(s)	2567
SmiMI	CAYNNNNRTG	8 cut(s)	617, 725, 754, 1472, 1476, 2274, 2969, 3098
SmlI	CTYRAG	7 cut(s)	52, 1214, 1898, 2250, 2567, 2686, 3161
SmoI	CTYRAG	7 cut(s)	52, 1214, 1898, 2250, 2567, 2686, 3161
SpeI	ACTAGT	2 cut(s)	913, 2161
SphI	GCATGC	1 cut(s)	1471
SseBI	AGGCCT	1 cut(s)	2194
SspI	AATATT	1 cut(s)	1890
StuI	AGGCCT	1 cut(s)	2194
StyD4I	CCNGG	7 cut(s)	224, 273, 637, 1489, 2448, 2553, 3009
StyI	CCWWGG	4 cut(s)	23, 1002, 1598, 3265
TaiI	ACGT	6 cut(s)	1072, 1786, 1987, 2017, 2053, 3069
TaqI	TCGA	6 cut(s)	1066, 1662, 1937, 2568, 3349, 3400
TatI	WGTACW	4 cut(s)	119, 1611, 2127, 3070
TauI	GCSGC	1 cut(s)	2669
TfiI	GAWTC	8 cut(s)	221, 464, 848, 998, 1106, 1877, 1910, 3328
TscAI	CASTG	7 cut(s)	306, 651, 1966, 2592, 2781, 3103, 3144
TseFI	GTSAC	6 cut(s)	949, 1638, 2010, 2527, 2589, 3100
Tsp45I	GTSAC	6 cut(s)	949, 1638, 2010, 2527, 2589, 3100
TspGWI	ACGGA	3 cut(s)	1075, 2612, 3031
TspRI	CASTG	7 cut(s)	306, 651, 1966, 2592, 2781, 3103, 3144
Tth111I	GACNNNGTC	1 cut(s)	425
Van91I	CCANNNNNTGG	1 cut(s)	2347
Vha464I	CTTAAG	2 cut(s)	52, 2686
VneI	GTGCAC	1 cut(s)	759
VpaK11BI	GGWCC	2 cut(s)	192, 3262
VspI	ATTAAT	2 cut(s)	482, 2121
XapI	RAATTY	9 cut(s)	29, 152, 230, 360, 812, 1240, 1518, 1757, 2833
XbaI	TCTAGA	2 cut(s)	1906, 2918
XceI	RCATGY	4 cut(s)	273, 605, 1385, 1471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2327
XhoI	CTCGAG	1 cut(s)	2567
XmaJI	CCTAGG	1 cut(s)	1598
XmiI	GTMKAC	1 cut(s)	3286
XmnI	GAANNNNTTC	3 cut(s)	2283, 2637, 3155
ZrmI	AGTACT	2 cut(s)	121, 1613
Zsp2I	ATGCAT	3 cut(s)	781, 1473, 2248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.