Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008435

Physical Location & Seq

Genomic Coordinates Reverse (-)

21837382 .. 21845245

Gene Structure 7864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG230100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGCTCCTCTTATCACTTCACTCTCCACCAGCTTCAGCCAAGTCCCTCCGGCGGCTGTTCCGGCCGTCTTGGATTGCATTTTGGCCTCTACCGGCGTATCTCGGTCGTCGCTATTCGCTTCGCTTCTCGACACTTTCACCAAGCTCTCTGAGGGTGTCATGAAAAACGACCAGAAGTTGGACTCCCATGTCTGTAACTATCTGGCATCATTGGTTGGGGCACTTTGTCACCTTCTAAAGAAATTTGACACTAATCTTGGTGCTTTGGAATCATTTATATGGAAATGTTTTCTTCCATTGATAAAGATGGCACACATGTTCAGCCGCAATATGCTTAACCAGATTACAGAATCGTTTATTAATGCTGTGACTGAGACAAACACCTGGATAGTTGTGGAGGCAACACTGGTGCCAATTTTTCTAACATTAGTTGCCAGTTCTATTGGTAGGCCTGAAAAGGAAGTATCAGATACTTTTCAGTTCATGTTGGGATCTAATGACCGGGTAAATCATATGGAAATGAGTACAAAAAACATCCTTTCGCCACCTGGATCACCTTCGCTGCCAATTTCATGCCACATCCTAACCTTAATGCTTGATGCTGTCCTTCAAAGCAAGAAAATAGCTGCCTCCTCAGAATCAATAATTGCAAATGGGTGTTTTGATGATAATTTTGCTGGTAAATTGACTTGGGGTCTTTGTAGCTTGACTGAGCAATTGCTTTTACAAAATTTGGAACACCGGTCCTGTGCTACTGCCTTTCTTCTCGCAATCATTTTCAAAGCATTTTCTTCTTATTGCTCTTTTCAAATCTCAATAGATGGGCAGACCTTTACACTTTCAAGGAACAACTTTATGAAAATTTGGAAGTGCTGTGGGACACTGTTTTCTCTTGGAACCGTGGAGAGAAGAGATGCTTTTGGCGTGCTCTCCTTGTACCTGTCTTTTTTTCCTTTTACAGAAGAAAGTGGAGATACCAACATGAGTGATAAAGTGGAATGTTTTGATATAAGAGCTGAAACAAAATTTTGGGACGAGATTAAAAGAGGCCTGGAGAGCTTAGTGAGGAAGCAATCGTTACACATCTTAAAGATAGCACTACGCGTAAATGGAGCAGCCCAATCCTCCGGTGTTTTAGAGGATATATTGGCTGAAAATAATTCAATTCCTCACAGCATGACAAAGAGGGAGCTGTGGGCTGATAAGGAAGCTAAATCTCTGGGTGTGGGGAAAATATGTAGCCAAGTTGAGTCTTCTCTGGACAGCCAGAACAAGTGGGACGCATTTGTATTGCTGTATGAAATGCTTGAAGAGTATGGAACTCACCTCGTTGAAGCAGCTTGGAATTACCAGGAGATTCTGGAAATGTTGAGGAAAATGAGCCAAATTATCCCGGAAGTGGAAGAATTCAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008649 GO:0008757 GO:0009451 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016072 GO:0016423 GO:0016435 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030488 GO:0031167 GO:0031323 GO:0031326 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070039 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:0140102 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

472

Amino Acids

52.54

Weight (kDa)

5.42

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17610 AT4G17610 AT4G17610
fragaria_vesca	FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370
malus_domestica	MD04G1055600.v1.1
prunus_persica	Prupe.5G055400_v2.0.a1 Prupe.5G055400_v2.0.a1
pyrus_communis	pycom04g04890
rosa_chinensis	RchiOBHm_Chr7g0205631
rosa_laevigata	RLG00000003369
rosa_multiflora	Rmu_ssc0000482.1_g000025
rosa_roxburghii	Rroxscaffold_3G00252130
rosa_rugosa	Rorug07G0092300
rosa_samantha	Rh7AG223100 Rh7AG230100 Rh7BG218100 Rh7CG236300 Rh7DG230000
rosa_wichuraiana	Rw7G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	409
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccII	CGCG	1 cut(s)	1104
AciI	CCGC	2 cut(s)	53, 325
AclWI	GGATC	2 cut(s)	499, 559
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	5 cut(s)	242, 730, 861, 1025, 1406
AcuI	CTGAAG	1 cut(s)	19
AfaI	GTAC	2 cut(s)	526, 938
AfiI	CCNNNNNNNGG	3 cut(s)	52, 178, 1399
AflIII	ACRYGT	2 cut(s)	315, 1102
AgeI	ACCGGT	1 cut(s)	741
AgsI	TTSAA	8 cut(s)	611, 781, 809, 843, 1164, 1310, 1334, 1411
AhdI	GACNNNNNGTC	1 cut(s)	693
AjnI	CCWGG	4 cut(s)	383, 547, 1050, 1350
AluBI	AGCT	9 cut(s)	33, 145, 626, 705, 1016, 1059, 1192, 1211, 1340
AluI	AGCT	9 cut(s)	33, 145, 626, 705, 1016, 1059, 1192, 1211, 1340
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	2 cut(s)	499, 559
AoxI	GGCC	4 cut(s)	63, 84, 449, 1048
ApeKI	GCWGC	4 cut(s)	562, 626, 1115, 1337
ApoI	RAATTY	5 cut(s)	242, 730, 861, 1025, 1406
AseI	ATTAAT	1 cut(s)	360
AsiGI	ACCGGT	1 cut(s)	741
AspS9I	GGNCC	1 cut(s)	744
AsuC2I	CCSGG	2 cut(s)	503, 1394
AsuHPI	GGTGA	4 cut(s)	130, 221, 546, 1316
AvaII	GGWCC	1 cut(s)	744
BaeGI	GKGCMC	1 cut(s)	223
BaeI	ACNNNNGTAYC	2 cut(s)	81, 114
BanI	GGYRCC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	1245
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	4 cut(s)	549, 613, 1127, 1349
BccI	CCATC	2 cut(s)	301, 815
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	4 cut(s)	385, 549, 1052, 1352
BcnI	CCSGG	2 cut(s)	503, 1394
BcoDI	GTCTC	1 cut(s)	368
BisI	GCNGC	6 cut(s)	54, 325, 563, 627, 1116, 1338
BlsI	GCNGC	6 cut(s)	55, 326, 564, 628, 1117, 1339
Bme1390I	CCNGG	6 cut(s)	385, 503, 549, 1052, 1352, 1394
Bme18I	GGWCC	1 cut(s)	744
BmeRI	GACNNNNNGTC	1 cut(s)	693
BmgT120I	GGNCC	1 cut(s)	744
BmiI	GGNNCC	3 cut(s)	6, 411, 898
BmrFI	CCNGG	6 cut(s)	385, 503, 549, 1052, 1352, 1394
BmsI	GCATC	3 cut(s)	215, 589, 904
BpiI	GAAGAC	1 cut(s)	1245
BpmI	CTGGAG	1 cut(s)	1073
BpuMI	CCSGG	2 cut(s)	503, 1394
BsaJI	CCNNGG	1 cut(s)	900
BsaWI	WCCGGW	2 cut(s)	741, 1127
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 178, 1399
Bse118I	RCCGGY	2 cut(s)	92, 741
Bse1I	ACTGG	2 cut(s)	411, 435
BseBI	CCWGG	4 cut(s)	385, 549, 1052, 1352
BseDI	CCNNGG	1 cut(s)	900
BseGI	GGATG	2 cut(s)	534, 579
BseLI	CCNNNNNNNGG	3 cut(s)	52, 178, 1399
BseMII	CTCAG	4 cut(s)	141, 363, 648, 702
BseNI	ACTGG	2 cut(s)	411, 435
BseRI	GAGGAG	1 cut(s)	622
BseSI	GKGCMC	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	4 cut(s)	549, 613, 1127, 1349
Bsh1236I	CGCG	1 cut(s)	1104
Bsh1285I	CGRYCG	2 cut(s)	66, 107
BshFI	GGCC	4 cut(s)	65, 86, 451, 1050
BshNI	GGYRCC	1 cut(s)	409
BshTI	ACCGGT	1 cut(s)	741
BsiEI	CGRYCG	2 cut(s)	66, 107
BsiHKAI	GWGCWC	1 cut(s)	930
BsiSI	CCGG	7 cut(s)	50, 62, 93, 502, 742, 1128, 1394
BslFI	GGGAC	4 cut(s)	29, 892, 1046, 1292
BslI	CCNNNNNNNGG	3 cut(s)	52, 178, 1399
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	4 cut(s)	29, 892, 1046, 1292
BsnI	GGCC	4 cut(s)	65, 86, 451, 1050
Bsp1286I	GDGCHC	2 cut(s)	223, 930
Bsp143I	GATC	2 cut(s)	491, 551
BspACI	CCGC	2 cut(s)	53, 325
BspANI	GGCC	4 cut(s)	65, 86, 451, 1050
BspCNI	CTCAG	4 cut(s)	142, 364, 647, 703
BspFNI	CGCG	1 cut(s)	1104
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	6, 411, 898
BspPI	GGATC	2 cut(s)	499, 559
BspT107I	GGYRCC	1 cut(s)	409
BsrFI	RCCGGY	2 cut(s)	92, 741
BsrI	ACTGG	2 cut(s)	411, 435
BssAI	RCCGGY	2 cut(s)	92, 741
BssECI	CCNNGG	1 cut(s)	900
BssMI	GATC	2 cut(s)	491, 551
Bst2UI	CCWGG	4 cut(s)	385, 549, 1052, 1352
Bst4CI	ACNGT	2 cut(s)	885, 901
Bst6I	CTCTTC	2 cut(s)	904, 1305
BstC8I	GCNNGC	1 cut(s)	926
BstDEI	CTNAG	5 cut(s)	150, 372, 634, 711, 1060
BstDSI	CCRYGG	1 cut(s)	900
BstF5I	GGATG	2 cut(s)	534, 579
BstFNI	CGCG	1 cut(s)	1104
BstKTI	GATC	2 cut(s)	494, 554
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	2 cut(s)	491, 551
BstMCI	CGRYCG	2 cut(s)	66, 107
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 1056
BstNI	CCWGG	4 cut(s)	385, 549, 1052, 1352
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	6 cut(s)	383, 501, 547, 1050, 1350, 1392
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	1 cut(s)	1104
BstV1I	GCAGC	4 cut(s)	549, 613, 1127, 1349
BstV2I	GAAGAC	1 cut(s)	1245
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	4 cut(s)	65, 86, 451, 1050
BtgI	CCRYGG	1 cut(s)	900
BtsCI	GGATG	2 cut(s)	534, 579
BtsIMutI	CAGTG	2 cut(s)	404, 881
Cac8I	GCNNGC	1 cut(s)	926
CciI	TCATGA	1 cut(s)	159
Cfr10I	RCCGGY	2 cut(s)	92, 741
Cfr13I	GGNCC	1 cut(s)	744
CseI	GACGC	1 cut(s)	1289
Csp6I	GTAC	2 cut(s)	525, 937
CspAI	ACCGGT	1 cut(s)	741
CviAII	CATG	7 cut(s)	160, 188, 316, 484, 573, 982, 1177
CviQI	GTAC	2 cut(s)	525, 937
DdeI	CTNAG	5 cut(s)	150, 372, 634, 711, 1060
DpnI	GATC	2 cut(s)	493, 553
DpnII	GATC	2 cut(s)	491, 551
DrdI	GACNNNNNNGTC	1 cut(s)	188
DriI	GACNNNNNGTC	1 cut(s)	693
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	904, 1305
Eam1105I	GACNNNNNGTC	1 cut(s)	693
EarI	CTCTTC	2 cut(s)	904, 1305
EclXI	CGGCCG	1 cut(s)	63
Eco147I	AGGCCT	2 cut(s)	451, 1050
Eco47I	GGWCC	1 cut(s)	744
Eco52I	CGGCCG	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	1406
EcoRII	CCWGG	4 cut(s)	383, 547, 1050, 1350
FaeI	CATG	7 cut(s)	163, 191, 319, 487, 576, 985, 1180
FalI	AAGNNNNNCTT	2 cut(s)	901, 933
FaqI	GGGAC	4 cut(s)	29, 892, 1046, 1292
FatI	CATG	7 cut(s)	159, 187, 315, 483, 572, 981, 1176
FauNDI	CATATG	1 cut(s)	513
Fnu4HI	GCNGC	6 cut(s)	54, 325, 563, 627, 1116, 1338
FokI	GGATG	2 cut(s)	521, 566
Fsp4HI	GCNGC	6 cut(s)	54, 325, 563, 627, 1116, 1338
GluI	GCNGC	6 cut(s)	54, 325, 563, 627, 1116, 1338
GsuI	CTGGAG	1 cut(s)	1073
HaeIII	GGCC	4 cut(s)	65, 86, 451, 1050
HapII	CCGG	7 cut(s)	50, 62, 93, 502, 742, 1128, 1394
HgaI	GACGC	1 cut(s)	1289
Hin1II	CATG	7 cut(s)	163, 191, 319, 487, 576, 985, 1180
HinfI	GANTC	6 cut(s)	182, 269, 350, 638, 1250, 1357
HpaII	CCGG	7 cut(s)	50, 62, 93, 502, 742, 1128, 1394
HphI	GGTGA	4 cut(s)	130, 221, 546, 1316
Hpy188I	TCNGA	3 cut(s)	151, 469, 637
Hpy188III	TCNNGA	4 cut(s)	128, 160, 1259, 1361
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	242, 567, 617
HpyCH4III	ACNGT	2 cut(s)	885, 901
HpyCH4V	TGCA	2 cut(s)	78, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 1056
HpyF3I	CTNAG	5 cut(s)	150, 372, 634, 711, 1060
Hsp92II	CATG	7 cut(s)	163, 191, 319, 487, 576, 985, 1180
Kzo9I	GATC	2 cut(s)	491, 551
LmnI	GCTCC	3 cut(s)	10, 1112, 1189
Lsp1109I	GCAGC	4 cut(s)	549, 613, 1127, 1349
LweI	GCATC	3 cut(s)	215, 589, 904
MaeIII	GTNAC	4 cut(s)	194, 227, 367, 1077
MalI	GATC	2 cut(s)	493, 553
MboI	GATC	2 cut(s)	491, 551
MboII	GAAGA	8 cut(s)	284, 755, 783, 921, 974, 1245, 1322, 1415
MfeI	CAATTG	1 cut(s)	716
MflI	RGATCY	1 cut(s)	491
MhlI	GDGCHC	2 cut(s)	223, 930
MluI	ACGCGT	1 cut(s)	1102
MlyI	GAGTC	2 cut(s)	176, 1259
MmeI	TCCRAC	1 cut(s)	159
MseI	TTAA	6 cut(s)	336, 360, 590, 1041, 1088, 1417
MslI	CAYNNNNRTG	1 cut(s)	277
MspI	CCGG	7 cut(s)	50, 62, 93, 502, 742, 1128, 1394
MspR9I	CCNGG	6 cut(s)	385, 503, 549, 1052, 1352, 1394
MunI	CAATTG	1 cut(s)	716
MvaI	CCWGG	4 cut(s)	385, 549, 1052, 1352
MvnI	CGCG	1 cut(s)	1104
MwoI	GCNNNNNNNGC	2 cut(s)	62, 1056
NciI	CCSGG	2 cut(s)	503, 1394
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	2 cut(s)	491, 551
NlaIII	CATG	7 cut(s)	163, 191, 319, 487, 576, 985, 1180
NlaIV	GGNNCC	3 cut(s)	6, 411, 898
NmuCI	GTSAC	2 cut(s)	227, 367
NspI	RCATGY	1 cut(s)	319
PagI	TCATGA	1 cut(s)	159
PceI	AGGCCT	2 cut(s)	451, 1050
PciI	ACATGT	1 cut(s)	315
PfeI	GAWTC	4 cut(s)	269, 350, 638, 1357
PflMI	CCANNNNNTGG	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	1392
PinAI	ACCGGT	1 cut(s)	741
PkrI	GCNGC	6 cut(s)	55, 326, 564, 628, 1117, 1339
PleI	GAGTC	2 cut(s)	176, 1258
PpsI	GAGTC	2 cut(s)	176, 1258
PscI	ACATGT	1 cut(s)	315
PshBI	ATTAAT	1 cut(s)	360
Psp6I	CCWGG	4 cut(s)	383, 547, 1050, 1350
PspGI	CCWGG	4 cut(s)	383, 547, 1050, 1350
PspN4I	GGNNCC	3 cut(s)	6, 411, 898
PspPI	GGNCC	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	491
RsaI	GTAC	2 cut(s)	526, 938
RsaNI	GTAC	2 cut(s)	525, 937
RseI	CAYNNNNRTG	1 cut(s)	277
SaqAI	TTAA	6 cut(s)	336, 360, 590, 1041, 1088, 1417
SatI	GCNGC	6 cut(s)	54, 325, 563, 627, 1116, 1338
Sau3AI	GATC	2 cut(s)	491, 551
Sau96I	GGNCC	1 cut(s)	744
SchI	GAGTC	2 cut(s)	176, 1259
ScrFI	CCNGG	6 cut(s)	385, 503, 549, 1052, 1352, 1394
SduI	GDGCHC	2 cut(s)	223, 930
SfaNI	GCATC	3 cut(s)	215, 589, 904
SinI	GGWCC	1 cut(s)	744
SmiMI	CAYNNNNRTG	1 cut(s)	277
SseBI	AGGCCT	2 cut(s)	451, 1050
SsiI	CCGC	2 cut(s)	53, 325
StuI	AGGCCT	2 cut(s)	451, 1050
StyD4I	CCNGG	6 cut(s)	383, 501, 547, 1050, 1350, 1392
TaaI	ACNGT	2 cut(s)	885, 901
TaqI	TCGA	1 cut(s)	129
TaqII	GACCGA	1 cut(s)	93
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	2 cut(s)	56, 327
TfiI	GAWTC	4 cut(s)	269, 350, 638, 1357
Tru1I	TTAA	6 cut(s)	336, 360, 590, 1041, 1088, 1417
Tru9I	TTAA	6 cut(s)	336, 360, 590, 1041, 1088, 1417
TscAI	CASTG	2 cut(s)	411, 888
TseFI	GTSAC	2 cut(s)	227, 367
TseI	GCWGC	4 cut(s)	562, 626, 1115, 1337
Tsp45I	GTSAC	2 cut(s)	227, 367
TspDTI	ATGAA	5 cut(s)	176, 472, 561, 872, 1314
TspRI	CASTG	2 cut(s)	411, 888
Van91I	CCANNNNNTGG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	744
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	5 cut(s)	242, 730, 861, 1025, 1406
XceI	RCATGY	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.