Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008435

Physical Location & Seq

Genomic Coordinates Reverse (-)

18649096 .. 18670329

Gene Structure 21234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG218100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5364 bp

ATGTCTACACAAGAAACCCACTCTATGGCTACTCTTATCACTACACTCTCCACCAGCTTCAGCCAAGTCCCTCCGGCGGCTGTTCCGGCCGTCTTGGATTGCATTTTGGCCTCTACCGGCGTATCTCGGTCGTCGCTATTCGCTTCGCTTCTCGACACTTTCACCAAGCTCTCTGAGGGTGTCATGAAAAACGACCAGAAGTTGGACTCCCATGACTGTAACTATCTGGCATCATTGGTTGGGGCACTTTGTCACCTTCTAAAGAAATTTGACACTAATCTTGGTGCTTTGGAATCATTTATATGGAAATGTTTTCTTCCATTGATAAAGATGGCACACATGTTCAGCCGCAATATGCTTAACCAGATTACAGAATCGTTTATTAATGCTGTGACTGAGACAAACACCTGGGTAGTTGTGGAGGCAACACTGGTGCCAATTTTTCTAACATTAGTTGCTAGTTCTATTGGTATGCCTGAAAAGGAAGTATCAGATACTTTTCATTTCATGTTGGGATCTAATGACCGGGTAAATCATATGGAAATGAGTACAAAAAACATCCTTTCGCCACCTGGATCACCTTCGCTGCCAATTTCATGCCACATCCTAACCTTAATGCTTGATGCTGTCCTTCAAAGCAAGAAAATAGCTGCCTCCTCAGAATCAATAATTGCAAATGGGTGTTTTGATGATAATTTTGCTGGTAAATTGACTTGGGGTCTTTGTAGCTTGACTGAGCAATTGCTTTTACAAAATTTGGAACACCGGTCCTGTGCTACTGCCTTTCTTCTCCCAATCATTTTCAAAGCATTTTCTTCTTATTGCTCTTTTCAAATCTCAATAGATGGGCAGACCTTTACACTTTCAAGGAACAATTTCTTTATGAAAATTTGGAAGTGCTGTGGGACACTGTTTTCTCTTGGAACCGTGGAGAGAAGAGATGCTTTTGGCGTACTCTCCTTGTACCTATCTTTTTTTCCTTTTACAGAAGAAAGTGGCGATACCAACATGAGTGATAAAGTGGAATGTTTTGATATAAGAGCTGAAACAAAATTTTGGGACGAGATTAAAAGAGGCCTGGTTGATAAGGAGAGCTTAGTGAGGAAGCAATCGTTACACATCTTAAAGATAGCACTACGCATAAATGGAGCAGCCCAATCCTCCGGTGTTTTAGAGGATATATCGGCTGAAAATAATTCAATGCCTCACGGCATGACAAAGAGGGAGCTGTGGGCTGATAAGGAAGCTAAATCTCTGGGTGTGGGGAAAATATGTAGCCAAGTTGAGTCTTCTCTGGACAGCCAGAACAAGTGGGAGGCATTTGTATTGCTGTATGAAATGCTTGAAGAGTATGGAACTCACCTCGTTGAAGCAGCTTGGAATTACCAGGTATCCTTGTTACTTCGAAACTCTAGCTCAGATGCTAATAATAAAACCTCTATCAGTGGAGCAGTTCATCAAAACCAGATCGAAAGTCCAGGAGAAATCTTTAACTGGTTAGCAATTTTGTGGGAACGGGGTTTTAATCATGACAATCCTCAAGTTAGGTGCTTGATCATGCAGTCATTTTTAGGGATTGATTGGAAGAATTACTGCACACATGCAAGATCGGTGCCTGGATATTTTGTTCTTGGTTCATTTATACAAGGGCTAAATGACCCTGTGCATCACAAAGAATTTGGTGTAAAAGGAATATACTCCTCAATGACAATAGAAGGTGCAGCTAACTTTCTAAGCAAATATACAAGTTATCTGAATGTGAGGAAGTGCATTATGTTTTTGAGTGACTTAGCATCTGCTGCTAAGCTGCAACCTCTTGGTAGAGTTGGATTGATGTGCCTTGCTGAATGCATTTCTTCTGCTGCTTGTCAAGTCGGAAAGAATAATAGTGAAATTGATGCACAGTGCTTTGAAGATGGAGTTCATGACATGATCGAAGTGGGAAAGTCTCCTCACAATGACAAAATTGTTTTGCTTGATGCCTTGAGATTTATTATTGAGAGCAGCAAACAACATTTCAATTCTAATTATCGTCTTCGAGTTTGTGAGAAAGTCCTTGACTCTGCTGCTTCAGTGGTGTGTACCTGTGATCTGCCTCTTGATGTACTTTTGCACTTCATTTCAACATTTCCATGGGAGTTCACTGATCATGGTGGTCCCTTAAGAGAGAAAATACGACAATGGCTTATGGGGTGTGGTAAGCGTTGTAGTGTCAACTGCTGCAGTACTGAAATGAAGCTCCTGAAGAGTCTTTATGACTTTCCAAATAGGTTTACGAGCCATTGCAATGATGATGCTTCAACCACTTTTGACGATGAAGATTTGGATGCATGGGAATTTGAAGCGAAGCGGTGGGCAAGAGTGCTCTTTATTGCATGCAAGGAGGAATATCAATTGTTACCCATACTGATGTTTATTCAAAATCACGGTAGTGATGTCTGCAAACAAAACAATAAGATGGACCTATTTCCTGTGAAGTTTTTCATCCTCATCTTGAGTCTAGTTCTGGAGCTTCAGATGATGCAAGAAAGAGTTGCCAAACATGGTTCTAAGCTTAGAACCGAATCAGAGTTTTTTGTGCCAGAATCAATGAATGAATTTAGTCATGCAGATGTTCCTAATTTATATCAAAAGTTCACTGACATTTTTCTTCTCATATTGGAGGAGTTGGTCTCTTTTGCAAACTTGTCTTGTTCCATATTCTCAAATAACAATACCACTAAGACGAGAGATGCAACCCTTCCTGGTTCTGTAACCGGAAAACTTGGAGGACCTAGTCAACGCCGGTTGTCATCTTCTACCACTACTGCTGTATTGCAAGCAATTATGTCCATGAAAGCTGTTGCAACTATCTCCTCATTCTGTGCACGAGTTAAAACTGATGTTTCACTTGATCTTCCTATTAATTTTTTGTGGGATTTCTACTGGAAGACTATTTCATCTCCAGCTTGTGATTCAGAGACTGGAGCAGAAATACGTCTTGCAGCATATGAAGCGTTAGCTCCTACTCTCACAGCACTAGTGTCTGTGTGTTCTCCTCAAACTTTGGATATGCTTAAGAAAAATGACAGCTCATTACTATCAGATGGCAAACCTCTGTTGGATTCTTTGGTGCTTTCTTTTCTTCAGAACATAAATAAGCTCCTTACAGTTGGAGTATTTGTACGCTCTCGACGTGCAATTTTAATGAATTGGAAGTGGATTTGCCTAGAATCTCTATTGTCAATTCCTTGCTATGCTCTTAGGAATGGGCTTCTTCTAGAGGCAAATAATTTTGTCTTCTCAGGTGCTGCTCTCCGATGTATTTTTTCTGATATTCTTGAGAGCCTTGAGAATGCTGGGGAAGGTTCTGTTTTACCGATGCTCAGATCTGTCCGATTAGTTTTGGACTTATTTGCCCAAGGAAAGTCTGGTTCACTTGTCTGCTTATGTGATGGGGTGGATTCCCAGATGCTGTGGCATTTGGTTCGTTCTTCTTGGATATTGCATGTCAGTTGCAACAAGCGGAAGGTTGCACCTATTGCTGCACTTTTGTCTTCTGTTCTCCATTCATCTCTATTTAGTGATGAGAGCATGCATATAATTGATGGTGCACCTGGGCCTCTGAAGTGGTTTGTTGAGAAAATTCTAGAGGAAGGCACGAAAAGTCCCCGTACAATTCGTCTTGCTGCATTACACTTAACAGGGCTGTGGCTATCATATCCTAGGATTATAAAGTACTATGTGAAGGAGCTGAAGCTGCTGTCTCTACATGGTTCCGTTGCATTCGATGAGGACTTCGAAGGTGAATTAGCTGATAATCGTGATACCAGGGCTGAAGTTTCTTTGTTGGCAAAAGGCCCTGATCCTGAGCTGACCAAAGCATTTATTAATACAGAGTTGTATGCACGAGCCTCTGTTGCTGTTCTGTTTTACAAGCTAGCAGACATGGCTGTCATGGTGGGATCAACTAATGAAAATGCAGATTGCCATGCAGCTTTGGAATCTGGAAAAATGTTTTTGCTTGAGCTTCTTGATTCCGCGGTAAACGACAAGGATCTTGCAAAAGAGTTGTATAAGAAGTATAGTGCAATTCATAGAAGAAAGGTACGGGCATGGCAAATGATATGTATTTTGTCACATTTCGTCTGTCAAGATATAGTTTCAGAAGTTGCACGTTGCTTGCACACATCCCTCTATAGGAACAACTTACCTGCAGTTCGTCAATATTTGGAAACATTTGCAATTAATATATACTTAAAGTTTCCATCACTGGTTGGGGAGCAACTAGTTCCTATATTAAGAGATTATGACATGAGGCCTCAGGCTCTCTCTTCTTACGTATTTATAGCAGCTAACGTCATCCTCCATGCATCTCAATCTGTTCAACACCGACATCTGAATGAATTACTTCCTCCTATAGTTCCACTATTAACCTCACATCACCACAGTCTACGTGGTTTCACCCAGTTGCTGGTTTACCAAGTTCTTTGCAAATTGTTCCTTCCATTGGATTCTAAAGCCTCTGAAACTATGACTTTAGAGAAGAGGTGTTTTGAGGATCTCAAATCCTACCTCGCAAAGAATTCTGATTGTACGCGCTTACGACAATCAATGGAAGGATATCTTGATGCCTACAGTCCCGATAGCTCGGTCACTCCTGCGGGCGTTTTCATCAACCGGGTTGAGGACGTCGAGTTTGAATGTGTACCAATATCCCTTATGGAGCAAGTGCTCAACTTTCTGAATGATGTGAGGGAAGACCTTCGAAATTCAATGGCAAAGGATGTTGTGACTATTAAGAATGAGAGTTTGAGATCTGATGGAGATCAAGACCGCATGGCGATACTGTCTAATGCTAATGAAAGAAAATTGAGTACCCAGCTGCCTAAAGATATCTCACTAGATTTTCAGAAGAAGATTACTCTGTCTAAACACGAGAAGCAAGACATAAACGTTAATTCTTTCTTGGGCAACCAAGAAACTTACAAACAACTTCAGGAAATAGAAAAGGACGATAAGCTTCTTGCTCAGGTGCTGCAGTCTAGAACTCTAGGAATGGAAAGAGAGAGATCAAGCAGACAACGTCTTATCCTTGTAGCATCTCTGCTTGATCGGATACCTAACCTAGCTGGCCTTGCACGGACTTGTGAGGTATTTAAAGCATCAAGTTTGGCCATTGCGGATACGAACGTGTTACATGACAAACAGTTCCAACTCATCAGTGTGACTGCAGAGAAGTGGGTTCCTATCATTGAAGTCCCAGTGAATAGTTTGAAGGTGTTCCTTCAGAAAAAGAAACGAGAAGGCTTCTCAATTTTAGGACTAGAGCAGACTGCAAATAGTATACCTCTTGATCAATATATATTTCCAAAAGACACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008649 GO:0008757 GO:0009451 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016072 GO:0016423 GO:0016435 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030488 GO:0031167 GO:0031323 GO:0031326 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070039 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:0140102 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

1787

Amino Acids

200.36

Weight (kDa)

6.08

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	1690 - 1784	1.2e-06	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17610 AT4G17610 AT4G17610
fragaria_vesca	FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370
malus_domestica	MD04G1055600.v1.1
prunus_persica	Prupe.5G055400_v2.0.a1 Prupe.5G055400_v2.0.a1
pyrus_communis	pycom04g04890
rosa_chinensis	RchiOBHm_Chr7g0205631
rosa_laevigata	RLG00000003369
rosa_multiflora	Rmu_ssc0000482.1_g000025
rosa_roxburghii	Rroxscaffold_3G00252130
rosa_rugosa	Rorug07G0092300
rosa_samantha	Rh7AG223100 Rh7AG230100 Rh7BG218100 Rh7CG236300 Rh7DG230000
rosa_wichuraiana	Rw7G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3713
AasI	GACNNNNNNGTC	1 cut(s)	3932
AatII	GACGTC	1 cut(s)	4674
Acc36I	ACCTGC	1 cut(s)	4201
AccB1I	GGYRCC	2 cut(s)	433, 1612
AccB7I	CCANNNNNTGG	3 cut(s)	25, 202, 4453
AccI	GTMKAC	3 cut(s)	5, 4432, 5326
AccII	CGCG	2 cut(s)	4022, 4579
AciI	CCGC	9 cut(s)	77, 349, 2350, 3505, 4020, 4022, 4643, 4816, 5162
AclI	AACGTT	1 cut(s)	4935
AclWI	GGATC	6 cut(s)	523, 583, 3839, 3952, 4044, 4548
AcoI	YGGCCR	2 cut(s)	87, 5154
AcyI	GRCGYC	1 cut(s)	4671
AfiI	CCNNNNNNNGG	7 cut(s)	25, 76, 202, 4179, 4453, 4489, 4666
AflII	CTTAAG	2 cut(s)	2161, 3056
AflIII	ACRYGT	2 cut(s)	339, 5172
AgeI	ACCGGT	1 cut(s)	765
AhdI	GACNNNNNGTC	1 cut(s)	717
AhlI	ACTAGT	2 cut(s)	3019, 4267
AjiI	CACGTC	1 cut(s)	3176
AjnI	CCWGG	9 cut(s)	407, 571, 1077, 1386, 1477, 1615, 2743, 3595, 3809
AleI	CACNNNNGTG	1 cut(s)	2430
AloI	GAACNNNNNNTCC	2 cut(s)	1611, 1643
Alw21I	GWGCWC	4 cut(s)	2367, 2869, 3595, 4716
Alw26I	GTCTC	5 cut(s)	392, 1953, 2677, 2954, 3750
Alw44I	GTGCAC	2 cut(s)	2865, 3591
AlwI	GGATC	6 cut(s)	523, 583, 3839, 3952, 4044, 4548
AlwNI	CAGNNNCTG	5 cut(s)	2963, 3290, 3454, 4453, 5017
AoxI	GGCC	8 cut(s)	87, 108, 1075, 3599, 3838, 4298, 5113, 5154
ApaLI	GTGCAC	2 cut(s)	2865, 3591
ArsI	GACNNNNNNTTYG	2 cut(s)	4661, 4693
AseI	ATTAAT	4 cut(s)	384, 2904, 3870, 4227
AsiGI	ACCGGT	1 cut(s)	765
Asp700I	GAANNNNTTC	5 cut(s)	875, 2480, 4389, 4743, 5261
AspA2I	CCTAGG	1 cut(s)	3704
AspLEI	GCGC	1 cut(s)	4581
AspS9I	GGNCC	6 cut(s)	768, 2156, 2461, 2771, 3599, 3839
AsuC2I	CCSGG	2 cut(s)	527, 4661
AsuHPI	GGTGA	7 cut(s)	154, 245, 570, 1352, 3797, 4415, 4435
AsuII	TTCGAA	3 cut(s)	1405, 3780, 4747
AsuNHI	GCTAGC	1 cut(s)	3919
AvaII	GGWCC	4 cut(s)	768, 2156, 2461, 2771
AvrII	CCTAGG	1 cut(s)	3704
AxyI	CCTNAGG	1 cut(s)	4302
BaeGI	GKGCMC	3 cut(s)	247, 2869, 3595
BaeI	ACNNNNGTAYC	4 cut(s)	105, 138, 5157, 5190
BalI	TGGCCA	1 cut(s)	5156
BanI	GGYRCC	2 cut(s)	433, 1612
BauI	CACGAG	3 cut(s)	2868, 3888, 4916
BbsI	GAAGAC	6 cut(s)	1281, 2027, 2936, 3271, 3528, 4746
Bbv12I	GWGCWC	4 cut(s)	2367, 2869, 3595, 4716
BccI	CCATC	9 cut(s)	325, 839, 1910, 2452, 3080, 3428, 3581, 4255, 4796
BceAI	ACGGC	2 cut(s)	74, 1225
BcgI	CGANNNNNNTGC	2 cut(s)	3449, 3483
BciT130I	CCWGG	9 cut(s)	409, 573, 1079, 1388, 1479, 1617, 2745, 3597, 3811
BciVI	GTATCC	3 cut(s)	1402, 5091, 5158
BclI	TGATCA	3 cut(s)	1554, 2146, 5335
BcnI	CCSGG	2 cut(s)	527, 4661
BcoDI	GTCTC	5 cut(s)	392, 1953, 2677, 2954, 3750
BcuI	ACTAGT	2 cut(s)	3019, 4267
BfmI	CTRYAG	7 cut(s)	2221, 4177, 4194, 4398, 4615, 5018, 5211
BfrI	CTTAAG	2 cut(s)	2161, 3056
BfuAI	ACCTGC	1 cut(s)	4201
BfuI	GTATCC	3 cut(s)	1402, 5091, 5158
BglII	AGATCT	2 cut(s)	3368, 4796
BlnI	CCTAGG	1 cut(s)	3704
BlpI	GCTNAGC	1 cut(s)	1803
BmcAI	AGTACT	2 cut(s)	2227, 3719
Bme18I	GGWCC	4 cut(s)	768, 2156, 2461, 2771
BmeRI	GACNNNNNGTC	1 cut(s)	717
BmgBI	CACGTC	1 cut(s)	3176
BmgT120I	GGNCC	6 cut(s)	768, 2156, 2461, 2771, 3599, 3839
BmiI	GGNNCC	6 cut(s)	435, 925, 1614, 2158, 3757, 5226
BmrI	ACTGGG	2 cut(s)	4441, 5237
BmtI	GCTAGC	1 cut(s)	3923
BmuI	ACTGGG	2 cut(s)	4441, 5237
BpiI	GAAGAC	6 cut(s)	1281, 2027, 2936, 3271, 3528, 4746
BplI	GAGNNNNNCTC	2 cut(s)	2657, 2689
BpmI	CTGGAG	3 cut(s)	2528, 2928, 2985
Bpu10I	CCTNAGC	2 cut(s)	3849, 5010
Bpu1102I	GCTNAGC	1 cut(s)	1803
Bpu14I	TTCGAA	3 cut(s)	1405, 3780, 4747
BpuEI	CTTGAG	6 cut(s)	1524, 2005, 2515, 3341, 3350, 4025
BpuMI	CCSGG	2 cut(s)	527, 4661
BsaAI	YACGTR	2 cut(s)	4321, 4436
BsaBI	GATNNNNATC	1 cut(s)	4806
BsaHI	GRCGYC	1 cut(s)	4671
BsaI	GGTCTC	1 cut(s)	2677
BsaJI	CCNNGG	8 cut(s)	408, 927, 2132, 3400, 3596, 3704, 3810, 4020
BsaWI	WCCGGW	3 cut(s)	765, 1163, 2756
BsaXI	ACNNNNNCTCC	2 cut(s)	3147, 3177
Bsc4I	CCNNNNNNNGG	7 cut(s)	25, 76, 202, 4179, 4453, 4489, 4666
Bse118I	RCCGGY	3 cut(s)	116, 765, 2784
Bse1I	ACTGG	7 cut(s)	435, 1499, 2930, 2968, 4257, 4447, 5243
Bse21I	CCTNAGG	1 cut(s)	4302
Bse3DI	GCAATG	3 cut(s)	2281, 2293, 5157
Bse8I	GATNNNNATC	1 cut(s)	4806
BseBI	CCWGG	9 cut(s)	409, 573, 1079, 1388, 1479, 1617, 2745, 3597, 3811
BseDI	CCNNGG	8 cut(s)	408, 927, 2132, 3400, 3596, 3704, 3810, 4020
BseGI	GGATG	7 cut(s)	558, 603, 2332, 2484, 4169, 4341, 4771
BseJI	GATNNNNATC	1 cut(s)	4806
BseLI	CCNNNNNNNGG	7 cut(s)	25, 76, 202, 4179, 4453, 4489, 4666
BseMI	GCAATG	3 cut(s)	2281, 2293, 5157
BseNI	ACTGG	7 cut(s)	435, 1499, 2930, 2968, 4257, 4447, 5243
BseRI	GAGGAG	6 cut(s)	646, 1690, 1941, 2678, 2845, 3027
BseSI	GKGCMC	3 cut(s)	247, 2869, 3595
BseX3I	CGGCCG	1 cut(s)	87
BseYI	CCCAGC	2 cut(s)	3338, 4860
BsgI	GTGCAG	3 cut(s)	1579, 1740, 3510
Bsh1236I	CGCG	2 cut(s)	4022, 4579
Bsh1285I	CGRYCG	2 cut(s)	90, 131
BshFI	GGCC	8 cut(s)	89, 110, 1077, 3601, 3840, 4300, 5115, 5156
BshNI	GGYRCC	2 cut(s)	433, 1612
BshTI	ACCGGT	1 cut(s)	765
BsiEI	CGRYCG	2 cut(s)	90, 131
BsiHKAI	GWGCWC	4 cut(s)	2367, 2869, 3595, 4716
BsiSI	CCGG	9 cut(s)	74, 86, 117, 526, 766, 1164, 2757, 2785, 4660
BslFI	GGGAC	7 cut(s)	53, 919, 1073, 2142, 3633, 4605, 5225
BslI	CCNNNNNNNGG	7 cut(s)	25, 76, 202, 4179, 4453, 4489, 4666
BsmAI	GTCTC	5 cut(s)	392, 1953, 2677, 2954, 3750
BsmFI	GGGAC	7 cut(s)	53, 919, 1073, 2142, 3633, 4605, 5225
BsmI	GAATGC	3 cut(s)	1853, 3340, 3764
BsnI	GGCC	8 cut(s)	89, 110, 1077, 3601, 3840, 4300, 5115, 5156
Bso31I	GGTCTC	1 cut(s)	2677
Bsp119I	TTCGAA	3 cut(s)	1405, 3780, 4747
Bsp1286I	GDGCHC	5 cut(s)	247, 2367, 2869, 3595, 4716
Bsp1720I	GCTNAGC	1 cut(s)	1803
Bsp19I	CCATGG	1 cut(s)	2132
BspACI	CCGC	9 cut(s)	77, 349, 2350, 3505, 4020, 4022, 4643, 4816, 5162
BspANI	GGCC	8 cut(s)	89, 110, 1077, 3601, 3840, 4300, 5115, 5156
BspFNI	CGCG	2 cut(s)	4022, 4579
BspHI	TCATGA	3 cut(s)	183, 1528, 1924
BspLI	GGNNCC	6 cut(s)	435, 925, 1614, 2158, 3757, 5226
BspMAI	CTGCAG	4 cut(s)	2225, 4198, 5022, 5215
BspMI	ACCTGC	1 cut(s)	4201
BspOI	GCTAGC	1 cut(s)	3923
BspPI	GGATC	6 cut(s)	523, 583, 3839, 3952, 4044, 4548
BspT104I	TTCGAA	3 cut(s)	1405, 3780, 4747
BspT107I	GGYRCC	2 cut(s)	433, 1612
BspTI	CTTAAG	2 cut(s)	2161, 3056
BspTNI	GGTCTC	1 cut(s)	2677
BsrDI	GCAATG	3 cut(s)	2281, 2293, 5157
BsrFI	RCCGGY	3 cut(s)	116, 765, 2784
BsrI	ACTGG	7 cut(s)	435, 1499, 2930, 2968, 4257, 4447, 5243
BssAI	RCCGGY	3 cut(s)	116, 765, 2784
BssECI	CCNNGG	8 cut(s)	408, 927, 2132, 3400, 3596, 3704, 3810, 4020
BssNAI	GTATAC	1 cut(s)	5327
BssNI	GRCGYC	1 cut(s)	4671
BssSI	CACGAG	3 cut(s)	2868, 3888, 4916
BssT1I	CCWWGG	3 cut(s)	2132, 3400, 3704
Bst1107I	GTATAC	1 cut(s)	5327
Bst2BI	CACGAG	3 cut(s)	2868, 3888, 4916
Bst2UI	CCWGG	9 cut(s)	409, 573, 1079, 1388, 1479, 1617, 2745, 3597, 3811
Bst6I	CTCTTC	5 cut(s)	931, 1341, 2240, 4318, 4520
BstACI	GRCGYC	1 cut(s)	4671
BstAFI	CTTAAG	2 cut(s)	2161, 3056
BstAPI	GCANNNNNTGC	2 cut(s)	1799, 3521
BstBAI	YACGTR	2 cut(s)	4321, 4436
BstBI	TTCGAA	3 cut(s)	1405, 3780, 4747
BstC8I	GCNNGC	7 cut(s)	2377, 2820, 3575, 3921, 4163, 4645, 5113
BstDSI	CCRYGG	3 cut(s)	927, 2132, 4020
BstF5I	GGATG	7 cut(s)	558, 603, 2332, 2484, 4169, 4341, 4771
BstFNI	CGCG	2 cut(s)	4022, 4579
BstHHI	GCGC	1 cut(s)	4581
BstMAI	GTCTC	5 cut(s)	392, 1953, 2677, 2954, 3750
BstMCI	CGRYCG	2 cut(s)	90, 131
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 1799, 2993, 3521, 3739, 3899, 3929, 5117
BstNI	CCWGG	9 cut(s)	409, 573, 1079, 1388, 1479, 1617, 2745, 3597, 3811
BstNSI	RCATGY	5 cut(s)	343, 1604, 2379, 3491, 3577
BstSFI	CTRYAG	7 cut(s)	2221, 4177, 4194, 4398, 4615, 5018, 5211
BstSLI	GKGCMC	3 cut(s)	247, 2869, 3595
BstSNI	TACGTA	1 cut(s)	4321
BstUI	CGCG	2 cut(s)	4022, 4579
BstV2I	GAAGAC	6 cut(s)	1281, 2027, 2936, 3271, 3528, 4746
BstX2I	RGATCY	5 cut(s)	515, 3368, 4036, 4540, 4796
BstYI	RGATCY	5 cut(s)	515, 3368, 4036, 4540, 4796
BstZ17I	GTATAC	1 cut(s)	5327
BstZI	CGGCCG	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	4302
BsuI	GTATCC	3 cut(s)	1402, 5091, 5158
BsuRI	GGCC	8 cut(s)	89, 110, 1077, 3601, 3840, 4300, 5115, 5156
BtgI	CCRYGG	3 cut(s)	927, 2132, 4020
BtrI	CACGTC	1 cut(s)	3176
BtsCI	GGATG	7 cut(s)	558, 603, 2332, 2484, 4169, 4341, 4771
BveI	ACCTGC	1 cut(s)	4201
Cac8I	GCNNGC	7 cut(s)	2377, 2820, 3575, 3921, 4163, 4645, 5113
CaiI	CAGNNNCTG	5 cut(s)	2963, 3290, 3454, 4453, 5017
CciI	TCATGA	3 cut(s)	183, 1528, 1924
CfoI	GCGC	1 cut(s)	4581
Cfr10I	RCCGGY	3 cut(s)	116, 765, 2784
Cfr13I	GGNCC	6 cut(s)	768, 2156, 2461, 2771, 3599, 3839
Cfr42I	CCGCGG	1 cut(s)	4023
CsiI	ACCWGGT	1 cut(s)	1386
CspAI	ACCGGT	1 cut(s)	765
DraI	TTTAAA	1 cut(s)	5140
DrdI	GACNNNNNNGTC	1 cut(s)	3932
DriI	GACNNNNNGTC	1 cut(s)	717
DseDI	GACNNNNNNGTC	1 cut(s)	3932
EaeI	YGGCCR	2 cut(s)	87, 5154
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	5 cut(s)	931, 1341, 2240, 4318, 4520
Eam1105I	GACNNNNNGTC	1 cut(s)	717
EarI	CTCTTC	5 cut(s)	931, 1341, 2240, 4318, 4520
EclXI	CGGCCG	1 cut(s)	87
Eco105I	TACGTA	1 cut(s)	4321
Eco130I	CCWWGG	3 cut(s)	2132, 3400, 3704
Eco147I	AGGCCT	2 cut(s)	1077, 4300
Eco31I	GGTCTC	1 cut(s)	2677
Eco32I	GATATC	2 cut(s)	4604, 4876
Eco47I	GGWCC	4 cut(s)	768, 2156, 2461, 2771
Eco52I	CGGCCG	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	4302
EcoO109I	RGGNCCY	2 cut(s)	2771, 3839
EcoRI	GAATTC	1 cut(s)	4564
EcoRII	CCWGG	9 cut(s)	407, 571, 1077, 1386, 1477, 1615, 2743, 3595, 3809
EcoRV	GATATC	2 cut(s)	4604, 4876
EcoT14I	CCWWGG	3 cut(s)	2132, 3400, 3704
EcoT22I	ATGCAT	4 cut(s)	1853, 2332, 3579, 4354
ErhI	CCWWGG	3 cut(s)	2132, 3400, 3704
FalI	AAGNNNNNCTT	6 cut(s)	928, 960, 1079, 1111, 4590, 4622
FaqI	GGGAC	7 cut(s)	53, 919, 1073, 2142, 3633, 4605, 5225
FauI	CCCGC	1 cut(s)	4636
FauNDI	CATATG	2 cut(s)	537, 2989
FbaI	TGATCA	3 cut(s)	1554, 2146, 5335
FblI	GTMKAC	3 cut(s)	5, 4432, 5326
FokI	GGATG	7 cut(s)	545, 590, 2339, 2471, 4156, 4328, 4778
GlaI	GCGC	1 cut(s)	4580
GsaI	CCCAGC	2 cut(s)	3342, 4864
GsuI	CTGGAG	3 cut(s)	2528, 2928, 2985
HaeIII	GGCC	8 cut(s)	89, 110, 1077, 3601, 3840, 4300, 5115, 5156
HapII	CCGG	9 cut(s)	74, 86, 117, 526, 766, 1164, 2757, 2785, 4660
HhaI	GCGC	1 cut(s)	4581
Hin1I	GRCGYC	1 cut(s)	4671
Hin6I	GCGC	1 cut(s)	4579
HinP1I	GCGC	1 cut(s)	4579
HincII	GTYRAC	2 cut(s)	2215, 2780
HindII	GTYRAC	2 cut(s)	2215, 2780
HindIII	AAGCTT	2 cut(s)	2552, 5000
HpaII	CCGG	9 cut(s)	74, 86, 117, 526, 766, 1164, 2757, 2785, 4660
HphI	GGTGA	7 cut(s)	154, 245, 570, 1352, 3797, 4415, 4435
Hpy99I	CGWCG	3 cut(s)	136, 3177, 4676
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 1799, 2993, 3521, 3739, 3899, 3929, 5117
Hsp92I	GRCGYC	1 cut(s)	4671
HspAI	GCGC	1 cut(s)	4579
Ksp22I	TGATCA	3 cut(s)	1554, 2146, 5335
KspI	CCGCGG	1 cut(s)	4023
MabI	ACCWGGT	1 cut(s)	1386
MfeI	CAATTG	2 cut(s)	740, 2393
MflI	RGATCY	5 cut(s)	515, 3368, 4036, 4540, 4796
MhlI	GDGCHC	5 cut(s)	247, 2367, 2869, 3595, 4716
MlsI	TGGCCA	1 cut(s)	5156
MluNI	TGGCCA	1 cut(s)	5156
MlyI	GAGTC	5 cut(s)	200, 1295, 2054, 2257, 2506
MmeI	TCCRAC	6 cut(s)	183, 1807, 1855, 3081, 3133, 5218
Mox20I	TGGCCA	1 cut(s)	5156
Mph1103I	ATGCAT	4 cut(s)	1853, 2332, 3579, 4354
MroXI	GAANNNNTTC	5 cut(s)	875, 2480, 4389, 4743, 5261
MscI	TGGCCA	1 cut(s)	5156
MslI	CAYNNNNRTG	8 cut(s)	301, 2131, 2286, 2408, 2430, 2610, 4380, 5204
Msp20I	TGGCCA	1 cut(s)	5156
MspA1I	CMGCKG	2 cut(s)	4022, 4864
MspCI	CTTAAG	2 cut(s)	2161, 3056
MspI	CCGG	9 cut(s)	74, 86, 117, 526, 766, 1164, 2757, 2785, 4660
MunI	CAATTG	2 cut(s)	740, 2393
Mva1269I	GAATGC	3 cut(s)	1853, 3340, 3764
MvaI	CCWGG	9 cut(s)	409, 573, 1079, 1388, 1479, 1617, 2745, 3597, 3811
MvnI	CGCG	2 cut(s)	4022, 4579
MwoI	GCNNNNNNNGC	8 cut(s)	86, 1799, 2993, 3521, 3739, 3899, 3929, 5117
NciI	CCSGG	2 cut(s)	527, 4661
NcoI	CCATGG	1 cut(s)	2132
NdeI	CATATG	2 cut(s)	537, 2989
NheI	GCTAGC	1 cut(s)	3919
NlaIV	GGNNCC	6 cut(s)	435, 925, 1614, 2158, 3757, 5226
NmuCI	GTSAC	7 cut(s)	251, 391, 1784, 4116, 4633, 4771, 5206
NsiI	ATGCAT	4 cut(s)	1853, 2332, 3579, 4354
NspI	RCATGY	5 cut(s)	343, 1604, 2379, 3491, 3577
NspV	TTCGAA	3 cut(s)	1405, 3780, 4747
OliI	CACNNNNGTG	1 cut(s)	2430
PaeI	GCATGC	2 cut(s)	2379, 3577
PagI	TCATGA	3 cut(s)	183, 1528, 1924
PceI	AGGCCT	2 cut(s)	1077, 4300
PciI	ACATGT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	3172
PctI	GAATGC	3 cut(s)	1853, 3340, 3764
PdmI	GAANNNNTTC	5 cut(s)	875, 2480, 4389, 4743, 5261
PflFI	GACNNNGTC	2 cut(s)	2775, 5064
PflMI	CCANNNNNTGG	3 cut(s)	25, 202, 4453
PfoI	TCCNGGA	1 cut(s)	1477
PinAI	ACCGGT	1 cut(s)	765
PleI	GAGTC	5 cut(s)	200, 1294, 2054, 2256, 2505
PpsI	GAGTC	5 cut(s)	200, 1294, 2054, 2256, 2505
Ppu21I	YACGTR	2 cut(s)	4321, 4436
PpuMI	RGGWCCY	1 cut(s)	2771
PscI	ACATGT	1 cut(s)	339
PshBI	ATTAAT	4 cut(s)	384, 2904, 3870, 4227
PsiI	TTATAA	1 cut(s)	3713
Psp1406I	AACGTT	1 cut(s)	4935
Psp5II	RGGWCCY	1 cut(s)	2771
Psp6I	CCWGG	9 cut(s)	407, 571, 1077, 1386, 1477, 1615, 2743, 3595, 3809
PspFI	CCCAGC	2 cut(s)	3338, 4860
PspGI	CCWGG	9 cut(s)	407, 571, 1077, 1386, 1477, 1615, 2743, 3595, 3809
PspN4I	GGNNCC	6 cut(s)	435, 925, 1614, 2158, 3757, 5226
PspPI	GGNCC	6 cut(s)	768, 2156, 2461, 2771, 3599, 3839
PspPPI	RGGWCCY	1 cut(s)	2771
PstI	CTGCAG	4 cut(s)	2225, 4198, 5022, 5215
PstNI	CAGNNNCTG	5 cut(s)	2963, 3290, 3454, 4453, 5017
PsuI	RGATCY	5 cut(s)	515, 3368, 4036, 4540, 4796
PsyI	GACNNNGTC	2 cut(s)	2775, 5064
PvuII	CAGCTG	1 cut(s)	4864
RseI	CAYNNNNRTG	8 cut(s)	301, 2131, 2286, 2408, 2430, 2610, 4380, 5204
SacII	CCGCGG	1 cut(s)	4023
Sau96I	GGNCC	6 cut(s)	768, 2156, 2461, 2771, 3599, 3839
ScaI	AGTACT	2 cut(s)	2227, 3719
SchI	GAGTC	5 cut(s)	200, 1295, 2054, 2257, 2506
SduI	GDGCHC	5 cut(s)	247, 2367, 2869, 3595, 4716
SexAI	ACCWGGT	1 cut(s)	1386
SfcI	CTRYAG	7 cut(s)	2221, 4177, 4194, 4398, 4615, 5018, 5211
Sfr303I	CCGCGG	1 cut(s)	4023
SfuI	TTCGAA	3 cut(s)	1405, 3780, 4747
SgrBI	CCGCGG	1 cut(s)	4023
SinI	GGWCC	4 cut(s)	768, 2156, 2461, 2771
SmiMI	CAYNNNNRTG	8 cut(s)	301, 2131, 2286, 2408, 2430, 2610, 4380, 5204
SmlI	CTYRAG	8 cut(s)	1539, 1984, 2161, 2494, 3056, 3320, 3329, 4004
SmoI	CTYRAG	8 cut(s)	1539, 1984, 2161, 2494, 3056, 3320, 3329, 4004
SnaBI	TACGTA	1 cut(s)	4321
SpeI	ACTAGT	2 cut(s)	3019, 4267
SphI	GCATGC	2 cut(s)	2379, 3577
SseBI	AGGCCT	2 cut(s)	1077, 4300
SsiI	CCGC	9 cut(s)	77, 349, 2350, 3505, 4020, 4022, 4643, 4816, 5162
SspI	AATATT	1 cut(s)	4208
StuI	AGGCCT	2 cut(s)	1077, 4300
StyI	CCWWGG	3 cut(s)	2132, 3400, 3704
TaqII	GACCGA	2 cut(s)	117, 4621
TatI	WGTACW	4 cut(s)	548, 2104, 2225, 3717
TauI	GCSGC	2 cut(s)	80, 351
TseFI	GTSAC	7 cut(s)	251, 391, 1784, 4116, 4633, 4771, 5206
Tsp45I	GTSAC	7 cut(s)	251, 391, 1784, 4116, 4633, 4771, 5206
TspGWI	ACGGA	2 cut(s)	3748, 5137
Tth111I	GACNNNGTC	2 cut(s)	2775, 5064
Van91I	CCANNNNNTGG	3 cut(s)	25, 202, 4453
Vha464I	CTTAAG	2 cut(s)	2161, 3056
VneI	GTGCAC	2 cut(s)	2865, 3591
VpaK11BI	GGWCC	4 cut(s)	768, 2156, 2461, 2771
VspI	ATTAAT	4 cut(s)	384, 2904, 3870, 4227
XbaI	TCTAGA	3 cut(s)	3259, 3628, 5024
XceI	RCATGY	5 cut(s)	343, 1604, 2379, 3491, 3577
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3407, 4433
XmaJI	CCTAGG	1 cut(s)	3704
XmiI	GTMKAC	3 cut(s)	5, 4432, 5326
XmnI	GAANNNNTTC	5 cut(s)	875, 2480, 4389, 4743, 5261
ZraI	GACGTC	1 cut(s)	4672
ZrmI	AGTACT	2 cut(s)	2227, 3719
Zsp2I	ATGCAT	4 cut(s)	1853, 2332, 3579, 4354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.