tRNA rRNA methyltransferase (SpoU) family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17610 AT4G17610 AT4G17610 |
| fragaria_vesca | FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 |
| malus_domestica | MD04G1055600.v1.1 |
| prunus_persica | Prupe.5G055400_v2.0.a1 Prupe.5G055400_v2.0.a1 |
| pyrus_communis | pycom04g04890 |
| rosa_chinensis | RchiOBHm_Chr7g0205631 |
| rosa_laevigata | RLG00000003369 |
| rosa_multiflora | Rmu_ssc0000482.1_g000025 |
| rosa_roxburghii | Rroxscaffold_3G00252130 |
| rosa_rugosa | Rorug07G0092300 |
| rosa_samantha | Rh7AG223100 Rh7AG230100 Rh7BG218100 Rh7CG236300 Rh7DG230000 |
| rosa_wichuraiana | Rw7G019240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3914 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 2914, 4133 |
| AatII | GACGTC | 1 cut(s) | 3630 |
| AccB1I | GGYRCC | 2 cut(s) | 409, 1585 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 178 |
| AccIII | TCCGGA | 1 cut(s) | 1267 |
| AciI | CCGC | 6 cut(s) | 53, 325, 1163, 1780, 2326, 3706 |
| AclWI | GGATC | 4 cut(s) | 499, 559, 4040, 4153 |
| AcoI | YGGCCR | 1 cut(s) | 63 |
| AcsI | RAATTY | 9 cut(s) | 242, 730, 864, 1028, 1649, 2312, 2573, 3642, 3825 |
| AcuI | CTGAAG | 7 cut(s) | 19, 2028, 2474, 3086, 3827, 3956, 4038 |
| AcvI | CACGTG | 1 cut(s) | 1574 |
| AcyI | GRCGYC | 2 cut(s) | 2127, 3627 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 52, 178, 3454 |
| AflII | CTTAAG | 2 cut(s) | 2210, 3032 |
| AflIII | ACRYGT | 3 cut(s) | 315, 1571, 2057 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 693, 3551 |
| AhlI | ACTAGT | 1 cut(s) | 2995 |
| AjiI | CACGTC | 1 cut(s) | 3152 |
| AjnI | CCWGG | 9 cut(s) | 383, 547, 1053, 1359, 1450, 1588, 2719, 3796, 4010 |
| AleI | CACNNNNGTG | 1 cut(s) | 2406 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1584, 1616 |
| Alw21I | GWGCWC | 4 cut(s) | 2343, 2845, 3495, 3796 |
| Alw26I | GTCTC | 5 cut(s) | 368, 1926, 2653, 2922, 2930 |
| Alw44I | GTGCAC | 2 cut(s) | 2841, 3792 |
| AlwI | GGATC | 4 cut(s) | 499, 559, 4040, 4153 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2939, 3266 |
| Aor13HI | TCCGGA | 1 cut(s) | 1267 |
| AoxI | GGCC | 5 cut(s) | 63, 84, 1051, 3800, 4039 |
| ApaLI | GTGCAC | 2 cut(s) | 2841, 3792 |
| ApoI | RAATTY | 9 cut(s) | 242, 730, 864, 1028, 1649, 2312, 2573, 3642, 3825 |
| AseI | ATTAAT | 2 cut(s) | 360, 4071 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 851, 2456 |
| AspA2I | CCTAGG | 1 cut(s) | 3905 |
| AspS9I | GGNCC | 6 cut(s) | 744, 2205, 2437, 2747, 3800, 4040 |
| AsuC2I | CCSGG | 1 cut(s) | 503 |
| AsuHPI | GGTGA | 5 cut(s) | 130, 221, 546, 1325, 3998 |
| AsuII | TTCGAA | 2 cut(s) | 1378, 3981 |
| AsuNHI | GCTAGC | 1 cut(s) | 4120 |
| AvaII | GGWCC | 4 cut(s) | 744, 2205, 2437, 2747 |
| AvrII | CCTAGG | 1 cut(s) | 3905 |
| BaeGI | GKGCMC | 3 cut(s) | 223, 2845, 3796 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 81, 114 |
| BanI | GGYRCC | 2 cut(s) | 409, 1585 |
| BauI | CACGAG | 2 cut(s) | 2844, 4089 |
| BbrPI | CACGTG | 1 cut(s) | 1574 |
| BbsI | GAAGAC | 4 cut(s) | 1254, 2000, 2912, 3247 |
| Bbv12I | GWGCWC | 4 cut(s) | 2343, 2845, 3495, 3796 |
| BccI | CCATC | 8 cut(s) | 301, 815, 1883, 2428, 3056, 3404, 3782, 4320 |
| BceAI | ACGGC | 2 cut(s) | 50, 1582 |
| BciT130I | CCWGG | 9 cut(s) | 385, 549, 1055, 1361, 1452, 1590, 2721, 3798, 4012 |
| BciVI | GTATCC | 1 cut(s) | 1375 |
| BclI | TGATCA | 3 cut(s) | 1527, 1905, 2119 |
| BcnI | CCSGG | 1 cut(s) | 503 |
| BcoDI | GTCTC | 5 cut(s) | 368, 1926, 2653, 2922, 2930 |
| BcuI | ACTAGT | 1 cut(s) | 2995 |
| BfrI | CTTAAG | 2 cut(s) | 2210, 3032 |
| BfuI | GTATCC | 1 cut(s) | 1375 |
| BglII | AGATCT | 1 cut(s) | 3344 |
| BlnI | CCTAGG | 1 cut(s) | 3905 |
| BlpI | GCTNAGC | 1 cut(s) | 1776 |
| BmcAI | AGTACT | 2 cut(s) | 3428, 3920 |
| Bme18I | GGWCC | 4 cut(s) | 744, 2205, 2437, 2747 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 693, 3551 |
| BmgBI | CACGTC | 1 cut(s) | 3152 |
| BmgT120I | GGNCC | 6 cut(s) | 744, 2205, 2437, 2747, 3800, 4040 |
| BmiI | GGNNCC | 5 cut(s) | 411, 901, 1587, 2207, 3958 |
| BmrI | ACTGGG | 2 cut(s) | 3418, 3480 |
| BmtI | GCTAGC | 1 cut(s) | 4124 |
| BmuI | ACTGGG | 2 cut(s) | 3418, 3480 |
| BpiI | GAAGAC | 4 cut(s) | 1254, 2000, 2912, 3247 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2633, 2665 |
| BpmI | CTGGAG | 3 cut(s) | 2504, 2904, 2961 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4050 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1776 |
| Bpu14I | TTCGAA | 2 cut(s) | 1378, 3981 |
| BpuEI | CTTGAG | 6 cut(s) | 1497, 1978, 2491, 3317, 3326, 4226 |
| BpuMI | CCSGG | 1 cut(s) | 503 |
| BsaAI | YACGTR | 1 cut(s) | 1574 |
| BsaHI | GRCGYC | 2 cut(s) | 2127, 3627 |
| BsaI | GGTCTC | 1 cut(s) | 2653 |
| BsaJI | CCNNGG | 8 cut(s) | 384, 903, 2105, 3376, 3797, 3905, 4011, 4221 |
| BsaWI | WCCGGW | 4 cut(s) | 1139, 1267, 2732, 3555 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3123, 3153 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 52, 178, 3454 |
| Bse118I | RCCGGY | 3 cut(s) | 92, 741, 2760 |
| Bse1I | ACTGG | 7 cut(s) | 411, 435, 1472, 2906, 2944, 3424, 3475 |
| Bse3DI | GCAATG | 2 cut(s) | 2257, 2269 |
| BseAI | TCCGGA | 1 cut(s) | 1267 |
| BseBI | CCWGG | 9 cut(s) | 385, 549, 1055, 1361, 1452, 1590, 2721, 3798, 4012 |
| BseDI | CCNNGG | 8 cut(s) | 384, 903, 2105, 3376, 3797, 3905, 4011, 4221 |
| BseGI | GGATG | 8 cut(s) | 534, 579, 2308, 2460, 3468, 3737, 4331, 4430 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 52, 178, 3454 |
| BseMI | GCAATG | 2 cut(s) | 2257, 2269 |
| BseMII | CTCAG | 8 cut(s) | 141, 363, 648, 702, 1404, 3273, 3355, 4041 |
| BseNI | ACTGG | 7 cut(s) | 411, 435, 1472, 2906, 2944, 3424, 3475 |
| BseRI | GAGGAG | 6 cut(s) | 622, 1663, 2181, 2654, 2821, 3003 |
| BseSI | GKGCMC | 3 cut(s) | 223, 2845, 3796 |
| BseX3I | CGGCCG | 1 cut(s) | 63 |
| BseYI | CCCAGC | 1 cut(s) | 3314 |
| BsgI | GTGCAG | 3 cut(s) | 1713, 3642, 3711 |
| Bsh1285I | CGRYCG | 2 cut(s) | 66, 107 |
| BshFI | GGCC | 5 cut(s) | 65, 86, 1053, 3802, 4041 |
| BshNI | GGYRCC | 2 cut(s) | 409, 1585 |
| BsiEI | CGRYCG | 2 cut(s) | 66, 107 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2343, 2845, 3495, 3796 |
| BslFI | GGGAC | 5 cut(s) | 29, 895, 1049, 2191, 3834 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 52, 178, 3454 |
| BsmAI | GTCTC | 5 cut(s) | 368, 1926, 2653, 2922, 2930 |
| BsmBI | CGTCTC | 1 cut(s) | 2922 |
| BsmFI | GGGAC | 5 cut(s) | 29, 895, 1049, 2191, 3834 |
| BsmI | GAATGC | 2 cut(s) | 1826, 3316 |
| BsnI | GGCC | 5 cut(s) | 65, 86, 1053, 3802, 4041 |
| Bso31I | GGTCTC | 1 cut(s) | 2653 |
| Bsp119I | TTCGAA | 2 cut(s) | 1378, 3981 |
| Bsp1286I | GDGCHC | 5 cut(s) | 223, 2343, 2845, 3495, 3796 |
| Bsp13I | TCCGGA | 1 cut(s) | 1267 |
| Bsp1407I | TGTACA | 2 cut(s) | 2054, 3484 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1776 |
| Bsp19I | CCATGG | 1 cut(s) | 2105 |
| BspACI | CCGC | 6 cut(s) | 53, 325, 1163, 1780, 2326, 3706 |
| BspANI | GGCC | 5 cut(s) | 65, 86, 1053, 3802, 4041 |
| BspCNI | CTCAG | 8 cut(s) | 142, 364, 647, 703, 1403, 3272, 3354, 4042 |
| BspEI | TCCGGA | 1 cut(s) | 1267 |
| BspHI | TCATGA | 3 cut(s) | 159, 1501, 1897 |
| BspLI | GGNNCC | 5 cut(s) | 411, 901, 1587, 2207, 3958 |
| BspOI | GCTAGC | 1 cut(s) | 4124 |
| BspPI | GGATC | 4 cut(s) | 499, 559, 4040, 4153 |
| BspT104I | TTCGAA | 2 cut(s) | 1378, 3981 |
| BspT107I | GGYRCC | 2 cut(s) | 409, 1585 |
| BspTI | CTTAAG | 2 cut(s) | 2210, 3032 |
| BspTNI | GGTCTC | 1 cut(s) | 2653 |
| BsrDI | GCAATG | 2 cut(s) | 2257, 2269 |
| BsrFI | RCCGGY | 3 cut(s) | 92, 741, 2760 |
| BsrGI | TGTACA | 2 cut(s) | 2054, 3484 |
| BsrI | ACTGG | 7 cut(s) | 411, 435, 1472, 2906, 2944, 3424, 3475 |
| BssAI | RCCGGY | 3 cut(s) | 92, 741, 2760 |
| BssECI | CCNNGG | 8 cut(s) | 384, 903, 2105, 3376, 3797, 3905, 4011, 4221 |
| BssNI | GRCGYC | 2 cut(s) | 2127, 3627 |
| BssSI | CACGAG | 2 cut(s) | 2844, 4089 |
| BssT1I | CCWWGG | 3 cut(s) | 2105, 3376, 3905 |
| Bst2BI | CACGAG | 2 cut(s) | 2844, 4089 |
| Bst2UI | CCWGG | 9 cut(s) | 385, 549, 1055, 1361, 1452, 1590, 2721, 3798, 4012 |
| Bst6I | CTCTTC | 2 cut(s) | 907, 1314 |
| BstACI | GRCGYC | 2 cut(s) | 2127, 3627 |
| BstAFI | CTTAAG | 2 cut(s) | 2210, 3032 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1772, 3722 |
| BstAUI | TGTACA | 2 cut(s) | 2054, 3484 |
| BstBAI | YACGTR | 1 cut(s) | 1574 |
| BstBI | TTCGAA | 2 cut(s) | 1378, 3981 |
| BstC8I | GCNNGC | 5 cut(s) | 2353, 2796, 3776, 4122, 4424 |
| BstDSI | CCRYGG | 3 cut(s) | 903, 2105, 4221 |
| BstF5I | GGATG | 8 cut(s) | 534, 579, 2308, 2460, 3468, 3737, 4331, 4430 |
| BstMAI | GTCTC | 5 cut(s) | 368, 1926, 2653, 2922, 2930 |
| BstMCI | CGRYCG | 2 cut(s) | 66, 107 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 62, 1772, 2969, 3722, 3940, 4100, 4130 |
| BstNI | CCWGG | 9 cut(s) | 385, 549, 1055, 1361, 1452, 1590, 2721, 3798, 4012 |
| BstNSI | RCATGY | 5 cut(s) | 319, 2061, 2355, 3692, 3778 |
| BstSLI | GKGCMC | 3 cut(s) | 223, 2845, 3796 |
| BstV2I | GAAGAC | 4 cut(s) | 1254, 2000, 2912, 3247 |
| BstX2I | RGATCY | 2 cut(s) | 491, 3344 |
| BstYI | RGATCY | 2 cut(s) | 491, 3344 |
| BstZI | CGGCCG | 1 cut(s) | 63 |
| BsuI | GTATCC | 1 cut(s) | 1375 |
| BsuRI | GGCC | 5 cut(s) | 65, 86, 1053, 3802, 4041 |
| BtgI | CCRYGG | 3 cut(s) | 903, 2105, 4221 |
| BtrI | CACGTC | 1 cut(s) | 3152 |
| BtsCI | GGATG | 8 cut(s) | 534, 579, 2308, 2460, 3468, 3737, 4331, 4430 |
| BtsI | GCAGTG | 1 cut(s) | 560 |
| BtsIMutI | CAGTG | 8 cut(s) | 404, 560, 884, 1423, 1883, 2115, 2613, 3625 |
| Cac8I | GCNNGC | 5 cut(s) | 2353, 2796, 3776, 4122, 4424 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2939, 3266 |
| CciI | TCATGA | 3 cut(s) | 159, 1501, 1897 |
| Cfr10I | RCCGGY | 3 cut(s) | 92, 741, 2760 |
| Cfr13I | GGNCC | 6 cut(s) | 744, 2205, 2437, 2747, 3800, 4040 |
| CseI | GACGC | 1 cut(s) | 2116 |
| CsiI | ACCWGGT | 1 cut(s) | 1359 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 2914, 4133 |
| DriI | GACNNNNNGTC | 2 cut(s) | 693, 3551 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 2914, 4133 |
| EaeI | YGGCCR | 1 cut(s) | 63 |
| EagI | CGGCCG | 1 cut(s) | 63 |
| Eam1104I | CTCTTC | 2 cut(s) | 907, 1314 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 693, 3551 |
| EarI | CTCTTC | 2 cut(s) | 907, 1314 |
| EclXI | CGGCCG | 1 cut(s) | 63 |
| Eco130I | CCWWGG | 3 cut(s) | 2105, 3376, 3905 |
| Eco147I | AGGCCT | 1 cut(s) | 1053 |
| Eco31I | GGTCTC | 1 cut(s) | 2653 |
| Eco47I | GGWCC | 4 cut(s) | 744, 2205, 2437, 2747 |
| Eco52I | CGGCCG | 1 cut(s) | 63 |
| Eco57I | CTGAAG | 7 cut(s) | 19, 2028, 2474, 3086, 3827, 3956, 4038 |
| Eco72I | CACGTG | 1 cut(s) | 1574 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2205, 2747, 4040 |
| EcoRI | GAATTC | 1 cut(s) | 3642 |
| EcoRII | CCWGG | 9 cut(s) | 383, 547, 1053, 1359, 1450, 1588, 2719, 3796, 4010 |
| EcoT14I | CCWWGG | 3 cut(s) | 2105, 3376, 3905 |
| EcoT22I | ATGCAT | 3 cut(s) | 1826, 2308, 3780 |
| ErhI | CCWWGG | 3 cut(s) | 2105, 3376, 3905 |
| Esp3I | CGTCTC | 1 cut(s) | 2922 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 904, 936, 1055, 1087 |
| FaqI | GGGAC | 5 cut(s) | 29, 895, 1049, 2191, 3834 |
| FauNDI | CATATG | 2 cut(s) | 513, 2965 |
| FbaI | TGATCA | 3 cut(s) | 1527, 1905, 2119 |
| FokI | GGATG | 8 cut(s) | 521, 566, 2315, 2447, 3475, 3724, 4338, 4417 |
| GsaI | CCCAGC | 1 cut(s) | 3318 |
| GsuI | CTGGAG | 3 cut(s) | 2504, 2904, 2961 |
| HaeIII | GGCC | 5 cut(s) | 65, 86, 1053, 3802, 4041 |
| HgaI | GACGC | 1 cut(s) | 2116 |
| Hin1I | GRCGYC | 2 cut(s) | 2127, 3627 |
| HincII | GTYRAC | 1 cut(s) | 2756 |
| HindII | GTYRAC | 1 cut(s) | 2756 |
| HindIII | AAGCTT | 2 cut(s) | 2453, 2528 |
| HphI | GGTGA | 5 cut(s) | 130, 221, 546, 1325, 3998 |
| Hpy99I | CGWCG | 4 cut(s) | 112, 2132, 2704, 3153 |
| HpyCH4IV | ACGT | 6 cut(s) | 1489, 1573, 2953, 3151, 3627, 4417 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 62, 1772, 2969, 3722, 3940, 4100, 4130 |
| HpySE526I | ACGT | 6 cut(s) | 1489, 1573, 2953, 3151, 3627, 4417 |
| Hsp92I | GRCGYC | 2 cut(s) | 2127, 3627 |
| Kpn2I | TCCGGA | 1 cut(s) | 1267 |
| Ksp22I | TGATCA | 3 cut(s) | 1527, 1905, 2119 |
| LmnI | GCTCC | 7 cut(s) | 1124, 1198, 2485, 2942, 2983, 3123, 3931 |
| MabI | ACCWGGT | 1 cut(s) | 1359 |
| MaeII | ACGT | 6 cut(s) | 1489, 1573, 2953, 3151, 3627, 4417 |
| MaeIII | GTNAC | 9 cut(s) | 194, 227, 367, 1089, 1371, 1757, 1925, 2373, 2728 |
| MfeI | CAATTG | 2 cut(s) | 716, 2369 |
| MflI | RGATCY | 2 cut(s) | 491, 3344 |
| MhlI | GDGCHC | 5 cut(s) | 223, 2343, 2845, 3495, 3796 |
| MlyI | GAGTC | 4 cut(s) | 176, 1268, 2027, 2482 |
| MmeI | TCCRAC | 5 cut(s) | 159, 1780, 1828, 3057, 3109 |
| Mph1103I | ATGCAT | 3 cut(s) | 1826, 2308, 3780 |
| MroI | TCCGGA | 1 cut(s) | 1267 |
| MroXI | GAANNNNTTC | 2 cut(s) | 851, 2456 |
| MslI | CAYNNNNRTG | 6 cut(s) | 277, 2104, 2262, 2384, 2406, 2586 |
| MspA1I | CMGCKG | 1 cut(s) | 1163 |
| MspCI | CTTAAG | 2 cut(s) | 2210, 3032 |
| MunI | CAATTG | 2 cut(s) | 716, 2369 |
| Mva1269I | GAATGC | 2 cut(s) | 1826, 3316 |
| MvaI | CCWGG | 9 cut(s) | 385, 549, 1055, 1361, 1452, 1590, 2721, 3798, 4012 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 62, 1772, 2969, 3722, 3940, 4100, 4130 |
| NciI | CCSGG | 1 cut(s) | 503 |
| NcoI | CCATGG | 1 cut(s) | 2105 |
| NdeI | CATATG | 2 cut(s) | 513, 2965 |
| NheI | GCTAGC | 1 cut(s) | 4120 |
| NlaIV | GGNNCC | 5 cut(s) | 411, 901, 1587, 2207, 3958 |
| NmuCI | GTSAC | 4 cut(s) | 227, 367, 1757, 1925 |
| NsiI | ATGCAT | 3 cut(s) | 1826, 2308, 3780 |
| NspI | RCATGY | 5 cut(s) | 319, 2061, 2355, 3692, 3778 |
| NspV | TTCGAA | 2 cut(s) | 1378, 3981 |
| OliI | CACNNNNGTG | 1 cut(s) | 2406 |
| PaeI | GCATGC | 2 cut(s) | 2355, 3778 |
| PagI | TCATGA | 3 cut(s) | 159, 1501, 1897 |
| PceI | AGGCCT | 1 cut(s) | 1053 |
| PciI | ACATGT | 2 cut(s) | 315, 2057 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3148 |
| PctI | GAATGC | 2 cut(s) | 1826, 3316 |
| PdmI | GAANNNNTTC | 2 cut(s) | 851, 2456 |
| PflFI | GACNNNGTC | 1 cut(s) | 2751 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 178 |
| PfoI | TCCNGGA | 1 cut(s) | 1450 |
| PleI | GAGTC | 4 cut(s) | 176, 1267, 2027, 2481 |
| PmaCI | CACGTG | 1 cut(s) | 1574 |
| PmlI | CACGTG | 1 cut(s) | 1574 |
| PpsI | GAGTC | 4 cut(s) | 176, 1267, 2027, 2481 |
| Ppu21I | YACGTR | 1 cut(s) | 1574 |
| PpuMI | RGGWCCY | 2 cut(s) | 2205, 2747 |
| PscI | ACATGT | 2 cut(s) | 315, 2057 |
| PshBI | ATTAAT | 2 cut(s) | 360, 4071 |
| PsiI | TTATAA | 1 cut(s) | 3914 |
| Psp5II | RGGWCCY | 2 cut(s) | 2205, 2747 |
| Psp6I | CCWGG | 9 cut(s) | 383, 547, 1053, 1359, 1450, 1588, 2719, 3796, 4010 |
| PspCI | CACGTG | 1 cut(s) | 1574 |
| PspFI | CCCAGC | 1 cut(s) | 3314 |
| PspGI | CCWGG | 9 cut(s) | 383, 547, 1053, 1359, 1450, 1588, 2719, 3796, 4010 |
| PspN4I | GGNNCC | 5 cut(s) | 411, 901, 1587, 2207, 3958 |
| PspPI | GGNCC | 6 cut(s) | 744, 2205, 2437, 2747, 3800, 4040 |
| PspPPI | RGGWCCY | 2 cut(s) | 2205, 2747 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2939, 3266 |
| PsuI | RGATCY | 2 cut(s) | 491, 3344 |
| PsyI | GACNNNGTC | 1 cut(s) | 2751 |
| RseI | CAYNNNNRTG | 6 cut(s) | 277, 2104, 2262, 2384, 2406, 2586 |
| Sau96I | GGNCC | 6 cut(s) | 744, 2205, 2437, 2747, 3800, 4040 |
| ScaI | AGTACT | 2 cut(s) | 3428, 3920 |
| SchI | GAGTC | 4 cut(s) | 176, 1268, 2027, 2482 |
| SduI | GDGCHC | 5 cut(s) | 223, 2343, 2845, 3495, 3796 |
| SexAI | ACCWGGT | 1 cut(s) | 1359 |
| SfuI | TTCGAA | 2 cut(s) | 1378, 3981 |
| SinI | GGWCC | 4 cut(s) | 744, 2205, 2437, 2747 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 277, 2104, 2262, 2384, 2406, 2586 |
| SmlI | CTYRAG | 8 cut(s) | 1512, 1957, 2210, 2470, 3032, 3296, 3305, 4205 |
| SmoI | CTYRAG | 8 cut(s) | 1512, 1957, 2210, 2470, 3032, 3296, 3305, 4205 |
| SpeI | ACTAGT | 1 cut(s) | 2995 |
| SphI | GCATGC | 2 cut(s) | 2355, 3778 |
| SseBI | AGGCCT | 1 cut(s) | 1053 |
| SsiI | CCGC | 6 cut(s) | 53, 325, 1163, 1780, 2326, 3706 |
| SspI | AATATT | 1 cut(s) | 4441 |
| StuI | AGGCCT | 1 cut(s) | 1053 |
| StyI | CCWWGG | 3 cut(s) | 2105, 3376, 3905 |
| TaiI | ACGT | 6 cut(s) | 1492, 1576, 2956, 3154, 3630, 4420 |
| TaqI | TCGA | 6 cut(s) | 129, 1378, 1443, 2011, 3148, 3981 |
| TaqII | GACCGA | 1 cut(s) | 93 |
| TatI | WGTACW | 7 cut(s) | 524, 2054, 2077, 3426, 3484, 3570, 3918 |
| TauI | GCSGC | 3 cut(s) | 56, 327, 1783 |
| TscAI | CASTG | 8 cut(s) | 411, 567, 891, 1423, 1883, 2122, 2620, 3625 |
| TseFI | GTSAC | 4 cut(s) | 227, 367, 1757, 1925 |
| Tsp45I | GTSAC | 4 cut(s) | 227, 367, 1757, 1925 |
| TspGWI | ACGGA | 2 cut(s) | 3730, 3949 |
| TspRI | CASTG | 8 cut(s) | 411, 567, 891, 1423, 1883, 2122, 2620, 3625 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2751 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 178 |
| Vha464I | CTTAAG | 2 cut(s) | 2210, 3032 |
| VneI | GTGCAC | 2 cut(s) | 2841, 3792 |
| VpaK11BI | GGWCC | 4 cut(s) | 744, 2205, 2437, 2747 |
| VspI | ATTAAT | 2 cut(s) | 360, 4071 |
| XapI | RAATTY | 9 cut(s) | 242, 730, 864, 1028, 1649, 2312, 2573, 3642, 3825 |
| XbaI | TCTAGA | 2 cut(s) | 3235, 3829 |
| XceI | RCATGY | 5 cut(s) | 319, 2061, 2355, 3692, 3778 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3383 |
| XmaJI | CCTAGG | 1 cut(s) | 3905 |
| XmnI | GAANNNNTTC | 2 cut(s) | 851, 2456 |
| ZraI | GACGTC | 1 cut(s) | 3628 |
| ZrmI | AGTACT | 2 cut(s) | 3428, 3920 |
| Zsp2I | ATGCAT | 3 cut(s) | 1826, 2308, 3780 |