Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008435

Physical Location & Seq

Genomic Coordinates Reverse (-)

20896269 .. 20918598

Gene Structure 22330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG223100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5334 bp

ATGAAAAACGACCAGAAGTTGGACTCCCATGACTGTAACTATCTGGCATCATTGGTTGGGGCACTTTGTCACCTTCTAAAGAAATTTGACACTAATCTTGGTGCTTTGGAATCATTTATATGGAAATGTTTTCTTCCATTGATAAAGATGGCACACATGTTCAGCCGCAATATGCTTAACCAGATTACAGAATCGTTTATTAATGCTGTGACTGAGACAAACACCTGGGTAGTTGTGGAGGCAACACTGGTGCCAATTTTTCTAACATTAGTTGCCAGTTCTATTGGGATGCCTGAAAAGGAAGTATCAGATACTTTTCAGTTCATGTTGGGATCTAATGACCGGGTAAATCATATAGAAATGAGTACAAAAACCATCCTTTCGCCACCTGGATCACCTTCGCTGCCAATTTCATGCCACATCCTAACCTTAATGCTTGATGCTGTCCTTCAAAGCCAGAAAATAGCTACCTCCTCTGAATCAATAATTGCAAATGGGTGTTTTGGTGAGAATTTTGCTGGTAAATTGACTTGGGGTCTTTGTAGCTTGACTGAGCAATTGCTTTTACAAAATTTGGAACACCGGTCCTGTGCTACTGCCTTTCTTCTCCCAATCATTTTCAAAGCATTTTCTTCCTATTGCTCTTTTCAAATCTCAATAGATGGGCAGACCTTTACACTTTCAAGGAACAACTTCTTTATGAAAATTTGGAAGTGCTGTGGGACACTGTTTTCTCTTGGAACCGTGGAGAGACGAGATGCTTTTGGCGTACTCTCCTTGTACCTGTCTTTTTTTCCTTTTACAGAAGAAAGTGGAGATACCAACATGAGTGATAAAGTGGAATGTTTTGATATAAGAGCTGAAACAAAATTTTGGGACGAGATTAAAAGAGGCCTGGTTGATAAGGAGAGCTTAGTGAGGAAGCAATCGTTACACATCTTAAAGATAGCACTACGCGTAAATGGAGCAGCCCAACCCTCCGGTGTTTTAGAGGATATATCGGCTGAAAATAATTCAATGCCTCACAGCATGACAAAGAGGGAGCTGTGGGCTGATAAGGAAGCTAAATCTCTGGGTGTGGGGAAAATATGTAGCCAAGTTGAGTCTTCTCCGGACAGCCAGAACAAGTGGGAGGCATTTGTATTGCTGTATGAAATGCTTGAAGAGTATGGAACTCACCTCGTTGAAGCAGCTTGGAATTACCAGGTATCCTTGTTACTTCGAAACTCTAGCTCAGATGCTAATAATAAAACCTCTATCAGTGGAGCAGTTCATCAAAACCAGATCGAAAGTCCAGGAGAAATCTTTAACTGGTTAGCAATTTTGTGGGAACGGGGTTTTAATCATGACAATCCTCAAGTTAGGTGCTTGATCATGCAGTCATTTTTAGGGATTGATTGGAAGAATTACGGTACACATGCAAGAACGGTGCCTGGATATTTTGTTCTTGGTTCATTTATACAAGGGCTAAATGACCCTGTGCATCACAAAGAATTTGGTGTAAAAGGAATATACTCTTCAATGACAATAGAAGGTGCAGCTAACTTTCTAAGCGAATATACAAGTTATCTGAATGTGAGGAAGTGCATTATGTTTTTGAGTGACTTAGCATCTGCTGCTAAGCGGCAACCTCTTGGTAGAGTTGGATTGATGTGCCTTGCTGAATGCATTTCTTCTTCTGCTTGTCTAGTCAGAAAGAATAATAGTGAAATTGGTGCACAGTGCTTTGAAGATGGAGTTCATGACGTGATCAAAGTGGGAAAGTCTCCTCACAATGACAAAATTGTTTTGCTTGATGCCTTGAGATTTATTATTGAGAGCAGCAAACAACATTTCAATTCTAATTATCGTCTTCGAGTTTGTGAGAAAGTCCTTGACTCCGCTGCGTCAGTGGTGTGTACATGTGATCTACCTCTTGATGTACTTTTGCACTTCATTTCAACATTTCCATGGGAGTTCACTGATCACGGCGGTCCCTTAAGAGAGAAAATACGACAATGGCTTATGGGGTGTGGTAAGCGTTGTAGTGTCAACTGCTGCAGTACTGAGATGAAGCTCCTGAAGAGTCTTTATGACTTTCCAAATAGGTTTACGAGCCATTGCAATGATGATGCTTCAACCACTTTTGACGATGAAGATTTGGATGCATGGGAATTTGAAGCGAAGCGGTGGGCAAGAGTGCTCTTTATTGCATGCATGGAGGAATATCAATTGTTACCCATACTGATGTTTATTCAAAATCACGGTGGTGATGTCTGCAAACAAAACAATAAGATGGACCTATTTCCTGTGAAGTTTTTCATCCTCATCTTGAGTCTAGTTCTGGAGCTTCAGATGATGCAAGAAAGAGTTGCCAAACATGGTTCTAAGCTTAGAACCAAATCAGAGTTTTTTGTGCCAGAATCAATGAATGAATTTAGTCATGCAGATGTTTCTAATTTATACCAAAAGTTCACTGACATTTTTCTTCTCATATTGGAGGAGTTGGTCTCTTTTGCAAACTTGTCTTGTTCCATATTCTCAAATAACAATACCACTACGATGAGAGATGCAACCCTTCCTGGTTCTGTAACCGGAAAACTTGGAGGACCTAGTCAACGCCGGTTGTCATCTTCTACCACTACTGCTGTATTGCAAGCAATTATGTCCATGAAAGCTGTTGCAACTATCTCCTCATTCTGTGCACGAGTTAAAACTGATGTTTCACTTGATCTTCCTATTAATTTTTTGTGGGATTTCTTCTGGAAGACTATTTCGTCTCCAGCTTGTGATTCAGAGACTGGAGCAGAAATACGTCTTGCAGCATATGAAGCATTAGCTCCTACTCTCACAGCACTAGTGTCTGTGTGTTCTCCTCAAACTTTGGATATACTTAAGAAAAATGACAGCTCATTACTATCAGATGGCAAACCTCTGTTGGATTCTTTGGTGCTTTCTTTTCTTCAGAACATAAATAAGCTCCTTACAGTTGGAGTATTTGTACGATCTCGACGTGCAATTTTAATGAATTGGAAGTGGATTTGCCTAGAATCTCTACTGTCAATTCCTTGCTATGCTCTTAGGAATGGGCTTCTTCTAGAGGCAAATAATTTTGTCTTCTCAGGTGCTGCTCTCCGATGTATTTTTTCTGATATTCTTGAGAGCCTTGAGAATGCTGGGGAAGGTTCTGTTTTACCGATGCTTAGATCTGTCCGATTAGTTTTGGACTTATTTGCCCAAGGAAAGTCTGGTTCACTTGTCTGCTTATGTGATGGGGTGGATTCCCAGATGCTGTGGCATTTGGTTCATTCTTCTTGGATATTGCATGTCAGTTGCAACAAGCGGAAGGTTGCACCTATTGCTGCACTTTTGTCTTCCGTTCTCCATTCATCCCTATTTAGTGATGAGAGCATGCACATAATTGATGGTGCACCTGGGCCTCTGAAGTGGTTTGTTGAAAAAATTCTAGAGGAAGGCACGAAAAGTCCCCGTACAATTCGTCTTGCTGCATTACACTTAACAGGGCTGTGGCTATCATATCCTAGGATTATAAAGTACTATGTGAAGGAGCTGAAGCTGCTATCTCTACATGGTTCCGTTGCATTTGATGAGGACTTCGAAGGTGAATTAGCTGATAATCGTGATACCAGGGCTGAAGTTTCTTTGTTGGCAAAAGGCCCTGATCCTGAGCTGACCAAAGCATTTATTAATACAGAGTTGTATGCACGAGCCTCTGTTGCTGTTTTGTTTTACAAGCTAGCAGACATGGCTGTCATGGTGGGATCAACTAATGAAAATGCAGATTGCCATGCAGCTTTGGAATCTGGAAAAATGTTTTTGCTTGAGCTTCTTGATTCCGCGGTAAACGACAAGGATCTTGCAAAAGAGTTGTATAAGAAGTATAGTGCAATTCATAGAAGAAAGGTACGGGCATGGCAAATGATATGTATTTTGTCGCATTTCGTCTGTCAAGATATAGTTTCTGAAGTTGCACGTTGCTTGCACACATCCCTCTATAGGAACAACTTACCTGCAGTTCGTCAATATTTGGAAACATTTGCAATTAATATATACTTAAAGTTTCCATCACTGGTTGGGGAGCAACTAGTTCCTATATTAAGAGATTATGACATGAGGCCTCAGGCTCTCTCTTCTTACGTATTTATAGCAGCTAACGTCATCCTCCATGCATCTCAATCTGTTCAACACCGACATCTGAATGAATTACTTCCTCCTATAGTTCCACTATTAACCTCACATCACCACAGTCTACGTGGTTTCACCCAGTTGCTGGTTTACCAAGTTCTATGCAAATTGTTCCCTCCATTGGATTCTAAAGCCTCTGAAACTATGACTTTAGAGAAGAGGTGTTTTGAGGATCTCAAATCCTACCTCGCAAAGAATTCTGATTGTACGCGCTTACGACAATCAATGGAAGGATATCTTGATGCCTACAGTCCCCATAGCTCGGTCACTCCTGCGGGCGTTTTCATCAACCGGGTTGAGGACGTCGAGTTTGAATGTGTACCAAAATCCCTTATGGAGCAAGTGCTCAACTTTTTGAATGATGTGAGGGAAGACCTTCGAAATTCAATGGCAAAGGATGTTGTGACTATTAAGAATGAGAGTTTGAGATCTGATGGAGATCAAGACCACATGGTGATACTGTCTAATGCTAATGAAAGAAAATTGAGTACCCAGCTGCCTAAAGATACCTCACTAGATTTTCAGAAGAAGATTACTCTGTGTAAACACGAGAAGCAAGACATAAACGTTAATTCTCACCAAGAAACTTACAAACAACTTCAGGAAATAGAAAAGGACGATAAGCTTCTTGCTCAGGTGCTGCAGTTTAGAACTCTAGGAATGGAAAGAGAGAGATCAAGCAGACAACATCTTATCCTTGTAGCATCTCTGCTTGATCGGATACCTAACCTAGCTGGCCTTGCACGGACTTGTGAGGTATTTAAAGCATCAAGTTTGGCCATTGCAGATACGAACGTGTTACATGACAAACAGTTCCAACTCATCAGTGTGACTGCAGAGAAGTGGGTTCCTATCATCGAAGTCCCAGTGAATAGTTTGAAGGTGTTCCTTCAGAAAAAGAAACGAGAAGGCTTCTCAATTTTAGGACTAGAGCAGACTGCAAATAGTATACCTCTTGATCAATATATATTTCCAAAAGACACAGTACTGGTTCTTGGGCGAGAGAAGGAAGGTATACCAGTTGATATAATACATATTCTGGATGCTTGCCTTGAGATTCCACAGTTGGGAGTTGTTAGATCTCTCAATGTTCATGTCAGTGGTGCCATTGCTCTGTGGGAGTATACTAGACAGCAGAGATCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008649 GO:0008757 GO:0009451 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016072 GO:0016423 GO:0016435 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030488 GO:0031167 GO:0031323 GO:0031326 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070039 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:0140102 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

1777

Amino Acids

199.74

Weight (kDa)

6.24

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	1626 - 1768	4.7e-25	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17610 AT4G17610 AT4G17610
fragaria_vesca	FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370 FvH4_5g20370
malus_domestica	MD04G1055600.v1.1
prunus_persica	Prupe.5G055400_v2.0.a1 Prupe.5G055400_v2.0.a1
pyrus_communis	pycom04g04890
rosa_chinensis	RchiOBHm_Chr7g0205631
rosa_laevigata	RLG00000003369
rosa_multiflora	Rmu_ssc0000482.1_g000025
rosa_roxburghii	Rroxscaffold_3G00252130
rosa_rugosa	Rorug07G0092300
rosa_samantha	Rh7AG223100 Rh7AG230100 Rh7BG218100 Rh7CG236300 Rh7DG230000
rosa_wichuraiana	Rw7G019240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3530
AasI	GACNNNNNNGTC	2 cut(s)	2755, 3749
AatII	GACGTC	1 cut(s)	4491
Acc36I	ACCTGC	1 cut(s)	4018
AccB1I	GGYRCC	3 cut(s)	250, 1429, 5288
AccB7I	CCANNNNNTGG	2 cut(s)	19, 4270
AccI	GTMKAC	4 cut(s)	4249, 5134, 5200, 5309
AccII	CGCG	3 cut(s)	957, 3839, 4396
AccIII	TCCGGA	1 cut(s)	1111
AciI	CCGC	9 cut(s)	166, 1624, 1881, 1971, 2167, 3322, 3837, 3839, 4460
AclI	AACGTT	1 cut(s)	4752
AclWI	GGATC	7 cut(s)	340, 400, 3656, 3769, 3861, 4365, 5319
AcoI	YGGCCR	1 cut(s)	4962
AcuI	CTGAAG	9 cut(s)	2081, 2315, 2927, 3443, 3572, 3654, 3984, 4769, 5060
AcyI	GRCGYC	1 cut(s)	4488
AdeI	CACNNNGTG	1 cut(s)	4639
AfiI	CCNNNNNNNGG	7 cut(s)	19, 3996, 4270, 4306, 4447, 4483, 5252
AflII	CTTAAG	2 cut(s)	1978, 2873
AflIII	ACRYGT	4 cut(s)	156, 955, 1901, 4980
AgeI	ACCGGT	1 cut(s)	582
AhdI	GACNNNNNGTC	1 cut(s)	534
AhlI	ACTAGT	2 cut(s)	2836, 4084
AjiI	CACGTC	2 cut(s)	1747, 2993
AjnI	CCWGG	9 cut(s)	224, 388, 894, 1203, 1294, 1432, 2560, 3412, 3626
AleI	CACNNNNGTG	1 cut(s)	2247
AloI	GAACNNNNNNTCC	2 cut(s)	1428, 1460
Alw21I	GWGCWC	5 cut(s)	1720, 2184, 2686, 3412, 4533
Alw26I	GTCTC	6 cut(s)	209, 745, 1770, 2494, 2763, 2771
Alw44I	GTGCAC	3 cut(s)	1716, 2682, 3408
AlwI	GGATC	7 cut(s)	340, 400, 3656, 3769, 3861, 4365, 5319
AlwNI	CAGNNNCTG	5 cut(s)	2780, 3107, 3271, 4270, 4825
Aor13HI	TCCGGA	1 cut(s)	1111
AoxI	GGCC	6 cut(s)	892, 3416, 3655, 4115, 4921, 4962
ApaLI	GTGCAC	3 cut(s)	1716, 2682, 3408
ArsI	GACNNNNNNTTYG	2 cut(s)	4478, 4510
AseI	ATTAAT	4 cut(s)	201, 2721, 3687, 4044
AsiGI	ACCGGT	1 cut(s)	582
Asp700I	GAANNNNTTC	6 cut(s)	692, 2297, 3441, 4206, 4560, 5069
AspA2I	CCTAGG	1 cut(s)	3521
AspLEI	GCGC	1 cut(s)	4398
AspS9I	GGNCC	6 cut(s)	585, 1973, 2278, 2588, 3416, 3656
AsuC2I	CCSGG	2 cut(s)	344, 4478
AsuII	TTCGAA	3 cut(s)	1222, 3597, 4564
AsuNHI	GCTAGC	1 cut(s)	3736
AvaII	GGWCC	4 cut(s)	585, 1973, 2278, 2588
AvrII	CCTAGG	1 cut(s)	3521
AxyI	CCTNAGG	1 cut(s)	4119
BaeGI	GKGCMC	4 cut(s)	64, 1720, 2686, 3412
BaeI	ACNNNNGTAYC	2 cut(s)	4965, 4998
BalI	TGGCCA	1 cut(s)	4964
BanI	GGYRCC	3 cut(s)	250, 1429, 5288
BauI	CACGAG	3 cut(s)	2685, 3705, 4733
BbsI	GAAGAC	6 cut(s)	1098, 1844, 2753, 3088, 3345, 4563
Bbv12I	GWGCWC	5 cut(s)	1720, 2184, 2686, 3412, 4533
BceAI	ACGGC	1 cut(s)	1984
BciT130I	CCWGG	9 cut(s)	226, 390, 896, 1205, 1296, 1434, 2562, 3414, 3628
BciVI	GTATCC	2 cut(s)	1219, 4899
BclI	TGATCA	4 cut(s)	1371, 1749, 1963, 5143
BcnI	CCSGG	2 cut(s)	344, 4478
BcoDI	GTCTC	6 cut(s)	209, 745, 1770, 2494, 2763, 2771
BcuI	ACTAGT	2 cut(s)	2836, 4084
BfmI	CTRYAG	7 cut(s)	2038, 3994, 4011, 4215, 4432, 4826, 5019
BfrI	CTTAAG	2 cut(s)	1978, 2873
BfuAI	ACCTGC	1 cut(s)	4018
BfuI	GTATCC	2 cut(s)	1219, 4899
BglII	AGATCT	3 cut(s)	3185, 4613, 5264
BlnI	CCTAGG	1 cut(s)	3521
BlpI	GCTNAGC	1 cut(s)	1620
BmcAI	AGTACT	3 cut(s)	2044, 3536, 5172
Bme18I	GGWCC	4 cut(s)	585, 1973, 2278, 2588
BmeRI	GACNNNNNGTC	1 cut(s)	534
BmgBI	CACGTC	2 cut(s)	1747, 2993
BmgT120I	GGNCC	6 cut(s)	585, 1973, 2278, 2588, 3416, 3656
BmiI	GGNNCC	7 cut(s)	252, 742, 1431, 1975, 3574, 5034, 5290
BmrI	ACTGGG	3 cut(s)	4258, 5045, 5323
BmtI	GCTAGC	1 cut(s)	3740
BmuI	ACTGGG	3 cut(s)	4258, 5045, 5323
BpiI	GAAGAC	6 cut(s)	1098, 1844, 2753, 3088, 3345, 4563
BplI	GAGNNNNNCTC	2 cut(s)	2474, 2506
BpmI	CTGGAG	3 cut(s)	2345, 2745, 2802
Bpu10I	CCTNAGC	2 cut(s)	3666, 4818
Bpu1102I	GCTNAGC	1 cut(s)	1620
Bpu14I	TTCGAA	3 cut(s)	1222, 3597, 4564
BpuEI	CTTGAG	7 cut(s)	1341, 1822, 2332, 3158, 3167, 3842, 5258
BpuMI	CCSGG	2 cut(s)	344, 4478
BsaAI	YACGTR	2 cut(s)	4138, 4253
BsaBI	GATNNNNATC	1 cut(s)	4623
BsaHI	GRCGYC	1 cut(s)	4488
BsaI	GGTCTC	1 cut(s)	2494
BsaJI	CCNNGG	8 cut(s)	225, 744, 1949, 3217, 3413, 3521, 3627, 3837
BsaWI	WCCGGW	4 cut(s)	582, 980, 1111, 2573
BsaXI	ACNNNNNCTCC	2 cut(s)	2964, 2994
Bsc4I	CCNNNNNNNGG	7 cut(s)	19, 3996, 4270, 4306, 4447, 4483, 5252
Bse118I	RCCGGY	2 cut(s)	582, 2601
Bse21I	CCTNAGG	1 cut(s)	4119
Bse3DI	GCAATG	4 cut(s)	2098, 2110, 4965, 5292
Bse8I	GATNNNNATC	1 cut(s)	4623
BseAI	TCCGGA	1 cut(s)	1111
BseBI	CCWGG	9 cut(s)	226, 390, 896, 1205, 1296, 1434, 2562, 3414, 3628
BseDI	CCNNGG	8 cut(s)	225, 744, 1949, 3217, 3413, 3521, 3627, 3837
BseJI	GATNNNNATC	1 cut(s)	4623
BseLI	CCNNNNNNNGG	7 cut(s)	19, 3996, 4270, 4306, 4447, 4483, 5252
BseMI	GCAATG	4 cut(s)	2098, 2110, 4965, 5292
BseMII	CTCAG	8 cut(s)	204, 543, 1248, 2037, 3114, 3657, 4133, 4832
BseRI	GAGGAG	5 cut(s)	463, 1758, 2495, 2662, 2844
BseSI	GKGCMC	4 cut(s)	64, 1720, 2686, 3412
BseYI	CCCAGC	2 cut(s)	3155, 4677
BsgI	GTGCAG	2 cut(s)	1557, 3327
Bsh1236I	CGCG	3 cut(s)	957, 3839, 4396
BshFI	GGCC	6 cut(s)	894, 3418, 3657, 4117, 4923, 4964
BshNI	GGYRCC	3 cut(s)	250, 1429, 5288
BshTI	ACCGGT	1 cut(s)	582
BsiHKAI	GWGCWC	5 cut(s)	1720, 2184, 2686, 3412, 4533
BsiSI	CCGG	7 cut(s)	343, 583, 981, 1112, 2574, 2602, 4477
BslFI	GGGAC	6 cut(s)	736, 890, 1959, 3450, 4422, 5033
BslI	CCNNNNNNNGG	7 cut(s)	19, 3996, 4270, 4306, 4447, 4483, 5252
BsmAI	GTCTC	6 cut(s)	209, 745, 1770, 2494, 2763, 2771
BsmBI	CGTCTC	2 cut(s)	745, 2763
BsmFI	GGGAC	6 cut(s)	736, 890, 1959, 3450, 4422, 5033
BsmI	GAATGC	2 cut(s)	1670, 3157
BsnI	GGCC	6 cut(s)	894, 3418, 3657, 4117, 4923, 4964
Bso31I	GGTCTC	1 cut(s)	2494
Bsp119I	TTCGAA	3 cut(s)	1222, 3597, 4564
Bsp1286I	GDGCHC	6 cut(s)	64, 1720, 2184, 2686, 3412, 4533
Bsp13I	TCCGGA	1 cut(s)	1111
Bsp1407I	TGTACA	1 cut(s)	1898
Bsp1720I	GCTNAGC	1 cut(s)	1620
Bsp19I	CCATGG	1 cut(s)	1949
BspACI	CCGC	9 cut(s)	166, 1624, 1881, 1971, 2167, 3322, 3837, 3839, 4460
BspANI	GGCC	6 cut(s)	894, 3418, 3657, 4117, 4923, 4964
BspCNI	CTCAG	8 cut(s)	205, 544, 1247, 2038, 3113, 3658, 4132, 4831
BspEI	TCCGGA	1 cut(s)	1111
BspFNI	CGCG	3 cut(s)	957, 3839, 4396
BspHI	TCATGA	2 cut(s)	1345, 1741
BspLI	GGNNCC	7 cut(s)	252, 742, 1431, 1975, 3574, 5034, 5290
BspMAI	CTGCAG	4 cut(s)	2042, 4015, 4830, 5023
BspMI	ACCTGC	1 cut(s)	4018
BspOI	GCTAGC	1 cut(s)	3740
BspPI	GGATC	7 cut(s)	340, 400, 3656, 3769, 3861, 4365, 5319
BspT104I	TTCGAA	3 cut(s)	1222, 3597, 4564
BspT107I	GGYRCC	3 cut(s)	250, 1429, 5288
BspTI	CTTAAG	2 cut(s)	1978, 2873
BspTNI	GGTCTC	1 cut(s)	2494
BsrDI	GCAATG	4 cut(s)	2098, 2110, 4965, 5292
BsrFI	RCCGGY	2 cut(s)	582, 2601
BsrGI	TGTACA	1 cut(s)	1898
BssAI	RCCGGY	2 cut(s)	582, 2601
BssECI	CCNNGG	8 cut(s)	225, 744, 1949, 3217, 3413, 3521, 3627, 3837
BssNAI	GTATAC	3 cut(s)	5135, 5201, 5310
BssNI	GRCGYC	1 cut(s)	4488
BssSI	CACGAG	3 cut(s)	2685, 3705, 4733
BssT1I	CCWWGG	3 cut(s)	1949, 3217, 3521
Bst1107I	GTATAC	3 cut(s)	5135, 5201, 5310
Bst2BI	CACGAG	3 cut(s)	2685, 3705, 4733
Bst2UI	CCWGG	9 cut(s)	226, 390, 896, 1205, 1296, 1434, 2562, 3414, 3628
Bst6I	CTCTTC	5 cut(s)	1158, 1522, 2057, 4135, 4337
BstACI	GRCGYC	1 cut(s)	4488
BstAFI	CTTAAG	2 cut(s)	1978, 2873
BstAPI	GCANNNNNTGC	2 cut(s)	1616, 3338
BstAUI	TGTACA	1 cut(s)	1898
BstBAI	YACGTR	2 cut(s)	4138, 4253
BstBI	TTCGAA	3 cut(s)	1222, 3597, 4564
BstC8I	GCNNGC	8 cut(s)	2194, 2637, 3392, 3738, 3980, 4462, 4921, 5233
BstDSI	CCRYGG	3 cut(s)	744, 1949, 3837
BstFNI	CGCG	3 cut(s)	957, 3839, 4396
BstHHI	GCGC	1 cut(s)	4398
BstMAI	GTCTC	6 cut(s)	209, 745, 1770, 2494, 2763, 2771
BstMWI	GCNNNNNNNGC	7 cut(s)	1616, 2810, 3338, 3556, 3716, 3746, 4925
BstNI	CCWGG	9 cut(s)	226, 390, 896, 1205, 1296, 1434, 2562, 3414, 3628
BstNSI	RCATGY	6 cut(s)	160, 1421, 1905, 2196, 3308, 3394
BstSFI	CTRYAG	7 cut(s)	2038, 3994, 4011, 4215, 4432, 4826, 5019
BstSLI	GKGCMC	4 cut(s)	64, 1720, 2686, 3412
BstSNI	TACGTA	1 cut(s)	4138
BstUI	CGCG	3 cut(s)	957, 3839, 4396
BstV2I	GAAGAC	6 cut(s)	1098, 1844, 2753, 3088, 3345, 4563
BstX2I	RGATCY	7 cut(s)	332, 3185, 3853, 4357, 4613, 5264, 5324
BstYI	RGATCY	7 cut(s)	332, 3185, 3853, 4357, 4613, 5264, 5324
BstZ17I	GTATAC	3 cut(s)	5135, 5201, 5310
Bsu36I	CCTNAGG	1 cut(s)	4119
BsuI	GTATCC	2 cut(s)	1219, 4899
BsuRI	GGCC	6 cut(s)	894, 3418, 3657, 4117, 4923, 4964
BtgI	CCRYGG	3 cut(s)	744, 1949, 3837
BtrI	CACGTC	2 cut(s)	1747, 2993
BveI	ACCTGC	1 cut(s)	4018
Cac8I	GCNNGC	8 cut(s)	2194, 2637, 3392, 3738, 3980, 4462, 4921, 5233
CaiI	CAGNNNCTG	5 cut(s)	2780, 3107, 3271, 4270, 4825
CciI	TCATGA	2 cut(s)	1345, 1741
CfoI	GCGC	1 cut(s)	4398
Cfr10I	RCCGGY	2 cut(s)	582, 2601
Cfr13I	GGNCC	6 cut(s)	585, 1973, 2278, 2588, 3416, 3656
Cfr42I	CCGCGG	1 cut(s)	3840
CseI	GACGC	1 cut(s)	1875
CsiI	ACCWGGT	1 cut(s)	1203
CspAI	ACCGGT	1 cut(s)	582
DraI	TTTAAA	1 cut(s)	4948
DraIII	CACNNNGTG	1 cut(s)	4639
DrdI	GACNNNNNNGTC	2 cut(s)	2755, 3749
DriI	GACNNNNNGTC	1 cut(s)	534
DseDI	GACNNNNNNGTC	2 cut(s)	2755, 3749
EaeI	YGGCCR	1 cut(s)	4962
Eam1104I	CTCTTC	5 cut(s)	1158, 1522, 2057, 4135, 4337
Eam1105I	GACNNNNNGTC	1 cut(s)	534
EarI	CTCTTC	5 cut(s)	1158, 1522, 2057, 4135, 4337
Eco105I	TACGTA	1 cut(s)	4138
Eco130I	CCWWGG	3 cut(s)	1949, 3217, 3521
Eco147I	AGGCCT	2 cut(s)	894, 4117
Eco31I	GGTCTC	1 cut(s)	2494
Eco32I	GATATC	1 cut(s)	4421
Eco47I	GGWCC	4 cut(s)	585, 1973, 2278, 2588
Eco57I	CTGAAG	9 cut(s)	2081, 2315, 2927, 3443, 3572, 3654, 3984, 4769, 5060
Eco81I	CCTNAGG	1 cut(s)	4119
EcoO109I	RGGNCCY	2 cut(s)	2588, 3656
EcoRI	GAATTC	1 cut(s)	4381
EcoRII	CCWGG	9 cut(s)	224, 388, 894, 1203, 1294, 1432, 2560, 3412, 3626
EcoRV	GATATC	1 cut(s)	4421
EcoT14I	CCWWGG	3 cut(s)	1949, 3217, 3521
EcoT22I	ATGCAT	4 cut(s)	1670, 2149, 2198, 4171
ErhI	CCWWGG	3 cut(s)	1949, 3217, 3521
Esp3I	CGTCTC	2 cut(s)	745, 2763
FalI	AAGNNNNNCTT	4 cut(s)	896, 928, 4407, 4439
FaqI	GGGAC	6 cut(s)	736, 890, 1959, 3450, 4422, 5033
FauI	CCCGC	1 cut(s)	4453
FauNDI	CATATG	1 cut(s)	2806
FbaI	TGATCA	4 cut(s)	1371, 1749, 1963, 5143
FblI	GTMKAC	4 cut(s)	4249, 5134, 5200, 5309
GlaI	GCGC	1 cut(s)	4397
GsaI	CCCAGC	2 cut(s)	3159, 4681
GsuI	CTGGAG	3 cut(s)	2345, 2745, 2802
HaeIII	GGCC	6 cut(s)	894, 3418, 3657, 4117, 4923, 4964
HapII	CCGG	7 cut(s)	343, 583, 981, 1112, 2574, 2602, 4477
HgaI	GACGC	1 cut(s)	1875
HhaI	GCGC	1 cut(s)	4398
Hin1I	GRCGYC	1 cut(s)	4488
Hin6I	GCGC	1 cut(s)	4396
HinP1I	GCGC	1 cut(s)	4396
HincII	GTYRAC	2 cut(s)	2032, 2597
HindII	GTYRAC	2 cut(s)	2032, 2597
HindIII	AAGCTT	2 cut(s)	2369, 4808
HpaII	CCGG	7 cut(s)	343, 583, 981, 1112, 2574, 2602, 4477
Hpy99I	CGWCG	2 cut(s)	2994, 4493
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1616, 2810, 3338, 3556, 3716, 3746, 4925
Hsp92I	GRCGYC	1 cut(s)	4488
HspAI	GCGC	1 cut(s)	4396
Kpn2I	TCCGGA	1 cut(s)	1111
Ksp22I	TGATCA	4 cut(s)	1371, 1749, 1963, 5143
KspI	CCGCGG	1 cut(s)	3840
MabI	ACCWGGT	1 cut(s)	1203
MfeI	CAATTG	2 cut(s)	557, 2210
MflI	RGATCY	7 cut(s)	332, 3185, 3853, 4357, 4613, 5264, 5324
MhlI	GDGCHC	6 cut(s)	64, 1720, 2184, 2686, 3412, 4533
MlsI	TGGCCA	1 cut(s)	4964
MluI	ACGCGT	1 cut(s)	955
MluNI	TGGCCA	1 cut(s)	4964
MlyI	GAGTC	5 cut(s)	17, 1112, 1871, 2074, 2323
MmeI	TCCRAC	4 cut(s)	1624, 2898, 2950, 5026
Mox20I	TGGCCA	1 cut(s)	4964
Mph1103I	ATGCAT	4 cut(s)	1670, 2149, 2198, 4171
MroI	TCCGGA	1 cut(s)	1111
MroXI	GAANNNNTTC	6 cut(s)	692, 2297, 3441, 4206, 4560, 5069
MscI	TGGCCA	1 cut(s)	4964
Msp20I	TGGCCA	1 cut(s)	4964
MspA1I	CMGCKG	3 cut(s)	1883, 3839, 4681
MspCI	CTTAAG	2 cut(s)	1978, 2873
MspI	CCGG	7 cut(s)	343, 583, 981, 1112, 2574, 2602, 4477
MunI	CAATTG	2 cut(s)	557, 2210
Mva1269I	GAATGC	2 cut(s)	1670, 3157
MvaI	CCWGG	9 cut(s)	226, 390, 896, 1205, 1296, 1434, 2562, 3414, 3628
MvnI	CGCG	3 cut(s)	957, 3839, 4396
MwoI	GCNNNNNNNGC	7 cut(s)	1616, 2810, 3338, 3556, 3716, 3746, 4925
NciI	CCSGG	2 cut(s)	344, 4478
NcoI	CCATGG	1 cut(s)	1949
NdeI	CATATG	1 cut(s)	2806
NheI	GCTAGC	1 cut(s)	3736
NlaIV	GGNNCC	7 cut(s)	252, 742, 1431, 1975, 3574, 5034, 5290
NmuCI	GTSAC	6 cut(s)	68, 208, 1601, 4450, 4588, 5014
NsiI	ATGCAT	4 cut(s)	1670, 2149, 2198, 4171
NspI	RCATGY	6 cut(s)	160, 1421, 1905, 2196, 3308, 3394
NspV	TTCGAA	3 cut(s)	1222, 3597, 4564
OliI	CACNNNNGTG	1 cut(s)	2247
PaeI	GCATGC	2 cut(s)	2196, 3394
PagI	TCATGA	2 cut(s)	1345, 1741
PceI	AGGCCT	2 cut(s)	894, 4117
PciI	ACATGT	2 cut(s)	156, 1901
PcsI	WCGNNNNNNNCGW	1 cut(s)	2989
PctI	GAATGC	2 cut(s)	1670, 3157
PdmI	GAANNNNTTC	6 cut(s)	692, 2297, 3441, 4206, 4560, 5069
PflFI	GACNNNGTC	1 cut(s)	2592
PflMI	CCANNNNNTGG	2 cut(s)	19, 4270
PfoI	TCCNGGA	1 cut(s)	1294
PinAI	ACCGGT	1 cut(s)	582
PleI	GAGTC	5 cut(s)	17, 1111, 1871, 2073, 2322
PpsI	GAGTC	5 cut(s)	17, 1111, 1871, 2073, 2322
Ppu21I	YACGTR	2 cut(s)	4138, 4253
PpuMI	RGGWCCY	1 cut(s)	2588
PscI	ACATGT	2 cut(s)	156, 1901
PshBI	ATTAAT	4 cut(s)	201, 2721, 3687, 4044
PsiI	TTATAA	1 cut(s)	3530
Psp1406I	AACGTT	1 cut(s)	4752
Psp5II	RGGWCCY	1 cut(s)	2588
Psp6I	CCWGG	9 cut(s)	224, 388, 894, 1203, 1294, 1432, 2560, 3412, 3626
PspFI	CCCAGC	2 cut(s)	3155, 4677
PspGI	CCWGG	9 cut(s)	224, 388, 894, 1203, 1294, 1432, 2560, 3412, 3626
PspN4I	GGNNCC	7 cut(s)	252, 742, 1431, 1975, 3574, 5034, 5290
PspPI	GGNCC	6 cut(s)	585, 1973, 2278, 2588, 3416, 3656
PspPPI	RGGWCCY	1 cut(s)	2588
PstI	CTGCAG	4 cut(s)	2042, 4015, 4830, 5023
PstNI	CAGNNNCTG	5 cut(s)	2780, 3107, 3271, 4270, 4825
PsuI	RGATCY	7 cut(s)	332, 3185, 3853, 4357, 4613, 5264, 5324
PsyI	GACNNNGTC	1 cut(s)	2592
PvuII	CAGCTG	1 cut(s)	4681
SacII	CCGCGG	1 cut(s)	3840
Sau96I	GGNCC	6 cut(s)	585, 1973, 2278, 2588, 3416, 3656
ScaI	AGTACT	3 cut(s)	2044, 3536, 5172
SchI	GAGTC	5 cut(s)	17, 1112, 1871, 2074, 2323
SduI	GDGCHC	6 cut(s)	64, 1720, 2184, 2686, 3412, 4533
SexAI	ACCWGGT	1 cut(s)	1203
SfcI	CTRYAG	7 cut(s)	2038, 3994, 4011, 4215, 4432, 4826, 5019
Sfr303I	CCGCGG	1 cut(s)	3840
SfuI	TTCGAA	3 cut(s)	1222, 3597, 4564
SgrBI	CCGCGG	1 cut(s)	3840
SinI	GGWCC	4 cut(s)	585, 1973, 2278, 2588
SmlI	CTYRAG	9 cut(s)	1356, 1801, 1978, 2311, 2873, 3137, 3146, 3821, 5237
SmoI	CTYRAG	9 cut(s)	1356, 1801, 1978, 2311, 2873, 3137, 3146, 3821, 5237
SnaBI	TACGTA	1 cut(s)	4138
SpeI	ACTAGT	2 cut(s)	2836, 4084
SphI	GCATGC	2 cut(s)	2196, 3394
SseBI	AGGCCT	2 cut(s)	894, 4117
SsiI	CCGC	9 cut(s)	166, 1624, 1881, 1971, 2167, 3322, 3837, 3839, 4460
SspI	AATATT	1 cut(s)	4025
StuI	AGGCCT	2 cut(s)	894, 4117
StyI	CCWWGG	3 cut(s)	1949, 3217, 3521
TaqI	TCGA	8 cut(s)	1222, 1287, 1855, 2989, 3597, 4491, 4564, 5043
TaqII	GACCGA	1 cut(s)	4438
TatI	WGTACW	6 cut(s)	365, 1898, 1921, 2042, 3534, 5170
TauI	GCSGC	2 cut(s)	168, 1627
TseFI	GTSAC	6 cut(s)	68, 208, 1601, 4450, 4588, 5014
Tsp45I	GTSAC	6 cut(s)	68, 208, 1601, 4450, 4588, 5014
TspGWI	ACGGA	3 cut(s)	3346, 3565, 4945
Tth111I	GACNNNGTC	1 cut(s)	2592
Van91I	CCANNNNNTGG	2 cut(s)	19, 4270
Vha464I	CTTAAG	2 cut(s)	1978, 2873
VneI	GTGCAC	3 cut(s)	1716, 2682, 3408
VpaK11BI	GGWCC	4 cut(s)	585, 1973, 2278, 2588
VspI	ATTAAT	4 cut(s)	201, 2721, 3687, 4044
XbaI	TCTAGA	2 cut(s)	3076, 3445
XceI	RCATGY	6 cut(s)	160, 1421, 1905, 2196, 3308, 3394
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3224, 4250
XmaJI	CCTAGG	1 cut(s)	3521
XmiI	GTMKAC	4 cut(s)	4249, 5134, 5200, 5309
XmnI	GAANNNNTTC	6 cut(s)	692, 2297, 3441, 4206, 4560, 5069
ZraI	GACGTC	1 cut(s)	4489
ZrmI	AGTACT	3 cut(s)	2044, 3536, 5172
Zsp2I	ATGCAT	4 cut(s)	1670, 2149, 2198, 4171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.