FvH4_5g21760

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009435
Physical Location & Seq
Reverse (-)
13149980 .. 13152163
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21760.t1

Sequence Viewer

Length: 570 bp
ATGGACCACGCCATTCCCTGCAACCCCTGCATTCCTCTCTACCGGAAACCCACGCTCCATCGCCACGTCACCTTGCCGAGCAGCACCTCACACCACTCCAATACAACGAAATGGCGCCGTTATACGACGACGTCGGAGCTCCAAATGCCGGTGGAAATAAACGACCGGAGGAGTAGCGACTCAGCTTCAGTTCCGACGCACAAGGTGACCGTCCACGACCGACAACGCGGCGTCGTCCACGAGTTCTTCGTCCCTGAGGATCAGTACATATTGCACACTGCTGAGGCGCAGGACATCAGTCTTCCATTCGCGTGCCGGCACGGTTGTTGTACTAGTTGTGCTGTACGTGTGAAGTCTGGAAAACTTAACCAGCCTCAGGCACTAGGGATCTCTGCCGAATTGAAATCACAGGGCTATGCACTTCTTTGTGTGGGATTTCCATCATCAGATCTTGAAGTGGAAACACAAGATGAGGATGAGGTATACTGGCTTCAATTCGGGAGATATTTTGCACGGGGTCCTATTGAAAGAGATGATTATGCATTGGAGTTGGCACTGGGTGACGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

190

Amino Acids

21.37

Weight (kDa)

5.91

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 79 - 146 6.5e-14 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 114
AccI GTMKAC 1 cut(s) 483
AccII CGCG 2 cut(s) 228, 311
AciI CCGC 1 cut(s) 228
AclWI GGATC 2 cut(s) 267, 395
AcuI CTGAAG 1 cut(s) 171
AcyI GRCGYC 3 cut(s) 115, 131, 231
AdeI CACNNNGTG 2 cut(s) 205, 560
AfaI GTAC 3 cut(s) 266, 331, 345
AfiI CCNNNNNNNGG 2 cut(s) 148, 376
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 4 cut(s) 403, 455, 494, 527
AhlI ACTAGT 1 cut(s) 332
AjiI CACGTC 1 cut(s) 67
AluBI AGCT 2 cut(s) 139, 185
AluI AGCT 2 cut(s) 139, 185
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 2 cut(s) 267, 395
ApeKI GCWGC 1 cut(s) 81
AspLEI GCGC 2 cut(s) 117, 289
AspS9I GGNCC 2 cut(s) 4, 518
AsuHPI GGTGA 2 cut(s) 61, 217
AvaII GGWCC 2 cut(s) 4, 518
AxyI CCTNAGG 2 cut(s) 255, 375
BanI GGYRCC 1 cut(s) 114
BanII GRGCYC 1 cut(s) 141
BarI GAAGNNNNNNTAC 2 cut(s) 474, 506
BauI CACGAG 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 93
BccI CCATC 2 cut(s) 66, 448
BceAI ACGGC 1 cut(s) 102
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 2 cut(s) 333, 383
BfoI RGCGCY 1 cut(s) 118
BglII AGATCT 1 cut(s) 448
BisI GCNGC 2 cut(s) 82, 229
BlsI GCNGC 2 cut(s) 83, 230
Bme18I GGWCC 2 cut(s) 4, 518
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 4, 518
BmiI GGNNCC 2 cut(s) 116, 519
BmrI ACTGGG 1 cut(s) 566
BmuI ACTGGG 1 cut(s) 566
BoxI GACNNNNGTC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 347
BsaBI GATNNNNATC 1 cut(s) 439
BsaHI GRCGYC 3 cut(s) 115, 131, 231
BsaWI WCCGGW 2 cut(s) 42, 165
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 376
Bse118I RCCGGY 2 cut(s) 148, 315
Bse1I ACTGG 2 cut(s) 491, 561
Bse21I CCTNAGG 2 cut(s) 255, 375
Bse8I GATNNNNATC 1 cut(s) 439
BseGI GGATG 1 cut(s) 481
BseJI GATNNNNATC 1 cut(s) 439
BseLI CCNNNNNNNGG 2 cut(s) 148, 376
BseMII CTCAG 4 cut(s) 195, 246, 273, 389
BseNI ACTGG 2 cut(s) 491, 561
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 93
Bsh1236I CGCG 2 cut(s) 228, 311
Bsh1285I CGRYCG 2 cut(s) 166, 220
BshNI GGYRCC 1 cut(s) 114
BsiEI CGRYCG 2 cut(s) 166, 220
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 4 cut(s) 43, 149, 166, 316
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 148, 376
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 259, 387, 448
BspACI CCGC 1 cut(s) 228
BspCNI CTCAG 4 cut(s) 194, 247, 274, 388
BspFNI CGCG 2 cut(s) 228, 311
BspLI GGNNCC 2 cut(s) 116, 519
BspPI GGATC 2 cut(s) 267, 395
BspT107I GGYRCC 1 cut(s) 114
BsrFI RCCGGY 2 cut(s) 148, 315
BsrI ACTGG 2 cut(s) 491, 561
BssAI RCCGGY 2 cut(s) 148, 315
BssMI GATC 3 cut(s) 259, 387, 448
BssNAI GTATAC 1 cut(s) 484
BssNI GRCGYC 3 cut(s) 115, 131, 231
BssSI CACGAG 1 cut(s) 239
Bst1107I GTATAC 1 cut(s) 484
Bst2BI CACGAG 1 cut(s) 239
Bst4CI ACNGT 2 cut(s) 211, 323
BstACI GRCGYC 3 cut(s) 115, 131, 231
BstAPI GCANNNNNTGC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 313, 317
BstDEI CTNAG 4 cut(s) 181, 255, 282, 375
BstEII GGTNACC 1 cut(s) 205
BstF5I GGATG 1 cut(s) 481
BstFNI CGCG 2 cut(s) 228, 311
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 117, 289
BstKTI GATC 3 cut(s) 262, 390, 451
BstMBI GATC 3 cut(s) 259, 387, 448
BstMCI CGRYCG 2 cut(s) 166, 220
BstMWI GCNNNNNNNGC 2 cut(s) 27, 145
BstPAI GACNNNNGTC 1 cut(s) 297
BstPI GGTNACC 1 cut(s) 205
BstUI CGCG 2 cut(s) 228, 311
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 2 cut(s) 387, 448
BstYI RGATCY 2 cut(s) 387, 448
BstZ17I GTATAC 1 cut(s) 484
Bsu36I CCTNAGG 2 cut(s) 255, 375
BtgZI GCGATG 1 cut(s) 44
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 481
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 276, 554
Cac8I GCNNGC 2 cut(s) 313, 317
CfoI GCGC 2 cut(s) 117, 289
Cfr10I RCCGGY 2 cut(s) 148, 315
Cfr13I GGNCC 2 cut(s) 4, 518
CseI GACGC 2 cut(s) 205, 220
Csp6I GTAC 3 cut(s) 265, 330, 344
CviJI RGCY 5 cut(s) 139, 185, 373, 414, 490
CviKI_1 RGCY 5 cut(s) 139, 185, 373, 414, 490
CviQI GTAC 3 cut(s) 265, 330, 344
DdeI CTNAG 4 cut(s) 181, 255, 282, 375
DinI GGCGCC 1 cut(s) 116
DpnI GATC 3 cut(s) 261, 389, 450
DpnII GATC 3 cut(s) 259, 387, 448
DraIII CACNNNGTG 2 cut(s) 205, 560
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 4, 518
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 171
Eco81I CCTNAGG 2 cut(s) 255, 375
Eco91I GGTNACC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 518
EcoO65I GGTNACC 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 141
EgeI GGCGCC 1 cut(s) 116
EheI GGCGCC 1 cut(s) 116
FaiI YATR 5 cut(s) 123, 269, 417, 484, 540
FaqI GGGAC 1 cut(s) 236
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 2 cut(s) 82, 229
FokI GGATG 1 cut(s) 488
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 2 cut(s) 82, 229
FspBI CTAG 2 cut(s) 333, 383
GlaI GCGC 2 cut(s) 116, 288
GluI GCNGC 2 cut(s) 82, 229
HaeII RGCGCY 1 cut(s) 118
HapII CCGG 4 cut(s) 43, 149, 166, 316
HgaI GACGC 2 cut(s) 205, 220
HhaI GCGC 2 cut(s) 117, 289
Hin1I GRCGYC 3 cut(s) 115, 131, 231
Hin6I GCGC 2 cut(s) 115, 287
HinP1I GCGC 2 cut(s) 115, 287
HinfI GANTC 1 cut(s) 179
HpaII CCGG 4 cut(s) 43, 149, 166, 316
HphI GGTGA 2 cut(s) 61, 217
Hpy166II GTNNAC 3 cut(s) 214, 238, 484
Hpy188I TCNGA 3 cut(s) 136, 195, 448
Hpy188III TCNNGA 3 cut(s) 357, 452, 499
Hpy8I GTNNAC 3 cut(s) 214, 238, 484
Hpy99I CGWCG 5 cut(s) 130, 133, 136, 199, 236
HpyCH4III ACNGT 2 cut(s) 211, 323
HpyCH4IV ACGT 3 cut(s) 66, 131, 346
HpyCH4V TGCA 6 cut(s) 21, 30, 274, 419, 512, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 145
HpyF3I CTNAG 4 cut(s) 181, 255, 282, 375
HpySE526I ACGT 3 cut(s) 66, 131, 346
Hsp92I GRCGYC 3 cut(s) 115, 131, 231
HspAI GCGC 2 cut(s) 115, 287
KasI GGCGCC 1 cut(s) 114
KroI GCCGGC 1 cut(s) 315
KroNI GCCGGC 1 cut(s) 317
Kzo9I GATC 3 cut(s) 259, 387, 448
LmnI GCTCC 3 cut(s) 60, 136, 144
Lsp1109I GCAGC 1 cut(s) 93
MaeI CTAG 2 cut(s) 333, 383
MaeII ACGT 3 cut(s) 66, 131, 346
MaeIII GTNAC 3 cut(s) 67, 205, 560
MalI GATC 3 cut(s) 261, 389, 450
MboI GATC 3 cut(s) 259, 387, 448
MboII GAAGA 2 cut(s) 238, 293
MflI RGATCY 2 cut(s) 387, 448
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 2 cut(s) 398, 494
Mly113I GGCGCC 1 cut(s) 115
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 2 cut(s) 114, 218
MnlI CCTC 8 cut(s) 45, 97, 162, 250, 277, 384, 466, 472
Mph1103I ATGCAT 1 cut(s) 544
MroNI GCCGGC 1 cut(s) 315
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 310
MspI CCGG 4 cut(s) 43, 149, 166, 316
Mva1269I GAATGC 1 cut(s) 30
MvnI CGCG 2 cut(s) 228, 311
MwoI GCNNNNNNNGC 2 cut(s) 27, 145
NaeI GCCGGC 1 cut(s) 317
NarI GGCGCC 1 cut(s) 115
NdeII GATC 3 cut(s) 259, 387, 448
NgoMIV GCCGGC 1 cut(s) 315
NlaIV GGNNCC 2 cut(s) 116, 519
NmeAIII GCCGAG 1 cut(s) 102
NmuCI GTSAC 3 cut(s) 67, 205, 560
NsiI ATGCAT 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PctI GAATGC 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 317
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 2 cut(s) 83, 230
PleI GAGTC 1 cut(s) 173
PluTI GGCGCC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 347
PpuMI RGGWCCY 1 cut(s) 518
PshAI GACNNNNGTC 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 518
PspEI GGTNACC 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 116, 519
PspPI GGNCC 2 cut(s) 4, 518
PspPPI RGGWCCY 1 cut(s) 518
PsuI RGATCY 2 cut(s) 387, 448
PsyI GACNNNGTC 1 cut(s) 130
RsaI GTAC 3 cut(s) 266, 331, 345
RsaNI GTAC 3 cut(s) 265, 330, 344
RseI CAYNNNNRTG 1 cut(s) 310
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 82, 229
Sau3AI GATC 3 cut(s) 259, 387, 448
Sau96I GGNCC 2 cut(s) 4, 518
SchI GAGTC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 141
SetI ASST 9 cut(s) 69, 74, 89, 134, 141, 187, 207, 349, 483
SfoI GGCGCC 1 cut(s) 116
SinI GGWCC 2 cut(s) 4, 518
SmiMI CAYNNNNRTG 1 cut(s) 310
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 2 cut(s) 398, 494
SsiI CCGC 1 cut(s) 228
SspDI GGCGCC 1 cut(s) 114
SspMI CTAG 2 cut(s) 333, 383
SstI GAGCTC 1 cut(s) 141
TaaI ACNGT 2 cut(s) 211, 323
TaiI ACGT 3 cut(s) 69, 134, 349
TaqII GACCGA 1 cut(s) 234
TasI AATT 2 cut(s) 398, 494
TatI WGTACW 2 cut(s) 264, 329
TauI GCSGC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 2 cut(s) 283, 561
TseFI GTSAC 3 cut(s) 67, 205, 560
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 3 cut(s) 67, 205, 560
TspRI CASTG 2 cut(s) 283, 561
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 4, 518
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 2 cut(s) 333, 383
ZraI GACGTC 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.