Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32550 AT1G32550 |
| fragaria_vesca | FvH4_5g21760 FvH4_5g21760 FvH4_5g21760 FvH4_5g21760 |
| malus_domestica | MD06G1032600.v1.1 MD16G1276600.v1.1 |
| prunus_persica | Prupe.5G039500_v2.0.a1 Prupe.5G039500_v2.0.a1 |
| pyrus_communis | pycom06g02700 pycom16g24590 |
| rosa_chinensis | RchiOBHm_Chr7g0209251 |
| rosa_laevigata | RLG00000003153 |
| rosa_multiflora | Rmu_sc0001701.1_g000014 |
| rosa_roxburghii | Rroxscaffold_3G00249590 |
| rosa_rugosa | Rorug07G0110800 |
| rosa_samantha | Rh7AG244700 Rh7BG240000 Rh7CG260300 Rh7DG251600 |
| rosa_wichuraiana | Rw7G020760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2219 |
| Acc16I | TGCGCA | 1 cut(s) | 1174 |
| Acc36I | ACCTGC | 1 cut(s) | 184 |
| Acc65I | GGTACC | 1 cut(s) | 1559 |
| AccB1I | GGYRCC | 2 cut(s) | 1559, 2312 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2390 |
| AccBSI | CCGCTC | 1 cut(s) | 181 |
| AccI | GTMKAC | 4 cut(s) | 412, 793, 1544, 2547 |
| AccIII | TCCGGA | 2 cut(s) | 852, 2629 |
| AciI | CCGC | 3 cut(s) | 181, 1161, 1213 |
| AclWI | GGATC | 6 cut(s) | 808, 1141, 1154, 1469, 1694, 1712 |
| AcsI | RAATTY | 5 cut(s) | 524, 1532, 1850, 2338, 2799 |
| AcuI | CTGAAG | 3 cut(s) | 201, 567, 2070 |
| AfaI | GTAC | 5 cut(s) | 480, 1272, 1428, 1561, 2001 |
| AfeI | AGCGCT | 1 cut(s) | 2159 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 924, 1513, 1556, 2002, 2309, 2390, 2520 |
| AflII | CTTAAG | 1 cut(s) | 1964 |
| AflIII | ACRYGT | 4 cut(s) | 847, 1227, 2090, 2414 |
| AjiI | CACGTC | 3 cut(s) | 797, 2417, 2955 |
| AjnI | CCWGG | 8 cut(s) | 910, 1563, 1995, 2302, 2315, 2389, 2574, 2675 |
| Alw21I | GWGCWC | 2 cut(s) | 510, 2935 |
| Alw26I | GTCTC | 7 cut(s) | 1352, 1511, 1750, 1792, 2053, 2109, 2258 |
| AlwI | GGATC | 6 cut(s) | 808, 1141, 1154, 1469, 1694, 1712 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 911, 1240, 1748 |
| Ama87I | CYCGRG | 2 cut(s) | 282, 2928 |
| Aor13HI | TCCGGA | 2 cut(s) | 852, 2629 |
| Aor51HI | AGCGCT | 1 cut(s) | 2159 |
| AoxI | GGCC | 6 cut(s) | 84, 1318, 2241, 2650, 2832, 2913 |
| ApaI | GGGCCC | 2 cut(s) | 2245, 2836 |
| ApeKI | GCWGC | 7 cut(s) | 263, 1291, 1372, 2492, 2495, 2618, 2729 |
| ApoI | RAATTY | 5 cut(s) | 524, 1532, 1850, 2338, 2799 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1517, 1549 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 277, 2820 |
| Asp718I | GGTACC | 1 cut(s) | 1559 |
| AspLEI | GCGC | 2 cut(s) | 1175, 2160 |
| AsuHPI | GGTGA | 8 cut(s) | 188, 443, 1028, 1480, 1944, 2045, 2127, 2747 |
| AsuNHI | GCTAGC | 1 cut(s) | 1439 |
| AvaI | CYCGRG | 2 cut(s) | 282, 2928 |
| AvaII | GGWCC | 5 cut(s) | 403, 753, 1086, 2297, 2466 |
| BaeGI | GKGCMC | 3 cut(s) | 1882, 2245, 2836 |
| BamHI | GGATCC | 1 cut(s) | 1146 |
| BanI | GGYRCC | 2 cut(s) | 1559, 2312 |
| BanII | GRGCYC | 3 cut(s) | 637, 2245, 2836 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 344, 376 |
| BauI | CACGAG | 1 cut(s) | 1985 |
| BbsI | GAAGAC | 3 cut(s) | 251, 352, 2058 |
| Bbv12I | GWGCWC | 2 cut(s) | 510, 2935 |
| BbvCI | CCTCAGC | 1 cut(s) | 2193 |
| BbvI | GCAGC | 7 cut(s) | 250, 1303, 1359, 2504, 2507, 2630, 2741 |
| BccI | CCATC | 7 cut(s) | 508, 719, 1137, 1429, 1628, 1898, 2872 |
| BceAI | ACGGC | 1 cut(s) | 25 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2909, 2922, 2943, 2956 |
| BciT130I | CCWGG | 8 cut(s) | 912, 1565, 1997, 2304, 2317, 2391, 2576, 2677 |
| BcoDI | GTCTC | 7 cut(s) | 1352, 1511, 1750, 1792, 2053, 2109, 2258 |
| BfmI | CTRYAG | 4 cut(s) | 413, 804, 1399, 2025 |
| BfoI | RGCGCY | 1 cut(s) | 2161 |
| BfrI | CTTAAG | 1 cut(s) | 1964 |
| BfuAI | ACCTGC | 1 cut(s) | 184 |
| BglII | AGATCT | 1 cut(s) | 2714 |
| BisI | GCNGC | 7 cut(s) | 264, 1292, 1373, 2493, 2496, 2619, 2730 |
| BlpI | GCTNAGC | 1 cut(s) | 2669 |
| BlsI | GCNGC | 7 cut(s) | 265, 1293, 1374, 2494, 2497, 2620, 2731 |
| Bme1390I | CCNGG | 8 cut(s) | 912, 1565, 1997, 2304, 2317, 2391, 2576, 2677 |
| Bme18I | GGWCC | 5 cut(s) | 403, 753, 1086, 2297, 2466 |
| BmeT110I | CYCGRG | 2 cut(s) | 282, 2928 |
| BmgBI | CACGTC | 3 cut(s) | 797, 2417, 2955 |
| BmrFI | CCNGG | 8 cut(s) | 912, 1565, 1997, 2304, 2317, 2391, 2576, 2677 |
| BmrI | ACTGGG | 3 cut(s) | 1277, 1521, 1537 |
| BmsI | GCATC | 6 cut(s) | 614, 1246, 1888, 1958, 2635, 2645 |
| BmtI | GCTAGC | 1 cut(s) | 1443 |
| BmuI | ACTGGG | 3 cut(s) | 1277, 1521, 1537 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2295 |
| BpiI | GAAGAC | 3 cut(s) | 251, 352, 2058 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 28, 104, 136 |
| BpmI | CTGGAG | 3 cut(s) | 494, 2325, 2659 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2193 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2669 |
| BpuEI | CTTGAG | 2 cut(s) | 1558, 1774 |
| BsaWI | WCCGGW | 2 cut(s) | 852, 2629 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 924, 1513, 1556, 2002, 2309, 2390, 2520 |
| Bse1I | ACTGG | 8 cut(s) | 541, 1037, 1283, 1516, 1532, 1653, 2357, 2483 |
| BseAI | TCCGGA | 2 cut(s) | 852, 2629 |
| BseBI | CCWGG | 8 cut(s) | 912, 1565, 1997, 2304, 2317, 2391, 2576, 2677 |
| BseGI | GGATG | 4 cut(s) | 1372, 2152, 2626, 3012 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 924, 1513, 1556, 2002, 2309, 2390, 2520 |
| BseMII | CTCAG | 4 cut(s) | 177, 969, 1635, 2184 |
| BseNI | ACTGG | 8 cut(s) | 541, 1037, 1283, 1516, 1532, 1653, 2357, 2483 |
| BseRI | GAGGAG | 2 cut(s) | 273, 2210 |
| BseSI | GKGCMC | 3 cut(s) | 1882, 2245, 2836 |
| BseXI | GCAGC | 7 cut(s) | 250, 1303, 1359, 2504, 2507, 2630, 2741 |
| BsgI | GTGCAG | 2 cut(s) | 205, 2637 |
| BshFI | GGCC | 6 cut(s) | 86, 1320, 2243, 2652, 2834, 2915 |
| BshNI | GGYRCC | 2 cut(s) | 1559, 2312 |
| BsiHKAI | GWGCWC | 2 cut(s) | 510, 2935 |
| BsiHKCI | CYCGRG | 2 cut(s) | 282, 2928 |
| BsiSI | CCGG | 2 cut(s) | 853, 2630 |
| BslFI | GGGAC | 3 cut(s) | 389, 766, 2452 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 924, 1513, 1556, 2002, 2309, 2390, 2520 |
| BsmAI | GTCTC | 7 cut(s) | 1352, 1511, 1750, 1792, 2053, 2109, 2258 |
| BsmFI | GGGAC | 3 cut(s) | 389, 766, 2452 |
| BsmI | GAATGC | 3 cut(s) | 266, 1175, 1375 |
| BsnI | GGCC | 6 cut(s) | 86, 1320, 2243, 2652, 2834, 2915 |
| BsoBI | CYCGRG | 2 cut(s) | 282, 2928 |
| Bsp120I | GGGCCC | 2 cut(s) | 2241, 2832 |
| Bsp1286I | GDGCHC | 6 cut(s) | 510, 637, 1882, 2245, 2836, 2935 |
| Bsp13I | TCCGGA | 2 cut(s) | 852, 2629 |
| Bsp1407I | TGTACA | 1 cut(s) | 1270 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2669 |
| BspACI | CCGC | 3 cut(s) | 181, 1161, 1213 |
| BspANI | GGCC | 6 cut(s) | 86, 1320, 2243, 2652, 2834, 2915 |
| BspCNI | CTCAG | 4 cut(s) | 176, 970, 1634, 2185 |
| BspEI | TCCGGA | 2 cut(s) | 852, 2629 |
| BspMI | ACCTGC | 1 cut(s) | 184 |
| BspOI | GCTAGC | 1 cut(s) | 1443 |
| BspPI | GGATC | 6 cut(s) | 808, 1141, 1154, 1469, 1694, 1712 |
| BspT107I | GGYRCC | 2 cut(s) | 1559, 2312 |
| BspTI | CTTAAG | 1 cut(s) | 1964 |
| BsrBI | CCGCTC | 1 cut(s) | 181 |
| BsrGI | TGTACA | 1 cut(s) | 1270 |
| BsrI | ACTGG | 8 cut(s) | 541, 1037, 1283, 1516, 1532, 1653, 2357, 2483 |
| BssSI | CACGAG | 1 cut(s) | 1985 |
| BssT1I | CCWWGG | 3 cut(s) | 833, 1464, 2997 |
| Bst2BI | CACGAG | 1 cut(s) | 1985 |
| Bst2UI | CCWGG | 8 cut(s) | 912, 1565, 1997, 2304, 2317, 2391, 2576, 2677 |
| Bst4CI | ACNGT | 3 cut(s) | 580, 762, 1860 |
| Bst6I | CTCTTC | 4 cut(s) | 143, 164, 1655, 2661 |
| BstAFI | CTTAAG | 1 cut(s) | 1964 |
| BstAUI | TGTACA | 1 cut(s) | 1270 |
| BstC8I | GCNNGC | 8 cut(s) | 93, 318, 999, 1441, 1947, 2202, 2650, 2922 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1554, 2000 |
| BstF5I | GGATG | 4 cut(s) | 1372, 2152, 2626, 3012 |
| BstH2I | RGCGCY | 1 cut(s) | 2161 |
| BstHHI | GCGC | 2 cut(s) | 1175, 2160 |
| BstMAI | GTCTC | 7 cut(s) | 1352, 1511, 1750, 1792, 2053, 2109, 2258 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 92, 218, 2912, 2921, 2930 |
| BstNI | CCWGG | 8 cut(s) | 912, 1565, 1997, 2304, 2317, 2391, 2576, 2677 |
| BstNSI | RCATGY | 2 cut(s) | 851, 2094 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2295 |
| BstSCI | CCNGG | 8 cut(s) | 910, 1563, 1995, 2302, 2315, 2389, 2574, 2675 |
| BstSFI | CTRYAG | 4 cut(s) | 413, 804, 1399, 2025 |
| BstSLI | GKGCMC | 3 cut(s) | 1882, 2245, 2836 |
| BstV1I | GCAGC | 7 cut(s) | 250, 1303, 1359, 2504, 2507, 2630, 2741 |
| BstV2I | GAAGAC | 3 cut(s) | 251, 352, 2058 |
| BstX2I | RGATCY | 3 cut(s) | 800, 1146, 2714 |
| BstYI | RGATCY | 3 cut(s) | 800, 1146, 2714 |
| BsuRI | GGCC | 6 cut(s) | 86, 1320, 2243, 2652, 2834, 2915 |
| BtrI | CACGTC | 3 cut(s) | 797, 2417, 2955 |
| BtsCI | GGATG | 4 cut(s) | 1372, 2152, 2626, 3012 |
| BtsIMutI | CAGTG | 4 cut(s) | 1629, 1660, 1727, 2490 |
| BveI | ACCTGC | 1 cut(s) | 184 |
| Cac8I | GCNNGC | 8 cut(s) | 93, 318, 999, 1441, 1947, 2202, 2650, 2922 |
| CaiI | CAGNNNCTG | 3 cut(s) | 911, 1240, 1748 |
| CfoI | GCGC | 2 cut(s) | 1175, 2160 |
| CsiI | ACCWGGT | 1 cut(s) | 2389 |
| Csp6I | GTAC | 5 cut(s) | 479, 1271, 1427, 1560, 2000 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 370, 405, 1636, 1671 |
| CviQI | GTAC | 5 cut(s) | 479, 1271, 1427, 1560, 2000 |
| DraI | TTTAAA | 1 cut(s) | 2118 |
| Eam1104I | CTCTTC | 4 cut(s) | 143, 164, 1655, 2661 |
| EarI | CTCTTC | 4 cut(s) | 143, 164, 1655, 2661 |
| EciI | GGCGGA | 1 cut(s) | 1150 |
| Eco130I | CCWWGG | 3 cut(s) | 833, 1464, 2997 |
| Eco147I | AGGCCT | 1 cut(s) | 1320 |
| Eco24I | GRGCYC | 3 cut(s) | 637, 2245, 2836 |
| Eco47I | GGWCC | 5 cut(s) | 403, 753, 1086, 2297, 2466 |
| Eco47III | AGCGCT | 1 cut(s) | 2159 |
| Eco57I | CTGAAG | 3 cut(s) | 201, 567, 2070 |
| Eco88I | CYCGRG | 2 cut(s) | 282, 2928 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1554, 2000 |
| EcoO109I | RGGNCCY | 5 cut(s) | 753, 2241, 2242, 2297, 2833 |
| EcoRII | CCWGG | 8 cut(s) | 910, 1563, 1995, 2302, 2315, 2389, 2574, 2675 |
| EcoT14I | CCWWGG | 3 cut(s) | 833, 1464, 2997 |
| EcoT22I | ATGCAT | 1 cut(s) | 2628 |
| EcoT38I | GRGCYC | 3 cut(s) | 637, 2245, 2836 |
| ErhI | CCWWGG | 3 cut(s) | 833, 1464, 2997 |
| FaqI | GGGAC | 3 cut(s) | 389, 766, 2452 |
| FauI | CCCGC | 1 cut(s) | 1220 |
| FauNDI | CATATG | 3 cut(s) | 958, 1813, 2704 |
| FblI | GTMKAC | 4 cut(s) | 412, 793, 1544, 2547 |
| Fnu4HI | GCNGC | 7 cut(s) | 264, 1292, 1373, 2493, 2496, 2619, 2730 |
| FokI | GGATG | 4 cut(s) | 1379, 2159, 2613, 2999 |
| FriOI | GRGCYC | 3 cut(s) | 637, 2245, 2836 |
| Fsp4HI | GCNGC | 7 cut(s) | 264, 1292, 1373, 2493, 2496, 2619, 2730 |
| FspAI | RTGCGCAY | 1 cut(s) | 1174 |
| FspI | TGCGCA | 1 cut(s) | 1174 |
| GlaI | GCGC | 2 cut(s) | 1174, 2159 |
| GluI | GCNGC | 7 cut(s) | 264, 1292, 1373, 2493, 2496, 2619, 2730 |
| GsuI | CTGGAG | 3 cut(s) | 494, 2325, 2659 |
| HaeII | RGCGCY | 1 cut(s) | 2161 |
| HaeIII | GGCC | 6 cut(s) | 86, 1320, 2243, 2652, 2834, 2915 |
| HapII | CCGG | 2 cut(s) | 853, 2630 |
| HhaI | GCGC | 2 cut(s) | 1175, 2160 |
| Hin6I | GCGC | 2 cut(s) | 1173, 2158 |
| HinP1I | GCGC | 2 cut(s) | 1173, 2158 |
| HincII | GTYRAC | 5 cut(s) | 294, 370, 576, 794, 2548 |
| HindII | GTYRAC | 5 cut(s) | 294, 370, 576, 794, 2548 |
| HindIII | AAGCTT | 3 cut(s) | 1026, 2271, 2922 |
| HpaI | GTTAAC | 2 cut(s) | 294, 370 |
| HpaII | CCGG | 2 cut(s) | 853, 2630 |
| HphI | GGTGA | 8 cut(s) | 188, 443, 1028, 1480, 1944, 2045, 2127, 2747 |
| Hpy99I | CGWCG | 1 cut(s) | 798 |
| HpyCH4III | ACNGT | 3 cut(s) | 580, 762, 1860 |
| HpyCH4IV | ACGT | 4 cut(s) | 796, 1229, 2416, 2954 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 92, 218, 2912, 2921, 2930 |
| HpySE526I | ACGT | 4 cut(s) | 796, 1229, 2416, 2954 |
| HspAI | GCGC | 2 cut(s) | 1173, 2158 |
| Kpn2I | TCCGGA | 2 cut(s) | 852, 2629 |
| KpnI | GGTACC | 1 cut(s) | 1563 |
| KspAI | GTTAAC | 2 cut(s) | 294, 370 |
| LmnI | GCTCC | 8 cut(s) | 17, 217, 260, 513, 2197, 2306, 2424, 2678 |
| Lsp1109I | GCAGC | 7 cut(s) | 250, 1303, 1359, 2504, 2507, 2630, 2741 |
| LweI | GCATC | 6 cut(s) | 614, 1246, 1888, 1958, 2635, 2645 |
| MabI | ACCWGGT | 1 cut(s) | 2389 |
| MaeII | ACGT | 4 cut(s) | 796, 1229, 2416, 2954 |
| MbiI | CCGCTC | 1 cut(s) | 181 |
| MfeI | CAATTG | 2 cut(s) | 310, 626 |
| MflI | RGATCY | 3 cut(s) | 800, 1146, 2714 |
| MhlI | GDGCHC | 6 cut(s) | 510, 637, 1882, 2245, 2836, 2935 |
| MlyI | GAGTC | 5 cut(s) | 872, 1790, 2111, 2610, 2948 |
| MmeI | TCCRAC | 1 cut(s) | 37 |
| Mph1103I | ATGCAT | 1 cut(s) | 2628 |
| MroI | TCCGGA | 2 cut(s) | 852, 2629 |
| MroXI | GAANNNNTTC | 2 cut(s) | 277, 2820 |
| MseI | TTAA | 8 cut(s) | 77, 293, 369, 818, 1596, 1640, 1965, 2117 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2419, 2591, 3024 |
| MspA1I | CMGCKG | 2 cut(s) | 221, 2048 |
| MspCI | CTTAAG | 1 cut(s) | 1964 |
| MspI | CCGG | 2 cut(s) | 853, 2630 |
| MspR9I | CCNGG | 8 cut(s) | 912, 1565, 1997, 2304, 2317, 2391, 2576, 2677 |
| MunI | CAATTG | 2 cut(s) | 310, 626 |
| Mva1269I | GAATGC | 3 cut(s) | 266, 1175, 1375 |
| MvaI | CCWGG | 8 cut(s) | 912, 1565, 1997, 2304, 2317, 2391, 2576, 2677 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 92, 218, 2912, 2921, 2930 |
| NdeI | CATATG | 3 cut(s) | 958, 1813, 2704 |
| NheI | GCTAGC | 1 cut(s) | 1439 |
| NmuCI | GTSAC | 4 cut(s) | 740, 1793, 2086, 2288 |
| NsbI | TGCGCA | 1 cut(s) | 1174 |
| NsiI | ATGCAT | 1 cut(s) | 2628 |
| NspI | RCATGY | 2 cut(s) | 851, 2094 |
| PaeR7I | CTCGAG | 1 cut(s) | 2928 |
| PasI | CCCWGGG | 1 cut(s) | 1564 |
| PceI | AGGCCT | 1 cut(s) | 1320 |
| PciI | ACATGT | 2 cut(s) | 847, 2090 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 790 |
| PctI | GAATGC | 3 cut(s) | 266, 1175, 1375 |
| PdmI | GAANNNNTTC | 2 cut(s) | 277, 2820 |
| PflFI | GACNNNGTC | 2 cut(s) | 53, 101 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2390 |
| PfoI | TCCNGGA | 1 cut(s) | 2302 |
| PkrI | GCNGC | 7 cut(s) | 265, 1293, 1374, 2494, 2497, 2620, 2731 |
| PleI | GAGTC | 5 cut(s) | 872, 1790, 2110, 2609, 2947 |
| PpsI | GAGTC | 5 cut(s) | 872, 1790, 2110, 2609, 2947 |
| PpuMI | RGGWCCY | 2 cut(s) | 753, 2297 |
| PscI | ACATGT | 2 cut(s) | 847, 2090 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2295 |
| PsiI | TTATAA | 1 cut(s) | 2219 |
| Psp5II | RGGWCCY | 2 cut(s) | 753, 2297 |
| Psp6I | CCWGG | 8 cut(s) | 910, 1563, 1995, 2302, 2315, 2389, 2574, 2675 |
| PspGI | CCWGG | 8 cut(s) | 910, 1563, 1995, 2302, 2315, 2389, 2574, 2675 |
| PspOMI | GGGCCC | 2 cut(s) | 2241, 2832 |
| PspPPI | RGGWCCY | 2 cut(s) | 753, 2297 |
| PstNI | CAGNNNCTG | 3 cut(s) | 911, 1240, 1748 |
| PsuI | RGATCY | 3 cut(s) | 800, 1146, 2714 |
| PsyI | GACNNNGTC | 2 cut(s) | 53, 101 |
| PvuII | CAGCTG | 2 cut(s) | 221, 2048 |
| RsaI | GTAC | 5 cut(s) | 480, 1272, 1428, 1561, 2001 |
| RsaNI | GTAC | 5 cut(s) | 479, 1271, 1427, 1560, 2000 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2419, 2591, 3024 |
| SalI | GTCGAC | 2 cut(s) | 792, 2546 |
| SaqAI | TTAA | 8 cut(s) | 77, 293, 369, 818, 1596, 1640, 1965, 2117 |
| SatI | GCNGC | 7 cut(s) | 264, 1292, 1373, 2493, 2496, 2619, 2730 |
| SchI | GAGTC | 5 cut(s) | 872, 1790, 2111, 2610, 2948 |
| ScrFI | CCNGG | 8 cut(s) | 912, 1565, 1997, 2304, 2317, 2391, 2576, 2677 |
| SduI | GDGCHC | 6 cut(s) | 510, 637, 1882, 2245, 2836, 2935 |
| SexAI | ACCWGGT | 1 cut(s) | 2389 |
| SfaNI | GCATC | 6 cut(s) | 614, 1246, 1888, 1958, 2635, 2645 |
| SfcI | CTRYAG | 4 cut(s) | 413, 804, 1399, 2025 |
| Sfr274I | CTCGAG | 1 cut(s) | 2928 |
| SinI | GGWCC | 5 cut(s) | 403, 753, 1086, 2297, 2466 |
| SlaI | CTCGAG | 1 cut(s) | 2928 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2419, 2591, 3024 |
| SmlI | CTYRAG | 4 cut(s) | 1573, 1789, 1964, 2928 |
| SmoI | CTYRAG | 4 cut(s) | 1573, 1789, 1964, 2928 |
| SseBI | AGGCCT | 1 cut(s) | 1320 |
| SsiI | CCGC | 3 cut(s) | 181, 1161, 1213 |
| StuI | AGGCCT | 1 cut(s) | 1320 |
| StyD4I | CCNGG | 8 cut(s) | 910, 1563, 1995, 2302, 2315, 2389, 2574, 2675 |
| StyI | CCWWGG | 3 cut(s) | 833, 1464, 2997 |
| TaaI | ACNGT | 3 cut(s) | 580, 762, 1860 |
| TaiI | ACGT | 4 cut(s) | 799, 1232, 2419, 2957 |
| TaqI | TCGA | 9 cut(s) | 147, 256, 793, 1141, 1287, 2252, 2547, 2876, 2929 |
| TaqII | GACCGA | 1 cut(s) | 2198 |
| TatI | WGTACW | 2 cut(s) | 478, 1270 |
| Tru1I | TTAA | 8 cut(s) | 77, 293, 369, 818, 1596, 1640, 1965, 2117 |
| Tru9I | TTAA | 8 cut(s) | 77, 293, 369, 818, 1596, 1640, 1965, 2117 |
| TscAI | CASTG | 4 cut(s) | 1629, 1660, 1734, 2490 |
| TseFI | GTSAC | 4 cut(s) | 740, 1793, 2086, 2288 |
| TseI | GCWGC | 7 cut(s) | 263, 1291, 1372, 2492, 2495, 2618, 2729 |
| Tsp45I | GTSAC | 4 cut(s) | 740, 1793, 2086, 2288 |
| TspDTI | ATGAA | 9 cut(s) | 576, 761, 945, 1043, 1767, 2624, 2724, 2828, 2900 |
| TspGWI | ACGGA | 5 cut(s) | 355, 387, 1444, 2823, 2973 |
| TspRI | CASTG | 4 cut(s) | 1629, 1660, 1734, 2490 |
| Tth111I | GACNNNGTC | 2 cut(s) | 53, 101 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2390 |
| Vha464I | CTTAAG | 1 cut(s) | 1964 |
| VpaK11BI | GGWCC | 5 cut(s) | 403, 753, 1086, 2297, 2466 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1554, 2000 |
| XapI | RAATTY | 5 cut(s) | 524, 1532, 1850, 2338, 2799 |
| XbaI | TCTAGA | 2 cut(s) | 584, 2659 |
| XceI | RCATGY | 2 cut(s) | 851, 2094 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1652 |
| XhoI | CTCGAG | 1 cut(s) | 2928 |
| XmiI | GTMKAC | 4 cut(s) | 412, 793, 1544, 2547 |
| XmnI | GAANNNNTTC | 2 cut(s) | 277, 2820 |
| Zsp2I | ATGCAT | 1 cut(s) | 2628 |