Rh7CG260300

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009435
Physical Location & Seq
Reverse (-)
25378320 .. 25380006
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG260300.1

Sequence Viewer

Length: 504 bp
ATGGACCACGCCATTCCCTGCAACCCCTGCATTCCTCTGTACCGGAAGCCCACGCTCCGCCGCCGAATCACTTGGCCTACCAGCACCACCGTTCGCCACTCCAATACAACAAAATGGCGCCGCAATACGACGTCGTCGGAGCTCCAAATGCCCGTAGAAGTGAACGACCGAACGAGTAGCGACTCCGCTTCAGTCCCGACGCACAAAGTCACCGTCCACGACAGACAACGCGGCGTCGTACACGAGTTCTTCGTCCCAGAGGATCAGTACATATTGCACACTGCTGAGGCACAGAACATCACTCTTCCATTCGCTTGCCGGCACGGTTGTTGTACTAGTTGTGCTGGATATGCACTTCTCTGTGTGGGTTTTCCATCATCTGATCTTGAAGTAGAAACACAAGATGAGGATGAGGTATACTGGCTTCAATTCGGGAGATATTTTGCACGGGGTCCAATAGAAAGAGATGATTATGCATTGGAGTTGGCATTGGGTGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

167

Amino Acids

19.09

Weight (kDa)

5.62

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 80 - 119 3.2e-08 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 417
AccII CGCG 1 cut(s) 231
AciI CCGC 5 cut(s) 58, 61, 121, 186, 231
AclWI GGATC 1 cut(s) 270
AcuI CTGAAG 1 cut(s) 174
AcyI GRCGYC 3 cut(s) 118, 131, 234
AfaI GTAC 4 cut(s) 41, 240, 269, 334
AgsI TTSAA 2 cut(s) 389, 428
AhlI ACTAGT 1 cut(s) 335
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw21I GWGCWC 1 cut(s) 144
AlwI GGATC 1 cut(s) 270
AoxI GGCC 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 4, 452
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 2 cut(s) 4, 452
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 144
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
BauI CACGAG 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 285
BccI CCATC 1 cut(s) 382
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 3 cut(s) 61, 121, 232
BlsI GCNGC 3 cut(s) 62, 122, 233
Bme18I GGWCC 2 cut(s) 4, 452
BmgT120I GGNCC 2 cut(s) 4, 452
BmiI GGNNCC 2 cut(s) 119, 453
Bpu10I CCTNAGC 1 cut(s) 285
BsaHI GRCGYC 3 cut(s) 118, 131, 234
BsaWI WCCGGW 1 cut(s) 42
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 425
BseGI GGATG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 2 cut(s) 43, 319
BslFI GGGAC 2 cut(s) 179, 239
BsmFI GGGAC 2 cut(s) 179, 239
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 262, 382
BspACI CCGC 5 cut(s) 58, 61, 121, 186, 231
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 119, 453
BspPI GGATC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 318
BssMI GATC 2 cut(s) 262, 382
BssNAI GTATAC 1 cut(s) 418
BssNI GRCGYC 3 cut(s) 118, 131, 234
BssSI CACGAG 1 cut(s) 242
Bst1107I GTATAC 1 cut(s) 418
Bst2BI CACGAG 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 91, 214, 326
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 3 cut(s) 118, 131, 234
BstAPI GCANNNNNTGC 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 316, 320
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 265, 385
BstMBI GATC 2 cut(s) 262, 382
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 3 cut(s) 27, 148, 350
BstUI CGCG 1 cut(s) 231
BstZ17I GTATAC 1 cut(s) 418
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 316, 320
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 4, 452
CseI GACGC 2 cut(s) 208, 223
Csp6I GTAC 4 cut(s) 40, 239, 268, 333
CviJI RGCY 4 cut(s) 49, 76, 142, 424
CviKI_1 RGCY 4 cut(s) 49, 76, 142, 424
CviQI GTAC 4 cut(s) 40, 239, 268, 333
DdeI CTNAG 1 cut(s) 285
DinI GGCGCC 1 cut(s) 119
DpnI GATC 2 cut(s) 264, 384
DpnII GATC 2 cut(s) 262, 382
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EciI GGCGGA 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 4, 452
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 119
EheI GGCGCC 1 cut(s) 119
FaiI YATR 4 cut(s) 272, 351, 418, 474
FaqI GGGAC 2 cut(s) 179, 239
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 3 cut(s) 61, 121, 232
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 3 cut(s) 61, 121, 232
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 119
GluI GCNGC 3 cut(s) 61, 121, 232
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 76
HapII CCGG 2 cut(s) 43, 319
HgaI GACGC 2 cut(s) 208, 223
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 3 cut(s) 118, 131, 234
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 2 cut(s) 66, 182
HpaII CCGG 2 cut(s) 43, 319
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 4 cut(s) 163, 217, 241, 418
Hpy188I TCNGA 2 cut(s) 139, 382
Hpy188III TCNNGA 3 cut(s) 196, 386, 433
Hpy8I GTNNAC 4 cut(s) 163, 217, 241, 418
Hpy99I CGWCG 5 cut(s) 133, 136, 139, 202, 239
HpyCH4III ACNGT 3 cut(s) 91, 214, 326
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 6 cut(s) 21, 30, 277, 353, 446, 476
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 148, 350
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 131
Hsp92I GRCGYC 3 cut(s) 118, 131, 234
HspAI GCGC 1 cut(s) 118
KasI GGCGCC 1 cut(s) 117
KroI GCCGGC 1 cut(s) 318
KroNI GCCGGC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 262, 382
LmnI GCTCC 3 cut(s) 60, 139, 147
LpnPI CCDG 8 cut(s) 31, 40, 56, 94, 270, 330, 332, 406
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 264, 384
MboI GATC 2 cut(s) 262, 382
MboII GAAGA 2 cut(s) 241, 296
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 1 cut(s) 428
Mly113I GGCGCC 1 cut(s) 118
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 5 cut(s) 45, 253, 280, 400, 406
Mph1103I ATGCAT 1 cut(s) 478
MroNI GCCGGC 1 cut(s) 318
MspI CCGG 2 cut(s) 43, 319
Mva1269I GAATGC 1 cut(s) 30
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 27, 148, 350
NaeI GCCGGC 1 cut(s) 320
NarI GGCGCC 1 cut(s) 118
NdeII GATC 2 cut(s) 262, 382
NgoMIV GCCGGC 1 cut(s) 318
NlaIV GGNNCC 2 cut(s) 119, 453
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 478
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 3 cut(s) 62, 122, 233
PleI GAGTC 1 cut(s) 176
PluTI GGCGCC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 119, 453
PspPI GGNCC 2 cut(s) 4, 452
PsyI GACNNNGTC 1 cut(s) 133
RsaI GTAC 4 cut(s) 41, 240, 269, 334
RsaNI GTAC 4 cut(s) 40, 239, 268, 333
SacI GAGCTC 1 cut(s) 144
SatI GCNGC 3 cut(s) 61, 121, 232
Sau3AI GATC 2 cut(s) 262, 382
Sau96I GGNCC 2 cut(s) 4, 452
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 134, 144, 417
SfoI GGCGCC 1 cut(s) 119
SinI GGWCC 2 cut(s) 4, 452
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 1 cut(s) 428
SsiI CCGC 5 cut(s) 58, 61, 121, 186, 231
SspDI GGCGCC 1 cut(s) 117
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 144
TaaI ACNGT 3 cut(s) 91, 214, 326
TaiI ACGT 1 cut(s) 134
TaqII GACCGA 1 cut(s) 183
TasI AATT 1 cut(s) 428
TatI WGTACW 2 cut(s) 267, 332
TauI GCSGC 3 cut(s) 63, 123, 234
TfiI GAWTC 1 cut(s) 66
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspRI CASTG 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 4, 452
XmiI GTMKAC 1 cut(s) 417
XspI CTAG 1 cut(s) 336
ZraI GACGTC 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.