Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001701.1

Orthogroup ID

OG0009435

Physical Location & Seq

Genomic Coordinates Reverse (-)

88263 .. 90342

Gene Structure 2080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001701.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggttgaaccggtgattcacaaaaattctgttgtagtagtgaaactgccaaaggtatatcagacagatacgcaatccaacggtcccggtatctcacccacatggttaagccggtacaggcgcaggcactgcatcaccacccgttttcattatcttcttctccctccatttccaacgcggcaaacccggccaccagaattggagagcgaaaatccgatggaccacgccattccctgcaacccctgcattcctctctaccggaagcccacgctccgccgccgaatcacttggccgaccagcaccaccgttcgccactccaatacaacaaaatggcgccgcaatacgacgtcgtcggagctccaaatgcccgtagaagtgaacgaccgaacgagtagcgactctgcttcagtcccgacgcacaaagtcaccgtccacgacagacaacgcggcgtggtccacgagttcttcgttccagaggatcagtacatattgcacactgctgaggcacagaacatcactcttccattcgcttgccggcacggttgttgtactagttgtgctgtacgtgtgaagtctggaaaacttaaccagcctcaggcactagggatatcggctgaattgaaatcaaagggatatgcacttctctgtgtgggttttccatcatctgatcttgaagtagaaacacaagatgaggatgaggtatactggcttcaattcgggagatattttgcacggggtccaattgaaagagatgattatgcattggagttggcattgggtgatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Fer2

Protein Analysis

262

Amino Acids

29.92

Weight (kDa)

8.4

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32550 AT1G32550
fragaria_vesca	FvH4_5g21760 FvH4_5g21760 FvH4_5g21760 FvH4_5g21760
malus_domestica	MD06G1032600.v1.1 MD16G1276600.v1.1
prunus_persica	Prupe.5G039500_v2.0.a1 Prupe.5G039500_v2.0.a1
pyrus_communis	pycom06g02700 pycom16g24590
rosa_chinensis	RchiOBHm_Chr7g0209251
rosa_laevigata	RLG00000003153
rosa_multiflora	Rmu_sc0001701.1_g000014
rosa_roxburghii	Rroxscaffold_3G00249590
rosa_rugosa	Rorug07G0110800
rosa_samantha	Rh7AG244700 Rh7BG240000 Rh7CG260300 Rh7DG251600
rosa_wichuraiana	Rw7G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	702
AccII	CGCG	2 cut(s)	178, 447
AciI	CCGC	5 cut(s)	178, 274, 277, 337, 447
AclWI	GGATC	1 cut(s)	486
AcoI	YGGCCR	2 cut(s)	188, 290
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	2 cut(s)	334, 347
AfaI	GTAC	4 cut(s)	116, 485, 550, 564
AfiI	CCNNNNNNNGG	1 cut(s)	595
AflIII	ACRYGT	1 cut(s)	565
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	5 cut(s)	8, 622, 674, 713, 746
AhlI	ACTAGT	1 cut(s)	551
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	486
AlwNI	CAGNNNCTG	1 cut(s)	129
AoxI	GGCC	2 cut(s)	188, 290
ApoI	RAATTY	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
AsiGI	ACCGGT	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	123, 336
AspS9I	GGNCC	4 cut(s)	83, 220, 454, 737
AsuC2I	CCSGG	2 cut(s)	87, 187
AsuHPI	GGTGA	4 cut(s)	25, 87, 127, 418
AvaII	GGWCC	4 cut(s)	83, 220, 454, 737
AxyI	CCTNAGG	1 cut(s)	594
BanI	GGYRCC	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	360
BarI	GAAGNNNNNNTAC	2 cut(s)	693, 725
BauI	CACGAG	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	501
BccI	CCATC	2 cut(s)	211, 667
BcnI	CCSGG	2 cut(s)	87, 187
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	2 cut(s)	552, 602
BfoI	RGCGCY	1 cut(s)	337
BisI	GCNGC	4 cut(s)	179, 277, 337, 448
BlsI	GCNGC	4 cut(s)	180, 278, 338, 449
Bme1390I	CCNGG	2 cut(s)	87, 187
Bme18I	GGWCC	4 cut(s)	83, 220, 454, 737
BmgT120I	GGNCC	4 cut(s)	83, 220, 454, 737
BmiI	GGNNCC	3 cut(s)	85, 335, 738
BmrFI	CCNGG	2 cut(s)	87, 187
BmsI	GCATC	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	501
BpuMI	CCSGG	2 cut(s)	87, 187
BsaAI	YACGTR	1 cut(s)	566
BsaHI	GRCGYC	2 cut(s)	334, 347
BsaWI	WCCGGW	2 cut(s)	10, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse118I	RCCGGY	3 cut(s)	10, 111, 534
Bse1I	ACTGG	1 cut(s)	710
Bse21I	CCTNAGG	1 cut(s)	594
BseGI	GGATG	1 cut(s)	700
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMII	CTCAG	2 cut(s)	492, 608
BseNI	ACTGG	1 cut(s)	710
Bsh1236I	CGCG	2 cut(s)	178, 447
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	2 cut(s)	190, 292
BshNI	GGYRCC	1 cut(s)	333
BshTI	ACCGGT	1 cut(s)	10
BsiEI	CGRYCG	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	6 cut(s)	11, 87, 112, 187, 259, 535
BslFI	GGGAC	2 cut(s)	69, 395
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmFI	GGGAC	2 cut(s)	69, 395
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	190, 292
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	478, 667
BspACI	CCGC	5 cut(s)	178, 274, 277, 337, 447
BspANI	GGCC	2 cut(s)	190, 292
BspCNI	CTCAG	2 cut(s)	493, 607
BspFNI	CGCG	2 cut(s)	178, 447
BspLI	GGNNCC	3 cut(s)	85, 335, 738
BspPI	GGATC	1 cut(s)	486
BspT107I	GGYRCC	1 cut(s)	333
BsrFI	RCCGGY	3 cut(s)	10, 111, 534
BsrI	ACTGG	1 cut(s)	710
BssAI	RCCGGY	3 cut(s)	10, 111, 534
BssMI	GATC	2 cut(s)	478, 667
BssNAI	GTATAC	1 cut(s)	703
BssNI	GRCGYC	2 cut(s)	334, 347
BssSI	CACGAG	1 cut(s)	458
Bst1107I	GTATAC	1 cut(s)	703
Bst2BI	CACGAG	1 cut(s)	458
Bst4CI	ACNGT	4 cut(s)	83, 307, 430, 542
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	2 cut(s)	334, 347
BstAPI	GCANNNNNTGC	2 cut(s)	129, 243
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	3 cut(s)	125, 532, 536
BstDEI	CTNAG	2 cut(s)	501, 594
BstF5I	GGATG	1 cut(s)	700
BstFNI	CGCG	2 cut(s)	178, 447
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	2 cut(s)	123, 336
BstKTI	GATC	2 cut(s)	481, 670
BstMBI	GATC	2 cut(s)	478, 667
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 187, 243, 364
BstSCI	CCNGG	2 cut(s)	85, 185
BstUI	CGCG	2 cut(s)	178, 447
BstZ17I	GTATAC	1 cut(s)	703
Bsu36I	CCTNAGG	1 cut(s)	594
BsuRI	GGCC	2 cut(s)	190, 292
BtsCI	GGATG	1 cut(s)	700
BtsI	GCAGTG	2 cut(s)	127, 495
BtsIMutI	CAGTG	2 cut(s)	127, 495
Cac8I	GCNNGC	3 cut(s)	125, 532, 536
CaiI	CAGNNNCTG	1 cut(s)	129
CfoI	GCGC	2 cut(s)	123, 336
Cfr10I	RCCGGY	3 cut(s)	10, 111, 534
Cfr13I	GGNCC	4 cut(s)	83, 220, 454, 737
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	4 cut(s)	115, 484, 549, 563
CspAI	ACCGGT	1 cut(s)	10
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	8 cut(s)	111, 190, 265, 292, 358, 592, 614, 709
CviKI_1	RGCY	8 cut(s)	111, 190, 265, 292, 358, 592, 614, 709
CviQI	GTAC	4 cut(s)	115, 484, 549, 563
DdeI	CTNAG	2 cut(s)	501, 594
DinI	GGCGCC	1 cut(s)	335
DpnI	GATC	2 cut(s)	480, 669
DpnII	GATC	2 cut(s)	478, 667
EaeI	YGGCCR	2 cut(s)	188, 290
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
EciI	GGCGGA	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	4 cut(s)	83, 220, 454, 737
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	763
EcoT38I	GRGCYC	1 cut(s)	360
EgeI	GGCGCC	1 cut(s)	335
EheI	GGCGCC	1 cut(s)	335
FaeI	CATG	1 cut(s)	105
FaiI	YATR	6 cut(s)	58, 103, 488, 636, 703, 759
FaqI	GGGAC	2 cut(s)	69, 395
FatI	CATG	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	4 cut(s)	179, 277, 337, 448
FokI	GGATG	1 cut(s)	707
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	4 cut(s)	179, 277, 337, 448
FspBI	CTAG	2 cut(s)	552, 602
GlaI	GCGC	2 cut(s)	122, 335
GluI	GCNGC	4 cut(s)	179, 277, 337, 448
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	2 cut(s)	190, 292
HapII	CCGG	6 cut(s)	11, 87, 112, 187, 259, 535
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	2 cut(s)	123, 336
Hin1I	GRCGYC	2 cut(s)	334, 347
Hin1II	CATG	1 cut(s)	105
Hin6I	GCGC	2 cut(s)	121, 334
HinP1I	GCGC	2 cut(s)	121, 334
HinfI	GANTC	3 cut(s)	16, 282, 398
HpaII	CCGG	6 cut(s)	11, 87, 112, 187, 259, 535
HphI	GGTGA	4 cut(s)	25, 87, 127, 418
Hpy166II	GTNNAC	4 cut(s)	379, 433, 457, 703
Hpy188I	TCNGA	4 cut(s)	63, 216, 355, 667
Hpy188III	TCNNGA	5 cut(s)	412, 473, 576, 671, 718
Hpy8I	GTNNAC	4 cut(s)	379, 433, 457, 703
Hpy99I	CGWCG	4 cut(s)	349, 352, 355, 418
HpyCH4III	ACNGT	4 cut(s)	83, 307, 430, 542
HpyCH4IV	ACGT	2 cut(s)	347, 565
HpyCH4V	TGCA	7 cut(s)	132, 237, 246, 493, 638, 731, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 187, 243, 364
HpyF3I	CTNAG	2 cut(s)	501, 594
HpySE526I	ACGT	2 cut(s)	347, 565
Hsp92I	GRCGYC	2 cut(s)	334, 347
Hsp92II	CATG	1 cut(s)	105
HspAI	GCGC	2 cut(s)	121, 334
KasI	GGCGCC	1 cut(s)	333
KroI	GCCGGC	1 cut(s)	534
KroNI	GCCGGC	1 cut(s)	536
Kzo9I	GATC	2 cut(s)	478, 667
LmnI	GCTCC	3 cut(s)	276, 355, 363
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	2 cut(s)	552, 602
MaeII	ACGT	2 cut(s)	347, 565
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	2 cut(s)	480, 669
MboI	GATC	2 cut(s)	478, 667
MboII	GAAGA	4 cut(s)	146, 149, 457, 512
MfeI	CAATTG	1 cut(s)	741
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	5 cut(s)	25, 197, 617, 713, 741
Mly113I	GGCGCC	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	3 cut(s)	102, 197, 333
MnlI	CCTC	7 cut(s)	174, 261, 469, 496, 603, 685, 691
Mph1103I	ATGCAT	1 cut(s)	763
MroNI	GCCGGC	1 cut(s)	534
MseI	TTAA	2 cut(s)	107, 585
MslI	CAYNNNNRTG	1 cut(s)	100
MspI	CCGG	6 cut(s)	11, 87, 112, 187, 259, 535
MspR9I	CCNGG	2 cut(s)	87, 187
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	1 cut(s)	246
MvnI	CGCG	2 cut(s)	178, 447
MwoI	GCNNNNNNNGC	4 cut(s)	129, 187, 243, 364
NaeI	GCCGGC	1 cut(s)	536
NarI	GGCGCC	1 cut(s)	334
NciI	CCSGG	2 cut(s)	87, 187
NdeII	GATC	2 cut(s)	478, 667
NgoMIV	GCCGGC	1 cut(s)	534
NlaIII	CATG	1 cut(s)	105
NlaIV	GGNNCC	3 cut(s)	85, 335, 738
NmuCI	GTSAC	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	763
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PctI	GAATGC	1 cut(s)	246
PdiI	GCCGGC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	16, 282
PflFI	GACNNNGTC	1 cut(s)	349
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	4 cut(s)	180, 278, 338, 449
PleI	GAGTC	1 cut(s)	392
PluTI	GGCGCC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	392
Ppu21I	YACGTR	1 cut(s)	566
Psp124BI	GAGCTC	1 cut(s)	360
PspN4I	GGNNCC	3 cut(s)	85, 335, 738
PspPI	GGNCC	4 cut(s)	83, 220, 454, 737
PstNI	CAGNNNCTG	1 cut(s)	129
PsyI	GACNNNGTC	1 cut(s)	349
RsaI	GTAC	4 cut(s)	116, 485, 550, 564
RsaNI	GTAC	4 cut(s)	115, 484, 549, 563
RseI	CAYNNNNRTG	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	107, 585
SatI	GCNGC	4 cut(s)	179, 277, 337, 448
Sau3AI	GATC	2 cut(s)	478, 667
Sau96I	GGNCC	4 cut(s)	83, 220, 454, 737
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	2 cut(s)	87, 187
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	5 cut(s)	57, 350, 360, 568, 702
SfaNI	GCATC	1 cut(s)	141
SfoI	GGCGCC	1 cut(s)	335
SinI	GGWCC	4 cut(s)	83, 220, 454, 737
SmiMI	CAYNNNNRTG	1 cut(s)	100
SpeI	ACTAGT	1 cut(s)	551
Sse9I	AATT	5 cut(s)	25, 197, 617, 713, 741
SsiI	CCGC	5 cut(s)	178, 274, 277, 337, 447
SspDI	GGCGCC	1 cut(s)	333
SspMI	CTAG	2 cut(s)	552, 602
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	85, 185
TaaI	ACNGT	4 cut(s)	83, 307, 430, 542
TaiI	ACGT	2 cut(s)	350, 568
TaqII	GACCGA	1 cut(s)	399
TasI	AATT	5 cut(s)	25, 197, 617, 713, 741
TatI	WGTACW	2 cut(s)	483, 548
TauI	GCSGC	4 cut(s)	181, 279, 339, 450
TfiI	GAWTC	2 cut(s)	16, 282
Tru1I	TTAA	2 cut(s)	107, 585
Tru9I	TTAA	2 cut(s)	107, 585
TscAI	CASTG	2 cut(s)	134, 502
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	134, 502
Tth111I	GACNNNGTC	1 cut(s)	349
VpaK11BI	GGWCC	4 cut(s)	83, 220, 454, 737
XapI	RAATTY	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	2 cut(s)	552, 602
ZraI	GACGTC	1 cut(s)	348
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.