Rroxscaffold_3G00249590

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009435
Physical Location & Seq
Forward (+)
43360160 .. 43362842
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249590.1

Sequence Viewer

Length: 579 bp
ATGGACCACGCCATTCCCTGCAACCCCTGCATTCCTCTCTTCCGGAAACCCACGCTCCGCAGCCGAGTCACTTGGCCGACCAGCACCACCGTTCGCCACTCCAATACAACAAAATGGCGCCGCAATACGACGTCGTCGGAGCTCCAAATGCCGGTGGAAGTAAACGACCGAACGAGTAGCGACTCTGCTTCAGTCCCGACGCACAAAGTCACCGTCCACGACAGACAACGCGGCGTCGTACACGAGTTCTTCGTCCCGGAGGATCAGTACATATTGCACACTGCTGAGGCACAGAACATCACTCTTCCATTCGCTTGCCGGCACGGTTGTTGTACTAGTTGTGCTGTACGTGTGAAGTCTGGAAAACTTAACCAGCCTCAGGCACTAGGGATATCTGCTGAATTGAAATCAAAGGCATGTGGATATGCACTTCTCTGTGTGGGTTTTCCATCATCTGATCTTGAAGTAGAAACACAAGATGAGGATGAGGTATACTGGCTTCAATTCGGGAGATATTTTGCACGGGGTCCAATTGAAAGAGATGATTATGCATTGGAGTTGGCATTGGGTGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

192

Amino Acids

21.6

Weight (kDa)

6.16

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 80 - 148 1.4e-12 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 492
AccII CGCG 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 42
AciI CCGC 3 cut(s) 58, 121, 231
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 174
AcyI GRCGYC 3 cut(s) 118, 131, 234
AfaI GTAC 4 cut(s) 240, 269, 334, 348
AfiI CCNNNNNNNGG 2 cut(s) 151, 379
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 4 cut(s) 406, 464, 503, 536
AhlI ACTAGT 1 cut(s) 335
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw21I GWGCWC 1 cut(s) 144
AlwI GGATC 1 cut(s) 270
Aor13HI TCCGGA 1 cut(s) 42
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 60
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 4, 527
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 2 cut(s) 4, 527
AxyI CCTNAGG 1 cut(s) 378
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 144
BarI GAAGNNNNNNTAC 2 cut(s) 483, 515
BauI CACGAG 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 72
BccI CCATC 1 cut(s) 457
BcnI CCSGG 1 cut(s) 257
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 2 cut(s) 336, 386
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 3 cut(s) 61, 121, 232
BlsI GCNGC 3 cut(s) 62, 122, 233
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 2 cut(s) 4, 527
BmgT120I GGNCC 2 cut(s) 4, 527
BmiI GGNNCC 2 cut(s) 119, 528
BmrFI CCNGG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 350
BsaHI GRCGYC 3 cut(s) 118, 131, 234
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 379
Bse118I RCCGGY 2 cut(s) 151, 318
Bse1I ACTGG 1 cut(s) 500
Bse21I CCTNAGG 1 cut(s) 378
BseAI TCCGGA 1 cut(s) 42
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 151, 379
BseMII CTCAG 2 cut(s) 276, 392
BseNI ACTGG 1 cut(s) 500
BseXI GCAGC 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 4 cut(s) 43, 152, 257, 319
BslFI GGGAC 2 cut(s) 179, 239
BslI CCNNNNNNNGG 2 cut(s) 151, 379
BsmFI GGGAC 2 cut(s) 179, 239
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 262, 457
BspACI CCGC 3 cut(s) 58, 121, 231
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 2 cut(s) 277, 391
BspEI TCCGGA 1 cut(s) 42
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 119, 528
BspPI GGATC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 117
BsrFI RCCGGY 2 cut(s) 151, 318
BsrI ACTGG 1 cut(s) 500
BssAI RCCGGY 2 cut(s) 151, 318
BssMI GATC 2 cut(s) 262, 457
BssNAI GTATAC 1 cut(s) 493
BssNI GRCGYC 3 cut(s) 118, 131, 234
BssSI CACGAG 1 cut(s) 242
Bst1107I GTATAC 1 cut(s) 493
Bst2BI CACGAG 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 91, 214, 326
Bst6I CTCTTC 2 cut(s) 44, 309
BstACI GRCGYC 3 cut(s) 118, 131, 234
BstAPI GCANNNNNTGC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 316, 320
BstDEI CTNAG 2 cut(s) 285, 378
BstF5I GGATG 1 cut(s) 490
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 265, 460
BstMBI GATC 2 cut(s) 262, 457
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 27, 148
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 255
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 72
BstZ17I GTATAC 1 cut(s) 493
Bsu36I CCTNAGG 1 cut(s) 378
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 490
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 316, 320
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 2 cut(s) 151, 318
Cfr13I GGNCC 2 cut(s) 4, 527
CseI GACGC 2 cut(s) 208, 223
Csp6I GTAC 4 cut(s) 239, 268, 333, 347
CviAII CATG 1 cut(s) 417
CviJI RGCY 5 cut(s) 63, 76, 142, 376, 499
CviKI_1 RGCY 5 cut(s) 63, 76, 142, 376, 499
CviQI GTAC 4 cut(s) 239, 268, 333, 347
DdeI CTNAG 2 cut(s) 285, 378
DinI GGCGCC 1 cut(s) 119
DpnI GATC 2 cut(s) 264, 459
DpnII GATC 2 cut(s) 262, 457
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 44, 309
EarI CTCTTC 2 cut(s) 44, 309
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 144
Eco32I GATATC 1 cut(s) 393
Eco47I GGWCC 2 cut(s) 4, 527
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 174
Eco81I CCTNAGG 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 142
EcoRV GATATC 1 cut(s) 393
EcoT22I ATGCAT 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 119
EheI GGCGCC 1 cut(s) 119
FaeI CATG 1 cut(s) 420
FaiI YATR 5 cut(s) 272, 418, 426, 493, 549
FaqI GGGAC 2 cut(s) 179, 239
FatI CATG 1 cut(s) 416
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 3 cut(s) 61, 121, 232
FokI GGATG 1 cut(s) 497
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 3 cut(s) 61, 121, 232
FspBI CTAG 2 cut(s) 336, 386
GlaI GCGC 1 cut(s) 119
GluI GCNGC 3 cut(s) 61, 121, 232
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 76
HapII CCGG 4 cut(s) 43, 152, 257, 319
HgaI GACGC 2 cut(s) 208, 223
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 3 cut(s) 118, 131, 234
Hin1II CATG 1 cut(s) 420
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 2 cut(s) 66, 182
HpaII CCGG 4 cut(s) 43, 152, 257, 319
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 4 cut(s) 163, 217, 241, 493
Hpy188I TCNGA 2 cut(s) 139, 457
Hpy188III TCNNGA 5 cut(s) 43, 196, 360, 461, 508
Hpy8I GTNNAC 4 cut(s) 163, 217, 241, 493
Hpy99I CGWCG 5 cut(s) 133, 136, 139, 202, 239
HpyCH4III ACNGT 3 cut(s) 91, 214, 326
HpyCH4IV ACGT 2 cut(s) 131, 349
HpyCH4V TGCA 6 cut(s) 21, 30, 277, 428, 521, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 148
HpyF3I CTNAG 2 cut(s) 285, 378
HpySE526I ACGT 2 cut(s) 131, 349
Hsp92I GRCGYC 3 cut(s) 118, 131, 234
Hsp92II CATG 1 cut(s) 420
HspAI GCGC 1 cut(s) 118
KasI GGCGCC 1 cut(s) 117
Kpn2I TCCGGA 1 cut(s) 42
KroI GCCGGC 1 cut(s) 318
KroNI GCCGGC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 262, 457
LmnI GCTCC 3 cut(s) 60, 139, 147
Lsp1109I GCAGC 1 cut(s) 72
MaeI CTAG 2 cut(s) 336, 386
MaeII ACGT 2 cut(s) 131, 349
MaeIII GTNAC 2 cut(s) 67, 208
MalI GATC 2 cut(s) 264, 459
MboI GATC 2 cut(s) 262, 457
MboII GAAGA 3 cut(s) 31, 241, 296
MfeI CAATTG 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 3 cut(s) 401, 503, 531
Mly113I GGCGCC 1 cut(s) 118
MlyI GAGTC 2 cut(s) 75, 176
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 6 cut(s) 45, 253, 280, 387, 475, 481
Mph1103I ATGCAT 1 cut(s) 553
MroI TCCGGA 1 cut(s) 42
MroNI GCCGGC 1 cut(s) 318
MseI TTAA 1 cut(s) 369
MspI CCGG 4 cut(s) 43, 152, 257, 319
MspR9I CCNGG 1 cut(s) 257
MunI CAATTG 1 cut(s) 531
Mva1269I GAATGC 1 cut(s) 30
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 27, 148
NaeI GCCGGC 1 cut(s) 320
NarI GGCGCC 1 cut(s) 118
NciI CCSGG 1 cut(s) 257
NdeII GATC 2 cut(s) 262, 457
NgoMIV GCCGGC 1 cut(s) 318
NlaIII CATG 1 cut(s) 420
NlaIV GGNNCC 2 cut(s) 119, 528
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 2 cut(s) 67, 208
NsiI ATGCAT 1 cut(s) 553
NspI RCATGY 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 320
PflFI GACNNNGTC 1 cut(s) 133
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 3 cut(s) 62, 122, 233
PleI GAGTC 2 cut(s) 74, 176
PluTI GGCGCC 1 cut(s) 121
PpsI GAGTC 2 cut(s) 74, 176
Ppu21I YACGTR 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 119, 528
PspPI GGNCC 2 cut(s) 4, 527
PsyI GACNNNGTC 1 cut(s) 133
RsaI GTAC 4 cut(s) 240, 269, 334, 348
RsaNI GTAC 4 cut(s) 239, 268, 333, 347
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 61, 121, 232
Sau3AI GATC 2 cut(s) 262, 457
Sau96I GGNCC 2 cut(s) 4, 527
SchI GAGTC 2 cut(s) 75, 176
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 1 cut(s) 144
SetI ASST 4 cut(s) 134, 144, 352, 492
SfoI GGCGCC 1 cut(s) 119
SinI GGWCC 2 cut(s) 4, 527
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 3 cut(s) 401, 503, 531
SsiI CCGC 3 cut(s) 58, 121, 231
SspDI GGCGCC 1 cut(s) 117
SspMI CTAG 2 cut(s) 336, 386
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 255
TaaI ACNGT 3 cut(s) 91, 214, 326
TaiI ACGT 2 cut(s) 134, 352
TaqII GACCGA 1 cut(s) 183
TasI AATT 3 cut(s) 401, 503, 531
TatI WGTACW 2 cut(s) 267, 332
TauI GCSGC 2 cut(s) 123, 234
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 2 cut(s) 67, 208
TseI GCWGC 1 cut(s) 60
Tsp45I GTSAC 2 cut(s) 67, 208
TspRI CASTG 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 4, 527
XceI RCATGY 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 492
XspI CTAG 2 cut(s) 336, 386
ZraI GACGTC 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.