MD06G1032600.v1.1

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0009435
Physical Location & Seq
Reverse (-)
3912831 .. 3915562
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1032600.v1.1.491

Sequence Viewer

Length: 603 bp
ATGGCTTACCCGTCAGCCAGAGTTAGAGTCATGGACCATGCCATTCCCTGCAATCCCTGCATTTCCCTTTCTATCCACCGGAAACCGCCACTCAACCGACAAATCATTTGGCCGAACACCGTCACCCACCACTCCAACATAACCAAATGGCGCCGCAACACGACTTCCGAGCTCCAAACCCAGGTGGCTGTCAACGACCGAACCGGTGACTACTCTCCTTCAGTTCCCACACACACAGTCACAGTTCACGACCGACAACGAGGCGTCTCCCACCAGTTCCTCGTCCCTGAGGACCAGTACATATTGCACACAGCAGAGTCGCAGGATATCACTCTTCCATTCGCTTGCAGGCACGGTTGTTGTACTAGTTGTGCTGTACGCGTAAAATCCGGAGAACTTAGACAGCCTGAGGCACTAGGGATTTCTGCTGAACTGAAATCAAAGGGGTATGCACTTCTCTGTGTGGGCTATCCATCATCTGACCTTGAAGTAGAAACGCAAGACGAGGATGAGGTATATTGGCTTCAATTTGGCAGATATTTTGCCCGGGGACCAATTGATAGAGATGATTATGCATTGGAGTTAGCTATGGGGGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

201

Amino Acids

22.61

Weight (kDa)

5.97

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 87 - 158 8.1e-15 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AccII CGCG 1 cut(s) 381
AccIII TCCGGA 1 cut(s) 389
AciI CCGC 2 cut(s) 86, 154
AcoI YGGCCR 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 204
AcyI GRCGYC 2 cut(s) 151, 264
AfaI GTAC 3 cut(s) 299, 364, 378
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 379
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 2 cut(s) 488, 527
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 172, 587
AluI AGCT 2 cut(s) 172, 587
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 271
Ama87I CYCGRG 1 cut(s) 546
Aor13HI TCCGGA 1 cut(s) 389
AoxI GGCC 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AsiGI ACCGGT 1 cut(s) 203
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 3 cut(s) 34, 292, 551
AsuC2I CCSGG 2 cut(s) 547, 548
AsuHPI GGTGA 2 cut(s) 115, 218
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 3 cut(s) 34, 292, 551
AxyI CCTNAGG 2 cut(s) 288, 408
BanI GGYRCC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 174
BarI GAAGNNNNNNTAC 2 cut(s) 507, 539
Bbv12I GWGCWC 1 cut(s) 174
BccI CCATC 1 cut(s) 481
BciT130I CCWGG 1 cut(s) 182
BcnI CCSGG 2 cut(s) 547, 548
BcoDI GTCTC 1 cut(s) 271
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 2 cut(s) 366, 416
BfoI RGCGCY 1 cut(s) 154
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 3 cut(s) 182, 547, 548
Bme18I GGWCC 3 cut(s) 34, 292, 551
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 3 cut(s) 34, 292, 551
BmiI GGNNCC 2 cut(s) 152, 552
BmrFI CCNGG 3 cut(s) 182, 547, 548
BpuMI CCSGG 2 cut(s) 547, 548
BsaHI GRCGYC 2 cut(s) 151, 264
BsaJI CCNNGG 3 cut(s) 180, 546, 547
BsaWI WCCGGW 3 cut(s) 78, 203, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 274, 295
Bse21I CCTNAGG 2 cut(s) 288, 408
BseAI TCCGGA 1 cut(s) 389
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 3 cut(s) 180, 546, 547
BseGI GGATG 2 cut(s) 514, 601
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 279, 399
BseNI ACTGG 2 cut(s) 274, 295
Bsh1236I CGCG 1 cut(s) 381
Bsh1285I CGRYCG 2 cut(s) 199, 253
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 150
BshTI ACCGGT 1 cut(s) 203
BsiEI CGRYCG 2 cut(s) 199, 253
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 4 cut(s) 79, 204, 390, 547
BslFI GGGAC 2 cut(s) 269, 564
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 271
BsmBI CGTCTC 1 cut(s) 271
BsmFI GGGAC 2 cut(s) 269, 564
BsnI GGCC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 174
Bsp13I TCCGGA 1 cut(s) 389
BspACI CCGC 2 cut(s) 86, 154
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 2 cut(s) 280, 400
BspEI TCCGGA 1 cut(s) 389
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 152, 552
BspT107I GGYRCC 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 2 cut(s) 274, 295
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 180, 546, 547
BssNI GRCGYC 2 cut(s) 151, 264
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 4 cut(s) 121, 238, 244, 356
Bst6I CTCTTC 1 cut(s) 339
BstACI GRCGYC 2 cut(s) 151, 264
BstAPI GCANNNNNTGC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 346, 350
BstDEI CTNAG 3 cut(s) 288, 398, 408
BstF5I GGATG 2 cut(s) 514, 601
BstFNI CGCG 1 cut(s) 381
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 271
BstMCI CGRYCG 2 cut(s) 199, 253
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 180, 545, 546
BstUI CGCG 1 cut(s) 381
Bsu36I CCTNAGG 2 cut(s) 288, 408
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 514, 601
Cac8I GCNNGC 2 cut(s) 346, 350
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 34, 292, 551
Cfr9I CCCGGG 1 cut(s) 546
CseI GACGC 1 cut(s) 253
Csp6I GTAC 3 cut(s) 298, 363, 377
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 2 cut(s) 31, 38
CviJI RGCY 9 cut(s) 5, 17, 112, 172, 188, 406, 468, 523, 587
CviKI_1 RGCY 9 cut(s) 5, 17, 112, 172, 188, 406, 468, 523, 587
CviQI GTAC 3 cut(s) 298, 363, 377
DdeI CTNAG 3 cut(s) 288, 398, 408
DinI GGCGCC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 328
Eco47I GGWCC 3 cut(s) 34, 292, 551
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 204
Eco81I CCTNAGG 2 cut(s) 288, 408
Eco88I CYCGRG 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 180
EcoRV GATATC 1 cut(s) 328
EcoT22I ATGCAT 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 174
EgeI GGCGCC 1 cut(s) 152
EheI GGCGCC 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 2 cut(s) 34, 41
FaiI YATR 8 cut(s) 32, 39, 140, 302, 450, 517, 573, 590
FaqI GGGAC 2 cut(s) 269, 564
FatI CATG 2 cut(s) 30, 37
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 2 cut(s) 366, 416
GlaI GCGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 154
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 1 cut(s) 112
HapII CCGG 4 cut(s) 79, 204, 390, 547
HgaI GACGC 1 cut(s) 253
HhaI GCGC 1 cut(s) 153
Hin1I GRCGYC 2 cut(s) 151, 264
Hin1II CATG 2 cut(s) 34, 41
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 27, 317
HpaII CCGG 4 cut(s) 79, 204, 390, 547
HphI GGTGA 2 cut(s) 115, 218
Hpy166II GTNNAC 2 cut(s) 193, 247
Hpy188I TCNGA 2 cut(s) 169, 481
Hpy188III TCNNGA 2 cut(s) 248, 390
Hpy8I GTNNAC 2 cut(s) 193, 247
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 4 cut(s) 121, 238, 244, 356
HpyCH4V TGCA 6 cut(s) 51, 60, 307, 348, 452, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 3 cut(s) 288, 398, 408
Hsp92I GRCGYC 2 cut(s) 151, 264
Hsp92II CATG 2 cut(s) 34, 41
HspAI GCGC 1 cut(s) 151
KasI GGCGCC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 389
LmnI GCTCC 1 cut(s) 177
MaeI CTAG 2 cut(s) 366, 416
MaeIII GTNAC 3 cut(s) 121, 206, 238
MboII GAAGA 1 cut(s) 326
MfeI CAATTG 1 cut(s) 555
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 2 cut(s) 527, 555
MluI ACGCGT 1 cut(s) 379
Mly113I GGCGCC 1 cut(s) 151
MlyI GAGTC 2 cut(s) 36, 326
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 6 cut(s) 254, 283, 290, 403, 499, 505
Mph1103I ATGCAT 1 cut(s) 577
MroI TCCGGA 1 cut(s) 389
MspI CCGG 4 cut(s) 79, 204, 390, 547
MspR9I CCNGG 3 cut(s) 182, 547, 548
MunI CAATTG 1 cut(s) 555
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 57
NarI GGCGCC 1 cut(s) 151
NciI CCSGG 2 cut(s) 547, 548
NlaIII CATG 2 cut(s) 34, 41
NlaIV GGNNCC 2 cut(s) 152, 552
NmuCI GTSAC 3 cut(s) 121, 206, 238
NsiI ATGCAT 1 cut(s) 577
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 2 cut(s) 35, 325
PluTI GGCGCC 1 cut(s) 154
PpsI GAGTC 2 cut(s) 35, 325
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 152, 552
PspPI GGNCC 3 cut(s) 34, 292, 551
RsaI GTAC 3 cut(s) 299, 364, 378
RsaNI GTAC 3 cut(s) 298, 363, 377
SacI GAGCTC 1 cut(s) 174
SatI GCNGC 1 cut(s) 154
Sau96I GGNCC 3 cut(s) 34, 292, 551
SchI GAGTC 2 cut(s) 36, 326
ScrFI CCNGG 3 cut(s) 182, 547, 548
SduI GDGCHC 1 cut(s) 174
SetI ASST 5 cut(s) 174, 186, 486, 516, 589
SfoI GGCGCC 1 cut(s) 152
SinI GGWCC 3 cut(s) 34, 292, 551
SmaI CCCGGG 1 cut(s) 548
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 2 cut(s) 527, 555
SsiI CCGC 2 cut(s) 86, 154
SspDI GGCGCC 1 cut(s) 150
SspMI CTAG 2 cut(s) 366, 416
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 3 cut(s) 180, 545, 546
TaaI ACNGT 4 cut(s) 121, 238, 244, 356
TaqII GACCGA 2 cut(s) 213, 267
TasI AATT 2 cut(s) 527, 555
TatI WGTACW 2 cut(s) 297, 362
TauI GCSGC 1 cut(s) 156
TseFI GTSAC 3 cut(s) 121, 206, 238
Tsp45I GTSAC 3 cut(s) 121, 206, 238
TspMI CCCGGG 1 cut(s) 546
VpaK11BI GGWCC 3 cut(s) 34, 292, 551
XmaI CCCGGG 1 cut(s) 546
XspI CTAG 2 cut(s) 366, 416
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.