Rh7DG251600

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0009435
Physical Location & Seq
Reverse (-)
26129037 .. 26131617
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG251600.1

Sequence Viewer

Length: 492 bp
ATGGACCACGCCATTCCCTGCAACCCCTGCATTCCTCTGTACCGGAAGCCCACGCTCCGCCGCCGAATCACTTGGCCGACCAGCACCACCGTTCGCCGCTCCAATACAACAAAATGGCGCCGCAATACGACGTCGTCGGAGCTCCAAATGCCCGTAGAAGTGAACGACCGAACGAGCAGCGACTCTGCTTCAGTCCCGACGCACAAAGTCACCGTCCACGACAGACAACGCGGCGTGGTCCACGAGTTCTTCGTCCCAGAGGATCAGTACATATTGCACACTGCTGAGGCACAGAACATCAGTCTTCCATTCGCTTGCCGGCACGGTTGTTGTACTAGTTGTGCTGTACGTGTGAAGTCTGGAAAACTTAACCAGCCTCAGGCACTAGGGATATCCGCTGAATTGAAATCAAAGGCATGTATTTTTTTTAGGTTTAGTATGAATTTCGCAATGCCTACTGGTTTCTTTTGTTGTCTGCCTCAGTTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

163

Amino Acids

18.47

Weight (kDa)

9.49

Isoelectric Point (pI)

58.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 80 - 128 4.8e-12 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 117
AccBSI CCGCTC 1 cut(s) 99
AccII CGCG 1 cut(s) 231
AciI CCGC 6 cut(s) 58, 61, 97, 121, 231, 396
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 174
AcyI GRCGYC 2 cut(s) 118, 131
AfaI GTAC 4 cut(s) 41, 269, 334, 348
AfiI CCNNNNNNNGG 1 cut(s) 379
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 1 cut(s) 406
AhlI ACTAGT 1 cut(s) 335
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw21I GWGCWC 1 cut(s) 144
AlwI GGATC 1 cut(s) 270
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 442
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 4, 238
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 2 cut(s) 4, 238
AxyI CCTNAGG 1 cut(s) 378
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 144
BauI CACGAG 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 189
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 2 cut(s) 336, 386
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 5 cut(s) 61, 97, 121, 178, 232
BlsI GCNGC 5 cut(s) 62, 98, 122, 179, 233
Bme18I GGWCC 2 cut(s) 4, 238
BmgT120I GGNCC 2 cut(s) 4, 238
BmiI GGNNCC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 350
BsaHI GRCGYC 2 cut(s) 118, 131
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 463
Bse21I CCTNAGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 2 cut(s) 276, 392
BseNI ACTGG 1 cut(s) 463
BseXI GCAGC 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 2 cut(s) 43, 319
BslFI GGGAC 2 cut(s) 179, 239
BslI CCNNNNNNNGG 1 cut(s) 379
BsmFI GGGAC 2 cut(s) 179, 239
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 6 cut(s) 58, 61, 97, 121, 231, 396
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 2 cut(s) 277, 391
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 119
BspPI GGATC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 1 cut(s) 318
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 2 cut(s) 118, 131
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 91, 214, 326
BstACI GRCGYC 2 cut(s) 118, 131
BstAPI GCANNNNNTGC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 316, 320
BstDEI CTNAG 3 cut(s) 285, 378, 480
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 27, 148
BstNSI RCATGY 1 cut(s) 420
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 296
Bsu36I CCTNAGG 1 cut(s) 378
BsuRI GGCC 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 316, 320
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 4, 238
CseI GACGC 1 cut(s) 208
Csp6I GTAC 4 cut(s) 40, 268, 333, 347
CviAII CATG 1 cut(s) 417
CviJI RGCY 4 cut(s) 49, 76, 142, 376
CviKI_1 RGCY 4 cut(s) 49, 76, 142, 376
CviQI GTAC 4 cut(s) 40, 268, 333, 347
DdeI CTNAG 3 cut(s) 285, 378, 480
DinI GGCGCC 1 cut(s) 119
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 74
EciI GGCGGA 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 144
Eco32I GATATC 1 cut(s) 393
Eco47I GGWCC 2 cut(s) 4, 238
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 174
Eco81I CCTNAGG 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 142
EcoRV GATATC 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 119
EheI GGCGCC 1 cut(s) 119
FaeI CATG 1 cut(s) 420
FaiI YATR 4 cut(s) 272, 418, 440, 490
FaqI GGGAC 2 cut(s) 179, 239
FatI CATG 1 cut(s) 416
Fnu4HI GCNGC 5 cut(s) 61, 97, 121, 178, 232
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 5 cut(s) 61, 97, 121, 178, 232
FspBI CTAG 2 cut(s) 336, 386
GlaI GCGC 1 cut(s) 119
GluI GCNGC 5 cut(s) 61, 97, 121, 178, 232
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 76
HapII CCGG 2 cut(s) 43, 319
HgaI GACGC 1 cut(s) 208
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 2 cut(s) 118, 131
Hin1II CATG 1 cut(s) 420
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 2 cut(s) 66, 182
HpaII CCGG 2 cut(s) 43, 319
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 3 cut(s) 163, 217, 241
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 196, 360
Hpy8I GTNNAC 3 cut(s) 163, 217, 241
Hpy99I CGWCG 4 cut(s) 133, 136, 139, 202
HpyCH4III ACNGT 3 cut(s) 91, 214, 326
HpyCH4IV ACGT 2 cut(s) 131, 349
HpyCH4V TGCA 3 cut(s) 21, 30, 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 148
HpyF3I CTNAG 3 cut(s) 285, 378, 480
HpySE526I ACGT 2 cut(s) 131, 349
Hsp92I GRCGYC 2 cut(s) 118, 131
Hsp92II CATG 1 cut(s) 420
HspAI GCGC 1 cut(s) 118
KasI GGCGCC 1 cut(s) 117
KroI GCCGGC 1 cut(s) 318
KroNI GCCGGC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 4 cut(s) 60, 104, 139, 147
Lsp1109I GCAGC 1 cut(s) 189
MaeI CTAG 2 cut(s) 336, 386
MaeII ACGT 2 cut(s) 131, 349
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 264
MbiI CCGCTC 1 cut(s) 99
MboI GATC 1 cut(s) 262
MboII GAAGA 2 cut(s) 241, 296
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 401, 442
Mly113I GGCGCC 1 cut(s) 118
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 5 cut(s) 45, 253, 280, 387, 489
MroNI GCCGGC 1 cut(s) 318
MseI TTAA 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 2 cut(s) 43, 319
Mva1269I GAATGC 1 cut(s) 30
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 27, 148
NaeI GCCGGC 1 cut(s) 320
NarI GGCGCC 1 cut(s) 118
NdeII GATC 1 cut(s) 262
NgoMIV GCCGGC 1 cut(s) 318
NlaIII CATG 1 cut(s) 420
NlaIV GGNNCC 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 5 cut(s) 62, 98, 122, 179, 233
PleI GAGTC 1 cut(s) 176
PluTI GGCGCC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 2 cut(s) 4, 238
PsyI GACNNNGTC 1 cut(s) 133
RsaI GTAC 4 cut(s) 41, 269, 334, 348
RsaNI GTAC 4 cut(s) 40, 268, 333, 347
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 5 cut(s) 61, 97, 121, 178, 232
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 2 cut(s) 4, 238
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 144
SetI ASST 4 cut(s) 134, 144, 352, 434
SfoI GGCGCC 1 cut(s) 119
SinI GGWCC 2 cut(s) 4, 238
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 2 cut(s) 401, 442
SsiI CCGC 6 cut(s) 58, 61, 97, 121, 231, 396
SspDI GGCGCC 1 cut(s) 117
SspMI CTAG 2 cut(s) 336, 386
SstI GAGCTC 1 cut(s) 144
TaaI ACNGT 3 cut(s) 91, 214, 326
TaiI ACGT 2 cut(s) 134, 352
TaqII GACCGA 1 cut(s) 183
TasI AATT 2 cut(s) 401, 442
TatI WGTACW 2 cut(s) 267, 332
TauI GCSGC 4 cut(s) 63, 99, 123, 234
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 455
TspRI CASTG 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 4, 238
XapI RAATTY 1 cut(s) 442
XceI RCATGY 1 cut(s) 420
XspI CTAG 2 cut(s) 336, 386
ZraI GACGTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.