Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009435

Physical Location & Seq

Genomic Coordinates Reverse (-)

3251725 .. 3253936

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTTACCCGTCAACCAGAGTTAGAGTCATGGACCATGCCATTCCCTGCAATCCCTGCATTTCCCTTTCTATCCACCGGAAACCGCCACTCAACTGCCAAATCACTTGGCCGAACACCGTCACCCACCACTCCAACATAACCAAATGGCGCCGCAACACGACTTCCGAGCTCCAAACTCAGGTGGCTGTCAACGACCGAACCGGTGACTACTCTCCTTCAGTTCCCACACACACAGTCACAGTTCACGACCGACAACGAGGCGTCTCCCACCAGTTCCTCGTCCCTGAGGACCAGTACATATTGCACACAGCAGAGTCGCAGGACATCACTCTTCCATTCGCTTGCAGGCACGGTTGTTGTACTAGTTGTGCTGTACGCGTAAAATCTGGAGAACTTAGACAGCCTGAGGCACTAGGGATTTCTGCTGAACTGAAATCAAAGGGGTATGCACTTCTCTGTGTGGGCTATCCATCATCTGATCTTGAAGTAGAAACGCAAGACGAGGATGAGGTATATTGGCTTCAATTTGGCAGATATTTTGCCCGGGGACCAATTGATAGAGATGATTATGCATTGGAGTTAGCTATGGGGGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Fer2

Protein Analysis

201

Amino Acids

22.58

Weight (kDa)

5.83

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32550 AT1G32550
fragaria_vesca	FvH4_5g21760 FvH4_5g21760 FvH4_5g21760 FvH4_5g21760
malus_domestica	MD06G1032600.v1.1 MD16G1276600.v1.1
prunus_persica	Prupe.5G039500_v2.0.a1 Prupe.5G039500_v2.0.a1
pyrus_communis	pycom06g02700 pycom16g24590
rosa_chinensis	RchiOBHm_Chr7g0209251
rosa_laevigata	RLG00000003153
rosa_multiflora	Rmu_sc0001701.1_g000014
rosa_roxburghii	Rroxscaffold_3G00249590
rosa_rugosa	Rorug07G0110800
rosa_samantha	Rh7AG244700 Rh7BG240000 Rh7CG260300 Rh7DG251600
rosa_wichuraiana	Rw7G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	150
AccII	CGCG	1 cut(s)	381
AciI	CCGC	2 cut(s)	86, 154
AcoI	YGGCCR	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	2 cut(s)	151, 264
AfaI	GTAC	3 cut(s)	299, 364, 378
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	379
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	488, 527
AhlI	ACTAGT	1 cut(s)	365
AluBI	AGCT	2 cut(s)	172, 587
AluI	AGCT	2 cut(s)	172, 587
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	1 cut(s)	110
AsiGI	ACCGGT	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	3 cut(s)	34, 292, 551
AsuC2I	CCSGG	2 cut(s)	547, 548
AsuHPI	GGTGA	2 cut(s)	115, 218
AvaI	CYCGRG	1 cut(s)	546
AvaII	GGWCC	3 cut(s)	34, 292, 551
AxyI	CCTNAGG	2 cut(s)	288, 408
BanI	GGYRCC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	174
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
Bbv12I	GWGCWC	1 cut(s)	174
BccI	CCATC	1 cut(s)	481
BcnI	CCSGG	2 cut(s)	547, 548
BcoDI	GTCTC	1 cut(s)	271
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	2 cut(s)	366, 416
BfoI	RGCGCY	1 cut(s)	154
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	547, 548
Bme18I	GGWCC	3 cut(s)	34, 292, 551
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	3 cut(s)	34, 292, 551
BmiI	GGNNCC	2 cut(s)	152, 552
BmrFI	CCNGG	2 cut(s)	547, 548
BpmI	CTGGAG	1 cut(s)	411
BpuMI	CCSGG	2 cut(s)	547, 548
BsaHI	GRCGYC	2 cut(s)	151, 264
BsaJI	CCNNGG	2 cut(s)	546, 547
BsaWI	WCCGGW	2 cut(s)	78, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	274, 295
Bse21I	CCTNAGG	2 cut(s)	288, 408
BseDI	CCNNGG	2 cut(s)	546, 547
BseGI	GGATG	2 cut(s)	514, 601
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	3 cut(s)	194, 279, 399
BseNI	ACTGG	2 cut(s)	274, 295
Bsh1236I	CGCG	1 cut(s)	381
Bsh1285I	CGRYCG	2 cut(s)	199, 253
BshFI	GGCC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	150
BshTI	ACCGGT	1 cut(s)	203
BsiEI	CGRYCG	2 cut(s)	199, 253
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	3 cut(s)	79, 204, 547
BslFI	GGGAC	2 cut(s)	269, 564
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	271
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	2 cut(s)	269, 564
BsnI	GGCC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	2 cut(s)	86, 154
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	3 cut(s)	193, 280, 400
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	152, 552
BspT107I	GGYRCC	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	274, 295
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	546, 547
BssMI	GATC	1 cut(s)	481
BssNI	GRCGYC	2 cut(s)	151, 264
Bst4CI	ACNGT	4 cut(s)	121, 238, 244, 356
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	2 cut(s)	151, 264
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	346, 350
BstDEI	CTNAG	4 cut(s)	180, 288, 398, 408
BstF5I	GGATG	2 cut(s)	514, 601
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	481
BstMCI	CGRYCG	2 cut(s)	199, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	545, 546
BstUI	CGCG	1 cut(s)	381
Bsu36I	CCTNAGG	2 cut(s)	288, 408
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	514, 601
Cac8I	GCNNGC	2 cut(s)	346, 350
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	34, 292, 551
Cfr9I	CCCGGG	1 cut(s)	546
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	298, 363, 377
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	2 cut(s)	31, 38
CviJI	RGCY	8 cut(s)	5, 112, 172, 188, 406, 468, 523, 587
CviKI_1	RGCY	8 cut(s)	5, 112, 172, 188, 406, 468, 523, 587
CviQI	GTAC	3 cut(s)	298, 363, 377
DdeI	CTNAG	4 cut(s)	180, 288, 398, 408
DinI	GGCGCC	1 cut(s)	152
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	3 cut(s)	34, 292, 551
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	204
Eco81I	CCTNAGG	2 cut(s)	288, 408
Eco88I	CYCGRG	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	174
EgeI	GGCGCC	1 cut(s)	152
EheI	GGCGCC	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	2 cut(s)	34, 41
FaiI	YATR	8 cut(s)	32, 39, 140, 302, 450, 517, 573, 590
FaqI	GGGAC	2 cut(s)	269, 564
FatI	CATG	2 cut(s)	30, 37
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	2 cut(s)	366, 416
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	3 cut(s)	79, 204, 547
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	2 cut(s)	151, 264
Hin1II	CATG	2 cut(s)	34, 41
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	2 cut(s)	15, 193
HindII	GTYRAC	2 cut(s)	15, 193
HinfI	GANTC	2 cut(s)	27, 317
HpaII	CCGG	3 cut(s)	79, 204, 547
HphI	GGTGA	2 cut(s)	115, 218
Hpy166II	GTNNAC	3 cut(s)	15, 193, 247
Hpy188I	TCNGA	2 cut(s)	169, 481
Hpy188III	TCNNGA	3 cut(s)	248, 390, 485
Hpy8I	GTNNAC	3 cut(s)	15, 193, 247
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	4 cut(s)	121, 238, 244, 356
HpyCH4V	TGCA	6 cut(s)	51, 60, 307, 348, 452, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	4 cut(s)	180, 288, 398, 408
Hsp92I	GRCGYC	2 cut(s)	151, 264
Hsp92II	CATG	2 cut(s)	34, 41
HspAI	GCGC	1 cut(s)	151
KasI	GGCGCC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	1 cut(s)	177
MaeI	CTAG	2 cut(s)	366, 416
MaeIII	GTNAC	3 cut(s)	121, 206, 238
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	1 cut(s)	326
MfeI	CAATTG	1 cut(s)	555
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	527, 555
MluI	ACGCGT	1 cut(s)	379
Mly113I	GGCGCC	1 cut(s)	151
MlyI	GAGTC	2 cut(s)	36, 326
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	6 cut(s)	254, 283, 290, 403, 499, 505
Mph1103I	ATGCAT	1 cut(s)	577
MspI	CCGG	3 cut(s)	79, 204, 547
MspR9I	CCNGG	2 cut(s)	547, 548
MunI	CAATTG	1 cut(s)	555
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	57
NarI	GGCGCC	1 cut(s)	151
NciI	CCSGG	2 cut(s)	547, 548
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	2 cut(s)	34, 41
NlaIV	GGNNCC	2 cut(s)	152, 552
NmuCI	GTSAC	3 cut(s)	121, 206, 238
NsiI	ATGCAT	1 cut(s)	577
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	2 cut(s)	35, 325
PluTI	GGCGCC	1 cut(s)	154
PpsI	GAGTC	2 cut(s)	35, 325
Psp124BI	GAGCTC	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	152, 552
PspPI	GGNCC	3 cut(s)	34, 292, 551
RsaI	GTAC	3 cut(s)	299, 364, 378
RsaNI	GTAC	3 cut(s)	298, 363, 377
SacI	GAGCTC	1 cut(s)	174
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	3 cut(s)	34, 292, 551
SchI	GAGTC	2 cut(s)	36, 326
ScrFI	CCNGG	2 cut(s)	547, 548
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	4 cut(s)	174, 186, 516, 589
SfoI	GGCGCC	1 cut(s)	152
SinI	GGWCC	3 cut(s)	34, 292, 551
SmaI	CCCGGG	1 cut(s)	548
SpeI	ACTAGT	1 cut(s)	365
Sse9I	AATT	2 cut(s)	527, 555
SsiI	CCGC	2 cut(s)	86, 154
SspDI	GGCGCC	1 cut(s)	150
SspMI	CTAG	2 cut(s)	366, 416
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	545, 546
TaaI	ACNGT	4 cut(s)	121, 238, 244, 356
TaqII	GACCGA	2 cut(s)	213, 267
TasI	AATT	2 cut(s)	527, 555
TatI	WGTACW	2 cut(s)	297, 362
TauI	GCSGC	1 cut(s)	156
TseFI	GTSAC	3 cut(s)	121, 206, 238
Tsp45I	GTSAC	3 cut(s)	121, 206, 238
TspMI	CCCGGG	1 cut(s)	546
VpaK11BI	GGWCC	3 cut(s)	34, 292, 551
XmaI	CCCGGG	1 cut(s)	546
XspI	CTAG	2 cut(s)	366, 416
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.