Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009435

Physical Location & Seq

Genomic Coordinates Forward (+)

26170904 .. 26172241

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g24590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTGTCAACCAGAATTAGTGTCATGGACCATGCCATTCCCTGCAATCCCTGCGTTTCCCTTTCTATCCACCGGAAACCGCCACTCTACCGCCAAATCACTTGGCCAAACACCGTCACCCACCACTCCAACATAACCAAATGGCGCCGCAACACGATTTCCGAGCTCCAAACTCCGGTGGTTGTCACCGACCGAACCGGTGACTACTCTCCTTCAGTTCCCACACACAAAGTCACCGTTCACGACAGACAACGAGGAGTCTCCCACCAGTTCCTCGTCCCCGAGGACCAGTACATATTGCACACAGCAGAGTCGCAGGACATCACGCTTCCATTCGCTTGCAGGCACGGTTGTTGTACTAGTTGTGCGGTACGTGTAAAATCTGGAGAACTTAGACAGCCTGAGGCACTAGGAATTTCTACCGAACTGAAATCAAAGGGCTATGCACTTCTCTGTGTGGGTTATCCATCATCTGATCGATTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Fer2

Protein Analysis

163

Amino Acids

18.2

Weight (kDa)

9.06

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32550 AT1G32550
fragaria_vesca	FvH4_5g21760 FvH4_5g21760 FvH4_5g21760 FvH4_5g21760
malus_domestica	MD06G1032600.v1.1 MD16G1276600.v1.1
prunus_persica	Prupe.5G039500_v2.0.a1 Prupe.5G039500_v2.0.a1
pyrus_communis	pycom06g02700 pycom16g24590
rosa_chinensis	RchiOBHm_Chr7g0209251
rosa_laevigata	RLG00000003153
rosa_multiflora	Rmu_sc0001701.1_g000014
rosa_roxburghii	Rroxscaffold_3G00249590
rosa_rugosa	Rorug07G0110800
rosa_samantha	Rh7AG244700 Rh7BG240000 Rh7CG260300 Rh7DG251600
rosa_wichuraiana	Rw7G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	144
AciI	CCGC	4 cut(s)	80, 91, 148, 368
AcoI	YGGCCR	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	145
AfaI	GTAC	3 cut(s)	293, 358, 372
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	373
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	484
AhlI	ACTAGT	1 cut(s)	359
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	265
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	414
AsiGI	ACCGGT	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	28, 286
AsuHPI	GGTGA	4 cut(s)	109, 178, 212, 226
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	2 cut(s)	28, 286
AxyI	CCTNAGG	1 cut(s)	402
BalI	TGGCCA	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	265
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	2 cut(s)	360, 410
BfoI	RGCGCY	1 cut(s)	148
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme18I	GGWCC	2 cut(s)	28, 286
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	28, 286
BmiI	GGNNCC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	405
Bsa29I	ATCGAT	1 cut(s)	478
BsaAI	YACGTR	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	3 cut(s)	72, 175, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	268, 289
Bse21I	CCTNAGG	1 cut(s)	402
BseCI	ATCGAT	1 cut(s)	478
BseDI	CCNNGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	268, 289
BseRI	GAGGAG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	106
BshNI	GGYRCC	1 cut(s)	144
BshTI	ACCGGT	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	478
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	3 cut(s)	73, 176, 198
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	475
BspACI	CCGC	4 cut(s)	80, 91, 148, 368
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	268, 289
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	1 cut(s)	475
BssNI	GRCGYC	1 cut(s)	145
Bst4CI	ACNGT	3 cut(s)	115, 238, 350
BstACI	GRCGYC	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	340, 344
BstDEI	CTNAG	2 cut(s)	392, 402
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	475
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	51
Bsu15I	ATCGAT	1 cut(s)	478
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	106
BsuTUI	ATCGAT	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	340, 344
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	28, 286
ClaI	ATCGAT	1 cut(s)	478
Csp6I	GTAC	3 cut(s)	292, 357, 371
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	2 cut(s)	25, 32
CviJI	RGCY	4 cut(s)	106, 166, 400, 441
CviKI_1	RGCY	4 cut(s)	106, 166, 400, 441
CviQI	GTAC	3 cut(s)	292, 357, 371
DdeI	CTNAG	2 cut(s)	392, 402
DinI	GGCGCC	1 cut(s)	146
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	28, 286
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
FaeI	CATG	2 cut(s)	28, 35
FaiI	YATR	5 cut(s)	26, 33, 134, 296, 444
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	2 cut(s)	24, 31
Fnu4HI	GCNGC	1 cut(s)	148
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	2 cut(s)	360, 410
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	405
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	3 cut(s)	73, 176, 198
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	2 cut(s)	28, 35
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	2 cut(s)	258, 311
HpaII	CCGG	3 cut(s)	73, 176, 198
HphI	GGTGA	4 cut(s)	109, 178, 212, 226
Hpy166II	GTNNAC	2 cut(s)	9, 241
Hpy188I	TCNGA	2 cut(s)	163, 475
Hpy188III	TCNNGA	2 cut(s)	242, 384
Hpy8I	GTNNAC	2 cut(s)	9, 241
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	3 cut(s)	115, 238, 350
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	4 cut(s)	45, 301, 342, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	2 cut(s)	392, 402
HpySE526I	ACGT	1 cut(s)	373
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	28, 35
HspAI	GCGC	1 cut(s)	145
KasI	GGCGCC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	360, 410
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	4 cut(s)	115, 184, 200, 232
MalI	GATC	1 cut(s)	477
MboI	GATC	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	106
MluCI	AATT	2 cut(s)	15, 414
MluNI	TGGCCA	1 cut(s)	106
Mly113I	GGCGCC	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	267, 320
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	4 cut(s)	248, 277, 284, 397
Mox20I	TGGCCA	1 cut(s)	106
MscI	TGGCCA	1 cut(s)	106
Msp20I	TGGCCA	1 cut(s)	106
MspI	CCGG	3 cut(s)	73, 176, 198
MwoI	GCNNNNNNNGC	1 cut(s)	51
NarI	GGCGCC	1 cut(s)	145
NdeII	GATC	1 cut(s)	475
NlaIII	CATG	2 cut(s)	28, 35
NlaIV	GGNNCC	1 cut(s)	146
NmuCI	GTSAC	4 cut(s)	115, 184, 200, 232
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	2 cut(s)	266, 319
PluTI	GGCGCC	1 cut(s)	148
PpsI	GAGTC	2 cut(s)	266, 319
Ppu21I	YACGTR	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	2 cut(s)	28, 286
RsaI	GTAC	3 cut(s)	293, 358, 372
RsaNI	GTAC	3 cut(s)	292, 357, 371
SacI	GAGCTC	1 cut(s)	168
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	475
Sau96I	GGNCC	2 cut(s)	28, 286
SchI	GAGTC	2 cut(s)	267, 320
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	2 cut(s)	168, 376
SfoI	GGCGCC	1 cut(s)	146
SinI	GGWCC	2 cut(s)	28, 286
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	2 cut(s)	15, 414
SsiI	CCGC	4 cut(s)	80, 91, 148, 368
SspDI	GGCGCC	1 cut(s)	144
SspMI	CTAG	2 cut(s)	360, 410
SstI	GAGCTC	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	115, 238, 350
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	1 cut(s)	478
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	2 cut(s)	15, 414
TatI	WGTACW	2 cut(s)	291, 356
TauI	GCSGC	1 cut(s)	150
TseFI	GTSAC	4 cut(s)	115, 184, 200, 232
Tsp45I	GTSAC	4 cut(s)	115, 184, 200, 232
VpaK11BI	GGWCC	2 cut(s)	28, 286
XapI	RAATTY	1 cut(s)	414
XspI	CTAG	2 cut(s)	360, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.