RLG00000003153

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009435
Physical Location & Seq
Forward (+)
44965576 .. 44967299
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003153

Sequence Viewer

Length: 510 bp
ATGGACCACGCCATTCCCTGCAACCCCTGCATTCCTCTCTACCGGAAACCCACGCTCCGCCGCCGAATCACTTGGCCGACCAGCACCACCGTTCGCCACTCCAATACAACAAAATGGCGCCGCAATACGACGTCGTCGGAGCTCCAAATGCCCGTGGAAGTAAACGACCGAACGAGTAGCGACTCTGCTTCAGTCCCGACGCACAAAGTCACCGTCCACGACAGACAACGCGGCGTCGTACACGAGTTCTTCGTCCCAGAGGATCAGTACATATTGCACACTGCTGAGGCACAGAACATCACTCTTCCATTCGCTTGCCGGCACGGTTGTTGTACTAGTTGTGCTGTACGTGGATATGCACTTCTCTGTGTGGGTTTTCCATCATCTGATCTTGAAGTAGAAACACAAGATGAGGATGAGGTATACTGGCTTCAATTCGGGAGATATTTTGCACGGGGTCCAATTGAAAGAGATGATTATGCATTGGAGTTGGCATTGGGTGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

170

Amino Acids

19.34

Weight (kDa)

5.79

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 80 - 117 9e-09 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 423
AccII CGCG 1 cut(s) 231
AciI CCGC 4 cut(s) 58, 61, 121, 231
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 174
AcyI GRCGYC 3 cut(s) 118, 131, 234
AfaI GTAC 4 cut(s) 240, 269, 334, 348
AgsI TTSAA 3 cut(s) 395, 434, 467
AhlI ACTAGT 1 cut(s) 335
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw21I GWGCWC 1 cut(s) 144
AlwI GGATC 1 cut(s) 270
AoxI GGCC 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 4, 458
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 2 cut(s) 4, 458
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 144
BarI GAAGNNNNNNTAC 2 cut(s) 414, 446
BauI CACGAG 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 285
BccI CCATC 1 cut(s) 388
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 3 cut(s) 61, 121, 232
BlsI GCNGC 3 cut(s) 62, 122, 233
Bme18I GGWCC 2 cut(s) 4, 458
BmgT120I GGNCC 2 cut(s) 4, 458
BmiI GGNNCC 2 cut(s) 119, 459
Bpu10I CCTNAGC 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 350
BsaHI GRCGYC 3 cut(s) 118, 131, 234
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 431
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 421
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 2 cut(s) 43, 319
BslFI GGGAC 2 cut(s) 179, 239
BsmFI GGGAC 2 cut(s) 179, 239
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 262, 388
BspACI CCGC 4 cut(s) 58, 61, 121, 231
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 119, 459
BspPI GGATC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 1 cut(s) 431
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 262, 388
BssNAI GTATAC 1 cut(s) 424
BssNI GRCGYC 3 cut(s) 118, 131, 234
BssSI CACGAG 1 cut(s) 242
Bst1107I GTATAC 1 cut(s) 424
Bst2BI CACGAG 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 91, 214, 326
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 3 cut(s) 118, 131, 234
BstAPI GCANNNNNTGC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 316, 320
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 265, 391
BstMBI GATC 2 cut(s) 262, 388
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 27, 148
BstUI CGCG 1 cut(s) 231
BstZ17I GTATAC 1 cut(s) 424
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 421
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 316, 320
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 4, 458
CseI GACGC 2 cut(s) 208, 223
Csp6I GTAC 4 cut(s) 239, 268, 333, 347
CviJI RGCY 3 cut(s) 76, 142, 430
CviKI_1 RGCY 3 cut(s) 76, 142, 430
CviQI GTAC 4 cut(s) 239, 268, 333, 347
DdeI CTNAG 1 cut(s) 285
DinI GGCGCC 1 cut(s) 119
DpnI GATC 2 cut(s) 264, 390
DpnII GATC 2 cut(s) 262, 388
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EciI GGCGGA 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 4, 458
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 119
EheI GGCGCC 1 cut(s) 119
FaiI YATR 4 cut(s) 272, 357, 424, 480
FaqI GGGAC 2 cut(s) 179, 239
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 3 cut(s) 61, 121, 232
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 3 cut(s) 61, 121, 232
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 119
GluI GCNGC 3 cut(s) 61, 121, 232
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 76
HapII CCGG 2 cut(s) 43, 319
HgaI GACGC 2 cut(s) 208, 223
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 3 cut(s) 118, 131, 234
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 2 cut(s) 66, 182
HpaII CCGG 2 cut(s) 43, 319
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 4 cut(s) 163, 217, 241, 424
Hpy188I TCNGA 2 cut(s) 139, 388
Hpy188III TCNNGA 3 cut(s) 196, 392, 439
Hpy8I GTNNAC 4 cut(s) 163, 217, 241, 424
Hpy99I CGWCG 5 cut(s) 133, 136, 139, 202, 239
HpyCH4III ACNGT 3 cut(s) 91, 214, 326
HpyCH4IV ACGT 2 cut(s) 131, 349
HpyCH4V TGCA 6 cut(s) 21, 30, 277, 359, 452, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 148
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 2 cut(s) 131, 349
Hsp92I GRCGYC 3 cut(s) 118, 131, 234
HspAI GCGC 1 cut(s) 118
KasI GGCGCC 1 cut(s) 117
KroI GCCGGC 1 cut(s) 318
KroNI GCCGGC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 262, 388
LmnI GCTCC 3 cut(s) 60, 139, 147
LpnPI CCDG 7 cut(s) 31, 40, 56, 94, 270, 332, 412
MaeI CTAG 1 cut(s) 336
MaeII ACGT 2 cut(s) 131, 349
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 264, 390
MboI GATC 2 cut(s) 262, 388
MboII GAAGA 2 cut(s) 241, 296
MfeI CAATTG 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 434, 462
Mly113I GGCGCC 1 cut(s) 118
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 5 cut(s) 45, 253, 280, 406, 412
Mph1103I ATGCAT 1 cut(s) 484
MroNI GCCGGC 1 cut(s) 318
MspI CCGG 2 cut(s) 43, 319
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 30
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 27, 148
NaeI GCCGGC 1 cut(s) 320
NarI GGCGCC 1 cut(s) 118
NdeII GATC 2 cut(s) 262, 388
NgoMIV GCCGGC 1 cut(s) 318
NlaIV GGNNCC 2 cut(s) 119, 459
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 3 cut(s) 62, 122, 233
PleI GAGTC 1 cut(s) 176
PluTI GGCGCC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 119, 459
PspPI GGNCC 2 cut(s) 4, 458
PsyI GACNNNGTC 1 cut(s) 133
RsaI GTAC 4 cut(s) 240, 269, 334, 348
RsaNI GTAC 4 cut(s) 239, 268, 333, 347
SacI GAGCTC 1 cut(s) 144
SatI GCNGC 3 cut(s) 61, 121, 232
Sau3AI GATC 2 cut(s) 262, 388
Sau96I GGNCC 2 cut(s) 4, 458
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 144
SetI ASST 4 cut(s) 134, 144, 352, 423
SfoI GGCGCC 1 cut(s) 119
SinI GGWCC 2 cut(s) 4, 458
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 2 cut(s) 434, 462
SsiI CCGC 4 cut(s) 58, 61, 121, 231
SspDI GGCGCC 1 cut(s) 117
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 144
TaaI ACNGT 3 cut(s) 91, 214, 326
TaiI ACGT 2 cut(s) 134, 352
TaqII GACCGA 1 cut(s) 183
TasI AATT 2 cut(s) 434, 462
TatI WGTACW 2 cut(s) 267, 332
TauI GCSGC 3 cut(s) 63, 123, 234
TfiI GAWTC 1 cut(s) 66
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspRI CASTG 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 4, 458
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 1 cut(s) 336
ZraI GACGTC 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.