RchiOBHm_Chr7g0209251

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0009435
Physical Location & Seq
Reverse (-)
26622959 .. 26626246
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18728

Sequence Viewer

Length: 573 bp
ATGGACCACGCCATTCCCTGCAACCCCTGCATTCCTCTGTACCGGAAGCCCACGCTCCGCCGCCGAATCACTTGGCCGACCAGCACCACCGTTCGCCACTCCAATACAACAAAATGGCGCCGCAATACGACGTCGTCGGAGCTCCAAATGCCCGTAGAAGTGAACGACCGGACGAGTAGCGACTCTGCTTCAGTCCCGACGCACAAAGTCACCGTCCACGACAGACAACGCGGCGTGGTCCACGAGTTCTTCGTCCCAGAGGATCAGTACATATTGCACACTGCTGAGGCACAGAACATCACTCTTCCATTCGCTTGCCGGCACGGTTGTTGTACTAGTTGTGCTGTACGTGTGAAGTCTGGAAAACTTAACCAGCCTCAGGCACTAGGGATATCTGCTGAATTGAAATCAAAGGGATACGCACTTCTTTGTGTGGGTTTTCCATCATCTGATCTTGAAGTAGAAACACAAGATGAGGATGAGGTATACTGGCTTCAATTCGGGAGATATTTTGCACGGGGTCCAATTGAAAGAGATGATTATGCATTGGAGTTGGCATTGGGTGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

190

Amino Acids

21.52

Weight (kDa)

6.38

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 80 - 147 8.4e-14 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 486
AccII CGCG 1 cut(s) 231
AciI CCGC 4 cut(s) 58, 61, 121, 231
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 174
AcyI GRCGYC 2 cut(s) 118, 131
AfaI GTAC 4 cut(s) 41, 269, 334, 348
AfiI CCNNNNNNNGG 1 cut(s) 379
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 4 cut(s) 406, 458, 497, 530
AhlI ACTAGT 1 cut(s) 335
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw21I GWGCWC 1 cut(s) 144
AlwI GGATC 1 cut(s) 270
AoxI GGCC 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 3 cut(s) 4, 238, 521
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 3 cut(s) 4, 238, 521
AxyI CCTNAGG 1 cut(s) 378
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 144
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BauI CACGAG 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 285
BccI CCATC 1 cut(s) 451
BciVI GTATCC 1 cut(s) 410
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 2 cut(s) 336, 386
BfoI RGCGCY 1 cut(s) 121
BfuI GTATCC 1 cut(s) 410
BisI GCNGC 3 cut(s) 61, 121, 232
BlsI GCNGC 3 cut(s) 62, 122, 233
Bme18I GGWCC 3 cut(s) 4, 238, 521
BmgT120I GGNCC 3 cut(s) 4, 238, 521
BmiI GGNNCC 2 cut(s) 119, 522
Bpu10I CCTNAGC 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 350
BsaHI GRCGYC 2 cut(s) 118, 131
BsaWI WCCGGW 2 cut(s) 42, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 494
Bse21I CCTNAGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 276, 392
BseNI ACTGG 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 3 cut(s) 43, 169, 319
BslFI GGGAC 2 cut(s) 179, 239
BslI CCNNNNNNNGG 1 cut(s) 379
BsmFI GGGAC 2 cut(s) 179, 239
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 262, 451
BspACI CCGC 4 cut(s) 58, 61, 121, 231
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 2 cut(s) 277, 391
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 119, 522
BspPI GGATC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 318
BssMI GATC 2 cut(s) 262, 451
BssNAI GTATAC 1 cut(s) 487
BssNI GRCGYC 2 cut(s) 118, 131
BssSI CACGAG 1 cut(s) 242
Bst1107I GTATAC 1 cut(s) 487
Bst2BI CACGAG 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 91, 214, 326
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 2 cut(s) 118, 131
BstAPI GCANNNNNTGC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 316, 320
BstDEI CTNAG 2 cut(s) 285, 378
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 265, 454
BstMBI GATC 2 cut(s) 262, 451
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 27, 148
BstUI CGCG 1 cut(s) 231
BstZ17I GTATAC 1 cut(s) 487
Bsu36I CCTNAGG 1 cut(s) 378
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 316, 320
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 3 cut(s) 4, 238, 521
CseI GACGC 1 cut(s) 208
Csp6I GTAC 4 cut(s) 40, 268, 333, 347
CviJI RGCY 5 cut(s) 49, 76, 142, 376, 493
CviKI_1 RGCY 5 cut(s) 49, 76, 142, 376, 493
CviQI GTAC 4 cut(s) 40, 268, 333, 347
DdeI CTNAG 2 cut(s) 285, 378
DinI GGCGCC 1 cut(s) 119
DpnI GATC 2 cut(s) 264, 453
DpnII GATC 2 cut(s) 262, 451
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EciI GGCGGA 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 144
Eco32I GATATC 1 cut(s) 393
Eco47I GGWCC 3 cut(s) 4, 238, 521
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 174
Eco81I CCTNAGG 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 142
EcoRV GATATC 1 cut(s) 393
EcoT22I ATGCAT 1 cut(s) 547
EcoT38I GRGCYC 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 119
EheI GGCGCC 1 cut(s) 119
FaiI YATR 3 cut(s) 272, 487, 543
FaqI GGGAC 2 cut(s) 179, 239
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 3 cut(s) 61, 121, 232
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 3 cut(s) 61, 121, 232
FspBI CTAG 2 cut(s) 336, 386
GlaI GCGC 1 cut(s) 119
GluI GCNGC 3 cut(s) 61, 121, 232
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 76
HapII CCGG 3 cut(s) 43, 169, 319
HgaI GACGC 1 cut(s) 208
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 2 cut(s) 118, 131
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 2 cut(s) 66, 182
HpaII CCGG 3 cut(s) 43, 169, 319
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 4 cut(s) 163, 217, 241, 487
Hpy188I TCNGA 2 cut(s) 139, 451
Hpy188III TCNNGA 4 cut(s) 196, 360, 455, 502
Hpy8I GTNNAC 4 cut(s) 163, 217, 241, 487
Hpy99I CGWCG 4 cut(s) 133, 136, 139, 202
HpyCH4III ACNGT 3 cut(s) 91, 214, 326
HpyCH4IV ACGT 2 cut(s) 131, 349
HpyCH4V TGCA 5 cut(s) 21, 30, 277, 515, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 148
HpyF3I CTNAG 2 cut(s) 285, 378
HpySE526I ACGT 2 cut(s) 131, 349
Hsp92I GRCGYC 2 cut(s) 118, 131
HspAI GCGC 1 cut(s) 118
KasI GGCGCC 1 cut(s) 117
KroI GCCGGC 1 cut(s) 318
KroNI GCCGGC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 262, 451
LmnI GCTCC 3 cut(s) 60, 139, 147
MaeI CTAG 2 cut(s) 336, 386
MaeII ACGT 2 cut(s) 131, 349
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 264, 453
MboI GATC 2 cut(s) 262, 451
MboII GAAGA 2 cut(s) 241, 296
MfeI CAATTG 1 cut(s) 525
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 3 cut(s) 401, 497, 525
Mly113I GGCGCC 1 cut(s) 118
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 6 cut(s) 45, 253, 280, 387, 469, 475
Mph1103I ATGCAT 1 cut(s) 547
MroNI GCCGGC 1 cut(s) 318
MseI TTAA 1 cut(s) 369
MspI CCGG 3 cut(s) 43, 169, 319
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 30
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 27, 148
NaeI GCCGGC 1 cut(s) 320
NarI GGCGCC 1 cut(s) 118
NdeII GATC 2 cut(s) 262, 451
NgoMIV GCCGGC 1 cut(s) 318
NlaIV GGNNCC 2 cut(s) 119, 522
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 3 cut(s) 62, 122, 233
PleI GAGTC 1 cut(s) 176
PluTI GGCGCC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 119, 522
PspPI GGNCC 3 cut(s) 4, 238, 521
PsyI GACNNNGTC 1 cut(s) 133
RsaI GTAC 4 cut(s) 41, 269, 334, 348
RsaNI GTAC 4 cut(s) 40, 268, 333, 347
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 61, 121, 232
Sau3AI GATC 2 cut(s) 262, 451
Sau96I GGNCC 3 cut(s) 4, 238, 521
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 144
SetI ASST 4 cut(s) 134, 144, 352, 486
SfoI GGCGCC 1 cut(s) 119
SinI GGWCC 3 cut(s) 4, 238, 521
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 3 cut(s) 401, 497, 525
SsiI CCGC 4 cut(s) 58, 61, 121, 231
SspDI GGCGCC 1 cut(s) 117
SspMI CTAG 2 cut(s) 336, 386
SstI GAGCTC 1 cut(s) 144
TaaI ACNGT 3 cut(s) 91, 214, 326
TaiI ACGT 2 cut(s) 134, 352
TasI AATT 3 cut(s) 401, 497, 525
TatI WGTACW 2 cut(s) 267, 332
TauI GCSGC 3 cut(s) 63, 123, 234
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspRI CASTG 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 3 cut(s) 4, 238, 521
XmiI GTMKAC 1 cut(s) 486
XspI CTAG 2 cut(s) 336, 386
ZraI GACGTC 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.