MD16G1276600.v1.1

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0009435
Physical Location & Seq
Forward (+)
37432391 .. 37434975
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1276600.v1.1.491

Sequence Viewer

Length: 603 bp
ATGGCTTACCCGTCAACCAGAATTAGTGTCATGGACCATGCCATTCCCTGCAATCCCTGCATTTCCCTTTCTATCCACCTGAAACCGCCACCCTTCCGCCAAATCAGTTGGCCAAACACCGTCACCCACCACTCCAACATAACCAAATGGCGTCGCAACACGACTTCCGAGCTCCAAACTCCGGTGGCTGTCACCGACCGAACCGGTGACTGCTCTCCTTCAGTTCCCACACACAAAGTCACCGTTCACGACAGACAACGAGGAGTCTCCCACCAGTTCCTCGTCCCCGAGGACCAGTACATATTGCACACAGCAGAGTCGCAGGACATCACGCTTCCATTCGCTTGCAGGCACGGTTGTTGTACCAGTTGTGCAGTACGCGTAAAATCTGGAGAACTTAGACAGCCTGAGGCACTAGGAATTTCTACCGAATTGAAATCAAAGGGCTATGCACTTCTCTGTGTGGGTTATCCATCATCTGATCTTGAAGTAGAAACGCAAGAGGAGGATGAGGTATATTGGCTTCAGTTTGGCAGATATTTTGCTCGGGGACCAATTGAAAGAGATGACTATGCATTGGAGTTAGCTATGGGGGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

201

Amino Acids

22.51

Weight (kDa)

5.83

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 87 - 158 1.1e-14 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 381
AciI CCGC 2 cut(s) 86, 97
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 2 cut(s) 204, 509
AcyI GRCGYC 1 cut(s) 151
AfaI GTAC 3 cut(s) 299, 364, 378
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 379
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 3 cut(s) 436, 488, 560
AluBI AGCT 2 cut(s) 172, 587
AluI AGCT 2 cut(s) 172, 587
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 271
Ama87I CYCGRG 2 cut(s) 287, 546
AoxI GGCC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 420
AsiGI ACCGGT 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 34, 292, 551
AsuHPI GGTGA 4 cut(s) 115, 184, 218, 232
AvaI CYCGRG 2 cut(s) 287, 546
AvaII GGWCC 3 cut(s) 34, 292, 551
AxyI CCTNAGG 1 cut(s) 408
BalI TGGCCA 1 cut(s) 112
BanII GRGCYC 1 cut(s) 174
BarI GAAGNNNNNNTAC 2 cut(s) 507, 539
Bbv12I GWGCWC 1 cut(s) 174
BccI CCATC 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 1 cut(s) 416
Bme18I GGWCC 3 cut(s) 34, 292, 551
BmeT110I CYCGRG 2 cut(s) 287, 546
BmgT120I GGNCC 3 cut(s) 34, 292, 551
BmiI GGNNCC 1 cut(s) 552
BpmI CTGGAG 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 2 cut(s) 181, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 3 cut(s) 274, 295, 366
Bse21I CCTNAGG 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 2 cut(s) 514, 601
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 3 cut(s) 274, 295, 366
BseRI GAGGAG 2 cut(s) 276, 518
BsgI GTGCAG 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 112
BshTI ACCGGT 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 2 cut(s) 287, 546
BsiSI CCGG 2 cut(s) 182, 204
BslFI GGGAC 2 cut(s) 269, 564
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 2 cut(s) 269, 564
BsnI GGCC 1 cut(s) 112
BsoBI CYCGRG 2 cut(s) 287, 546
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 481
BspACI CCGC 2 cut(s) 86, 97
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 400
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 3 cut(s) 274, 295, 366
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 481
BssNI GRCGYC 1 cut(s) 151
Bst4CI ACNGT 3 cut(s) 121, 244, 356
BstACI GRCGYC 1 cut(s) 151
BstAPI GCANNNNNTGC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 346, 350
BstDEI CTNAG 2 cut(s) 398, 408
BstF5I GGATG 2 cut(s) 514, 601
BstFNI CGCG 1 cut(s) 381
BstKTI GATC 1 cut(s) 484
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 1 cut(s) 481
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstUI CGCG 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 408
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 514, 601
Cac8I GCNNGC 2 cut(s) 346, 350
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 34, 292, 551
CseI GACGC 1 cut(s) 140
Csp6I GTAC 3 cut(s) 298, 363, 377
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 2 cut(s) 31, 38
CviJI RGCY 8 cut(s) 5, 112, 172, 188, 406, 447, 523, 587
CviKI_1 RGCY 8 cut(s) 5, 112, 172, 188, 406, 447, 523, 587
CviQI GTAC 3 cut(s) 298, 363, 377
DdeI CTNAG 2 cut(s) 398, 408
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 110
EciI GGCGGA 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 3 cut(s) 34, 292, 551
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 2 cut(s) 204, 509
Eco81I CCTNAGG 1 cut(s) 408
Eco88I CYCGRG 2 cut(s) 287, 546
EcoICRI GAGCTC 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 2 cut(s) 34, 41
FaiI YATR 8 cut(s) 32, 39, 140, 302, 450, 517, 573, 590
FaqI GGGAC 2 cut(s) 269, 564
FatI CATG 2 cut(s) 30, 37
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 1 cut(s) 174
FspBI CTAG 1 cut(s) 416
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 112
HapII CCGG 2 cut(s) 182, 204
HgaI GACGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 2 cut(s) 34, 41
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 2 cut(s) 264, 317
HpaII CCGG 2 cut(s) 182, 204
HphI GGTGA 4 cut(s) 115, 184, 218, 232
Hpy166II GTNNAC 2 cut(s) 15, 247
Hpy188I TCNGA 2 cut(s) 169, 481
Hpy188III TCNNGA 3 cut(s) 248, 390, 485
Hpy8I GTNNAC 2 cut(s) 15, 247
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 103, 228
HpyCH4III ACNGT 3 cut(s) 121, 244, 356
HpyCH4V TGCA 7 cut(s) 51, 60, 307, 348, 374, 452, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 2 cut(s) 398, 408
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 2 cut(s) 34, 41
Kzo9I GATC 1 cut(s) 481
LmnI GCTCC 1 cut(s) 177
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 4 cut(s) 121, 190, 206, 238
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MfeI CAATTG 1 cut(s) 555
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 112
MluCI AATT 4 cut(s) 21, 420, 431, 555
MluI ACGCGT 1 cut(s) 379
MluNI TGGCCA 1 cut(s) 112
MlyI GAGTC 2 cut(s) 273, 326
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 7 cut(s) 254, 283, 290, 403, 496, 499, 505
Mox20I TGGCCA 1 cut(s) 112
Mph1103I ATGCAT 1 cut(s) 577
MscI TGGCCA 1 cut(s) 112
Msp20I TGGCCA 1 cut(s) 112
MspI CCGG 2 cut(s) 182, 204
MunI CAATTG 1 cut(s) 555
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 57
NdeII GATC 1 cut(s) 481
NlaIII CATG 2 cut(s) 34, 41
NlaIV GGNNCC 1 cut(s) 552
NmuCI GTSAC 4 cut(s) 121, 190, 206, 238
NsiI ATGCAT 1 cut(s) 577
PinAI ACCGGT 1 cut(s) 203
PleI GAGTC 2 cut(s) 272, 325
PpsI GAGTC 2 cut(s) 272, 325
Psp124BI GAGCTC 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 552
PspPI GGNCC 3 cut(s) 34, 292, 551
RsaI GTAC 3 cut(s) 299, 364, 378
RsaNI GTAC 3 cut(s) 298, 363, 377
SacI GAGCTC 1 cut(s) 174
Sau3AI GATC 1 cut(s) 481
Sau96I GGNCC 3 cut(s) 34, 292, 551
SchI GAGTC 2 cut(s) 273, 326
SduI GDGCHC 1 cut(s) 174
SetI ASST 4 cut(s) 81, 174, 516, 589
SinI GGWCC 3 cut(s) 34, 292, 551
Sse9I AATT 4 cut(s) 21, 420, 431, 555
SsiI CCGC 2 cut(s) 86, 97
SspMI CTAG 1 cut(s) 416
SstI GAGCTC 1 cut(s) 174
TaaI ACNGT 3 cut(s) 121, 244, 356
TaqII GACCGA 1 cut(s) 213
TasI AATT 4 cut(s) 21, 420, 431, 555
TatI WGTACW 1 cut(s) 297
TseFI GTSAC 4 cut(s) 121, 190, 206, 238
Tsp45I GTSAC 4 cut(s) 121, 190, 206, 238
VpaK11BI GGWCC 3 cut(s) 34, 292, 551
XapI RAATTY 1 cut(s) 420
XspI CTAG 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.