FvH4_5g24480

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005028
Physical Location & Seq
Reverse (-)
15823093 .. 15828359
5267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24480.t1

Sequence Viewer

Length: 1656 bp
ATGGGATCGAGTGGCAGCAAAGCGGCGACGCCGTCGTCGTCCGGTGACGGTGGCCAGAGGCGGCGATCCAAATCCTTCGGCGGCAGGGTGTTCCGGTCGTCTTGTCTAAGGATCAAATCTCGATCTCACCGCAGCGACGATGACGAGCAGGTTTGTGAACATCAGAACAAAGGAAGTAGAATTATTGCTCCTTGTACAAACCAGACTGTCACAGATCAGGATCGTGCAAAGGAGTATTTCAGAAAGGTTAACGTTCAACAGTCTGATGAAATGCCTTGTATATCTTCAAATGTTGAACTCAATGAATGGGGTGATGCTAGCATCAATGATACTGTCTCCAGAACTGATCCCTCCTCTGCTCAAGATTCTGCTACTCCATCTTTGAACCCTTCAGGTCGTTTCCTTTCCCGTTTTAGTTTCGTTCCTGGCAATGTAAGCTTCAGGCTAAGCCGAGCAACCAGTTTGGGGTCATCTAGGTCTTATCCTCTATCATCAACAAGTGTCACAGTTTTGAATAATGATGATGACCTACATCTGCAAACAGGACCTTCTACCAGTTTGGTTGGTAGAGATGAAAGTCAAGAAGGTTGTGAATTTCTTCCAGAATCACTGGTTAATAGGGCTCCTACACAATTTTTTGAAGACACTTCTGGTAGTTTAGGATTAAACACTGTGGAATCTGGTTTTTCTGGCAATTTGCAAGACAATCAGACAAATTCTTCTATACAAGTTGGCAGAAATGCTAATGGTAGAATAATAGGGGTACATAACAGATACTCAGGATCTCAGGAACCTGTAGAACGAAATGTTCGTTTTAGTAGAACCTTAAGTGTTGGGAGACTTCGTGACAGGGTTCTTCGTCGATCATCTTTGTCTGATTTAACATTTTCTTCCATGCAACAAGAGGGAGAGGTGAGAGATACAAATCAGGGGGATGATACAAGGACATTGGCACCTGAAAGTAGTGTTGTAAACTTGCAAAACGGGTCTGGTGATCCTCCTTCCAATATGTTGAATTCATTGTTTAGCAACCAAGACTTTGAGGTGGAAACAATAAGACCAAGAGAAGCCAGGTATCATGATCTGCTCGAACACAGATCAAATTTCCTCGAGCGGAGGAGAAGAATTAGATCTCAGGTTCGTGCACTTCAGCGGTTAGGGAGCCGTTTTGAAAATGTGTCTGGACATGAGAGGTCTTGTATATTATCTGGTCATCAGAGAACAGGTCGTTGTACATGTCGTTCAAGTAACCGAGATGCCCTTCCAAATGATAACAGCAGTGCTAGGGCAAGCATATCCCGAATTGTTATGTTAGCTGAGGCTTTGTTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCCTCCCGACCTTCTGTATCTTCAATTGGATCTGTTCCTGCACCTAATGAAGTTGTAGAATCTTTGCCTGTCAAATTATTTTCCAAAGTGCAAAAACATCAGAATGAGGAGGCTGCACAATGCTACATATGCCTTGTGGAGTATGAAGAAGGAGATGAAATGCGGATACTGCCTTGCAATCATGAATTTCATAAAACTTGTATTGACAAGTGGCTCAAGGAGATTCACAGGGTATGCCCACTTTGTCGCCGGGATGTCTGCAGATCGGACCAGCCCATAGAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

552

Amino Acids

61.37

Weight (kDa)

6.9

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 494 - 539 9.2e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 496 - 539 1e-13 Ring finger domain
zf-RING_11 PF17123 496 - 524 4.3e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 496 - 538 2.2e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 497 - 538 9.3e-09 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 952
AccBSI CCGCTC 1 cut(s) 1114
AciI CCGC 7 cut(s) 23, 61, 81, 130, 1114, 1153, 1531
AclI AACGTT 1 cut(s) 252
AclWI GGATC 8 cut(s) 13, 60, 119, 228, 341, 790, 989, 1405
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 6 cut(s) 593, 715, 1015, 1102, 1344, 1553
AcuI CTGAAG 3 cut(s) 375, 424, 1133
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 3 cut(s) 196, 765, 1234
AfiI CCNNNNNNNGG 1 cut(s) 465
AflII CTTAAG 1 cut(s) 826
AflIII ACRYGT 1 cut(s) 1235
AjnI CCWGG 2 cut(s) 424, 1070
AluBI AGCT 2 cut(s) 438, 1316
AluI AGCT 2 cut(s) 438, 1316
Alw21I GWGCWC 1 cut(s) 1147
Alw26I GTCTC 2 cut(s) 340, 832
Alw44I GTGCAC 1 cut(s) 1143
AlwI GGATC 8 cut(s) 13, 60, 119, 228, 341, 790, 989, 1405
Ama87I CYCGRG 1 cut(s) 1109
AoxI GGCC 1 cut(s) 52
ApaLI GTGCAC 1 cut(s) 1143
ApeKI GCWGC 3 cut(s) 15, 132, 1481
ApoI RAATTY 6 cut(s) 593, 715, 1015, 1102, 1344, 1553
Asp700I GAANNNNTTC 1 cut(s) 597
AspS9I GGNCC 2 cut(s) 545, 1636
AsuC2I CCSGG 1 cut(s) 1619
AsuHPI GGTGA 6 cut(s) 56, 119, 323, 925, 1004, 1340
AsuNHI GCTAGC 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 1109
AvaII GGWCC 2 cut(s) 545, 1636
BaeGI GKGCMC 1 cut(s) 1147
BalI TGGCCA 1 cut(s) 54
BanI GGYRCC 1 cut(s) 952
BanII GRGCYC 1 cut(s) 625
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 1147
BbvCI CCTCAGC 1 cut(s) 1317
BbvI GCAGC 3 cut(s) 27, 144, 1468
BccI CCATC 1 cut(s) 385
BceAI ACGGC 2 cut(s) 16, 1149
BciT130I CCWGG 2 cut(s) 426, 1072
BciVI GTATCC 1 cut(s) 1527
BcnI CCSGG 1 cut(s) 1619
BcoDI GTCTC 2 cut(s) 340, 832
BfaI CTAG 3 cut(s) 318, 474, 1284
BfmI CTRYAG 2 cut(s) 795, 1627
BfrI CTTAAG 1 cut(s) 826
BfuAI ACCTGC 1 cut(s) 139
BfuI GTATCC 1 cut(s) 1527
BglII AGATCT 1 cut(s) 1130
BisI GCNGC 6 cut(s) 16, 24, 62, 82, 133, 1482
BlpI GCTNAGC 1 cut(s) 446
BlsI GCNGC 6 cut(s) 17, 25, 63, 83, 134, 1483
Bme1390I CCNGG 3 cut(s) 426, 1072, 1619
Bme18I GGWCC 2 cut(s) 545, 1636
BmeT110I CYCGRG 1 cut(s) 1109
BmgT120I GGNCC 2 cut(s) 545, 1636
BmiI GGNNCC 4 cut(s) 624, 792, 954, 1163
BmrFI CCNGG 3 cut(s) 426, 1072, 1619
BmsI GCATC 3 cut(s) 304, 330, 1246
BmtI GCTAGC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 648
BpmI CTGGAG 1 cut(s) 322
Bpu10I CCTNAGC 1 cut(s) 1317
Bpu1102I GCTNAGC 1 cut(s) 446
BpuEI CTTGAG 2 cut(s) 345, 1568
BpuMI CCSGG 1 cut(s) 1619
BsaBI GATNNNNATC 3 cut(s) 70, 219, 924
BsaHI GRCGYC 1 cut(s) 29
BsaWI WCCGGW 2 cut(s) 41, 93
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 1 cut(s) 465
Bse1I ACTGG 3 cut(s) 459, 555, 615
Bse3DI GCAATG 1 cut(s) 436
Bse8I GATNNNNATC 3 cut(s) 70, 219, 924
BseBI CCWGG 2 cut(s) 426, 1072
BseGI GGATG 3 cut(s) 940, 1345, 1627
BseJI GATNNNNATC 3 cut(s) 70, 219, 924
BseLI CCNNNNNNNGG 1 cut(s) 465
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 4 cut(s) 792, 800, 1148, 1308
BseNI ACTGG 3 cut(s) 459, 555, 615
BseRI GAGGAG 3 cut(s) 343, 1132, 1490
BseSI GKGCMC 1 cut(s) 1147
BseXI GCAGC 3 cut(s) 27, 144, 1468
BsgI GTGCAG 2 cut(s) 1392, 1467
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 952
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 1147
BsiHKCI CYCGRG 1 cut(s) 1109
BsiSI CCGG 3 cut(s) 42, 94, 1618
BslI CCNNNNNNNGG 1 cut(s) 465
BsmAI GTCTC 2 cut(s) 340, 832
BsnI GGCC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 1109
Bsp1286I GDGCHC 2 cut(s) 625, 1147
Bsp1407I TGTACA 2 cut(s) 194, 1232
Bsp1720I GCTNAGC 1 cut(s) 446
BspACI CCGC 7 cut(s) 23, 61, 81, 130, 1114, 1153, 1531
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 4 cut(s) 791, 799, 1147, 1309
BspHI TCATGA 2 cut(s) 1078, 1549
BspLI GGNNCC 4 cut(s) 624, 792, 954, 1163
BspMAI CTGCAG 1 cut(s) 1631
BspMI ACCTGC 1 cut(s) 139
BspOI GCTAGC 1 cut(s) 321
BspPI GGATC 8 cut(s) 13, 60, 119, 228, 341, 790, 989, 1405
BspT107I GGYRCC 1 cut(s) 952
BspTI CTTAAG 1 cut(s) 826
BsrBI CCGCTC 1 cut(s) 1114
BsrDI GCAATG 1 cut(s) 436
BsrGI TGTACA 2 cut(s) 194, 1232
BsrI ACTGG 3 cut(s) 459, 555, 615
BssNI GRCGYC 1 cut(s) 29
Bst2UI CCWGG 2 cut(s) 426, 1072
Bst4CI ACNGT 6 cut(s) 50, 208, 261, 334, 508, 673
BstACI GRCGYC 1 cut(s) 29
BstAFI CTTAAG 1 cut(s) 826
BstAUI TGTACA 2 cut(s) 194, 1232
BstC8I GCNNGC 2 cut(s) 319, 1291
BstDEI CTNAG 6 cut(s) 107, 446, 778, 786, 1134, 1317
BstF5I GGATG 3 cut(s) 940, 1345, 1627
BstMAI GTCTC 2 cut(s) 340, 832
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 3 cut(s) 435, 1497, 1537
BstNI CCWGG 2 cut(s) 426, 1072
BstNSI RCATGY 1 cut(s) 1239
BstSCI CCNGG 3 cut(s) 424, 1070, 1617
BstSFI CTRYAG 2 cut(s) 795, 1627
BstSLI GKGCMC 1 cut(s) 1147
BstV1I GCAGC 3 cut(s) 27, 144, 1468
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 3 cut(s) 782, 1130, 1397
BstYI RGATCY 3 cut(s) 782, 1130, 1397
BsuI GTATCC 1 cut(s) 1527
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 3 cut(s) 940, 1345, 1627
BtsI GCAGTG 1 cut(s) 1285
BtsIMutI CAGTG 3 cut(s) 608, 669, 1285
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 319, 1291
CciI TCATGA 2 cut(s) 1078, 1549
Cfr13I GGNCC 2 cut(s) 545, 1636
CseI GACGC 1 cut(s) 37
Csp6I GTAC 3 cut(s) 195, 764, 1233
CviAII CATG 5 cut(s) 895, 1079, 1187, 1236, 1550
CviQI GTAC 3 cut(s) 195, 764, 1233
DdeI CTNAG 6 cut(s) 107, 446, 778, 786, 1134, 1317
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 625
Eco47I GGWCC 2 cut(s) 545, 1636
Eco57I CTGAAG 3 cut(s) 375, 424, 1133
Eco88I CYCGRG 1 cut(s) 1109
EcoO109I RGGNCCY 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 1015
EcoRII CCWGG 2 cut(s) 424, 1070
EcoT38I GRGCYC 1 cut(s) 625
FaeI CATG 5 cut(s) 898, 1082, 1190, 1239, 1553
FatI CATG 5 cut(s) 894, 1078, 1186, 1235, 1549
FauNDI CATATG 1 cut(s) 1496
Fnu4HI GCNGC 6 cut(s) 16, 24, 62, 82, 133, 1482
FokI GGATG 3 cut(s) 947, 1352, 1634
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 6 cut(s) 16, 24, 62, 82, 133, 1482
FspBI CTAG 3 cut(s) 318, 474, 1284
GluI GCNGC 6 cut(s) 16, 24, 62, 82, 133, 1482
GsuI CTGGAG 1 cut(s) 322
HaeIII GGCC 1 cut(s) 54
HapII CCGG 3 cut(s) 42, 94, 1618
HgaI GACGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 5 cut(s) 898, 1082, 1190, 1239, 1553
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 436
HinfI GANTC 5 cut(s) 365, 605, 677, 1427, 1591
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 3 cut(s) 42, 94, 1618
HphI GGTGA 6 cut(s) 56, 119, 323, 925, 1004, 1340
Hpy166II GTNNAC 4 cut(s) 158, 250, 973, 1145
Hpy188I TCNGA 8 cut(s) 165, 242, 265, 711, 877, 1218, 1470, 1636
Hpy8I GTNNAC 4 cut(s) 158, 250, 973, 1145
Hpy99I CGWCG 5 cut(s) 31, 37, 40, 140, 864
HpyAV CCTTC 8 cut(s) 85, 399, 558, 578, 1011, 1271, 1389, 1511
HpyCH4III ACNGT 6 cut(s) 50, 208, 261, 334, 508, 673
HpyCH4IV ACGT 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 1497, 1537
HpyF3I CTNAG 6 cut(s) 107, 446, 778, 786, 1134, 1317
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 5 cut(s) 898, 1082, 1190, 1239, 1553
KspAI GTTAAC 1 cut(s) 250
LmnI GCTCC 3 cut(s) 193, 628, 1161
Lsp1109I GCAGC 3 cut(s) 27, 144, 1468
LweI GCATC 3 cut(s) 304, 330, 1246
MaeI CTAG 3 cut(s) 318, 474, 1284
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 5 cut(s) 44, 208, 502, 845, 1247
MbiI CCGCTC 1 cut(s) 1114
MboII GAAGA 9 cut(s) 276, 590, 653, 711, 848, 882, 1134, 1380, 1526
MfeI CAATTG 1 cut(s) 1392
MflI RGATCY 3 cut(s) 782, 1130, 1397
MhlI GDGCHC 2 cut(s) 625, 1147
MlsI TGGCCA 1 cut(s) 54
MluNI TGGCCA 1 cut(s) 54
Mox20I TGGCCA 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 597
MscI TGGCCA 1 cut(s) 54
MseI TTAA 6 cut(s) 249, 615, 665, 827, 881, 1654
MslI CAYNNNNRTG 1 cut(s) 1470
Msp20I TGGCCA 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 1153
MspCI CTTAAG 1 cut(s) 826
MspI CCGG 3 cut(s) 42, 94, 1618
MspR9I CCNGG 3 cut(s) 426, 1072, 1619
MunI CAATTG 1 cut(s) 1392
MvaI CCWGG 2 cut(s) 426, 1072
MwoI GCNNNNNNNGC 3 cut(s) 435, 1497, 1537
NciI CCSGG 1 cut(s) 1619
NdeI CATATG 1 cut(s) 1496
NheI GCTAGC 1 cut(s) 317
NlaIII CATG 5 cut(s) 898, 1082, 1190, 1239, 1553
NlaIV GGNNCC 4 cut(s) 624, 792, 954, 1163
NmeAIII GCCGAG 1 cut(s) 476
NmuCI GTSAC 4 cut(s) 44, 208, 502, 845
NspI RCATGY 1 cut(s) 1239
PaeR7I CTCGAG 1 cut(s) 1109
PagI TCATGA 2 cut(s) 1078, 1549
PciI ACATGT 1 cut(s) 1235
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 808
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 5 cut(s) 365, 605, 677, 1427, 1591
PflFI GACNNNGTC 1 cut(s) 31
PkrI GCNGC 6 cut(s) 17, 25, 63, 83, 134, 1483
PpuMI RGGWCCY 1 cut(s) 545
PscI ACATGT 1 cut(s) 1235
Psp1406I AACGTT 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 545
Psp6I CCWGG 2 cut(s) 424, 1070
PspGI CCWGG 2 cut(s) 424, 1070
PspN4I GGNNCC 4 cut(s) 624, 792, 954, 1163
PspPI GGNCC 2 cut(s) 545, 1636
PspPPI RGGWCCY 1 cut(s) 545
PspXI VCTCGAGB 1 cut(s) 1109
PsrI GAACNNNNNNTAC 2 cut(s) 1225, 1257
PstI CTGCAG 1 cut(s) 1631
PsuI RGATCY 3 cut(s) 782, 1130, 1397
PsyI GACNNNGTC 1 cut(s) 31
RsaI GTAC 3 cut(s) 196, 765, 1234
RsaNI GTAC 3 cut(s) 195, 764, 1233
RseI CAYNNNNRTG 1 cut(s) 1470
SaqAI TTAA 6 cut(s) 249, 615, 665, 827, 881, 1654
SatI GCNGC 6 cut(s) 16, 24, 62, 82, 133, 1482
Sau96I GGNCC 2 cut(s) 545, 1636
ScrFI CCNGG 3 cut(s) 426, 1072, 1619
SduI GDGCHC 2 cut(s) 625, 1147
SfaNI GCATC 3 cut(s) 304, 330, 1246
SfcI CTRYAG 2 cut(s) 795, 1627
Sfr274I CTCGAG 1 cut(s) 1109
SinI GGWCC 2 cut(s) 545, 1636
SlaI CTCGAG 1 cut(s) 1109
SmiMI CAYNNNNRTG 1 cut(s) 1470
SmlI CTYRAG 4 cut(s) 360, 826, 1109, 1583
SmoI CTYRAG 4 cut(s) 360, 826, 1109, 1583
SsiI CCGC 7 cut(s) 23, 61, 81, 130, 1114, 1153, 1531
SspMI CTAG 3 cut(s) 318, 474, 1284
StyD4I CCNGG 3 cut(s) 424, 1070, 1617
TaaI ACNGT 6 cut(s) 50, 208, 261, 334, 508, 673
TaiI ACGT 1 cut(s) 255
TaqI TCGA 5 cut(s) 8, 121, 862, 1089, 1110
TatI WGTACW 2 cut(s) 194, 1232
TauI GCSGC 3 cut(s) 26, 64, 84
TfiI GAWTC 5 cut(s) 365, 605, 677, 1427, 1591
Tru1I TTAA 6 cut(s) 249, 615, 665, 827, 881, 1654
Tru9I TTAA 6 cut(s) 249, 615, 665, 827, 881, 1654
TscAI CASTG 3 cut(s) 615, 676, 1285
TseFI GTSAC 4 cut(s) 44, 208, 502, 845
TseI GCWGC 3 cut(s) 15, 132, 1481
Tsp45I GTSAC 4 cut(s) 44, 208, 502, 845
TspRI CASTG 3 cut(s) 615, 676, 1285
Tth111I GACNNNGTC 1 cut(s) 31
Vha464I CTTAAG 1 cut(s) 826
VneI GTGCAC 1 cut(s) 1143
VpaK11BI GGWCC 2 cut(s) 545, 1636
XapI RAATTY 6 cut(s) 593, 715, 1015, 1102, 1344, 1553
XceI RCATGY 1 cut(s) 1239
XhoI CTCGAG 1 cut(s) 1109
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 3 cut(s) 318, 474, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.