Rh3DG066400

BAH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005028
Physical Location & Seq
Reverse (-)
4469681 .. 4471687
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG066400.1

Sequence Viewer

Length: 303 bp
ATGCCCTGGCAAGAGAGAATGCAAGCTGCACACGAGCAAGGAACCCTCATTTTGCTTCAGAATTTGGATCCAGCTTACACGTCAGCAGAAGTGGAGGAGATTACAAAGGAGACATGGTTGCTCACCGAGGAAGGGAAGCCATATGCTGTTCATGGAACGCCAGAAGTGCGGCCTCTCATGAAGCTCTCAACGTTATTGACTCGCAACCATGTCTTCTTGCTACTTGTCGATTTTGCAGGAGATTACAAAGGAGACATGGTTGCTCACCGAGGAAGGGAAGCCCAGAAGTGCGGCCTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

100

Amino Acids

11.32

Weight (kDa)

5.48

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 169, 291
AclI AACGTT 1 cut(s) 191
AclWI GGATC 2 cut(s) 62, 75
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 132, 274
AflIII ACRYGT 1 cut(s) 78
AjiI CACGTC 1 cut(s) 81
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 3 cut(s) 26, 74, 184
AluI AGCT 3 cut(s) 26, 74, 184
Alw26I GTCTC 2 cut(s) 104, 246
AlwI GGATC 2 cut(s) 62, 75
AoxI GGCC 2 cut(s) 170, 292
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 115, 257
BamHI GGATCC 1 cut(s) 67
BauI CACGAG 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 2 cut(s) 104, 246
BisI GCNGC 3 cut(s) 27, 170, 292
BlsI GCNGC 3 cut(s) 28, 171, 293
Bme1390I CCNGG 1 cut(s) 7
BmgBI CACGTC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 43, 69
BmrFI CCNGG 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 205
BsaJI CCNNGG 3 cut(s) 5, 126, 268
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 243, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 274
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 3 cut(s) 5, 126, 268
BseLI CCNNNNNNNGG 2 cut(s) 132, 274
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 12
BshFI GGCC 2 cut(s) 172, 294
BslI CCNNNNNNNGG 2 cut(s) 132, 274
BsmAI GTCTC 2 cut(s) 104, 246
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 2 cut(s) 172, 294
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 2 cut(s) 169, 291
BspANI GGCC 2 cut(s) 172, 294
BspHI TCATGA 2 cut(s) 177, 299
BspLI GGNNCC 2 cut(s) 43, 69
BspPI GGATC 2 cut(s) 62, 75
BssECI CCNNGG 3 cut(s) 5, 126, 268
BssMI GATC 1 cut(s) 67
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 24
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 2 cut(s) 104, 246
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstV1I GCAGC 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 2 cut(s) 172, 294
BtrI CACGTC 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 24
CciI TCATGA 2 cut(s) 177, 299
CviAII CATG 6 cut(s) 114, 152, 178, 209, 256, 300
CviJI RGCY 7 cut(s) 26, 74, 139, 172, 184, 281, 294
CviKI_1 RGCY 7 cut(s) 26, 74, 139, 172, 184, 281, 294
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 5
FaeI CATG 6 cut(s) 117, 155, 181, 212, 259, 303
FaiI YATR 8 cut(s) 115, 142, 144, 153, 179, 210, 257, 301
FatI CATG 6 cut(s) 113, 151, 177, 208, 255, 299
FauNDI CATATG 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 27, 170, 292
Fsp4HI GCNGC 3 cut(s) 27, 170, 292
GluI GCNGC 3 cut(s) 27, 170, 292
HaeIII GGCC 2 cut(s) 172, 294
Hin1II CATG 6 cut(s) 117, 155, 181, 212, 259, 303
HinfI GANTC 1 cut(s) 199
HphI GGTGA 2 cut(s) 115, 257
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 2 cut(s) 178, 300
HpyAV CCTTC 2 cut(s) 125, 267
HpyCH4IV ACGT 2 cut(s) 80, 191
HpyCH4V TGCA 3 cut(s) 22, 29, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpySE526I ACGT 2 cut(s) 80, 191
Hsp92II CATG 6 cut(s) 117, 155, 181, 212, 259, 303
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 5 cut(s) 19, 84, 174, 222, 296
Lsp1109I GCAGC 1 cut(s) 13
MaeII ACGT 2 cut(s) 80, 191
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 205
MflI RGATCY 1 cut(s) 67
MluCI AATT 1 cut(s) 61
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 5 cut(s) 56, 88, 121, 183, 263
MspR9I CCNGG 1 cut(s) 7
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeI CATATG 1 cut(s) 142
NdeII GATC 1 cut(s) 67
NlaIII CATG 6 cut(s) 117, 155, 181, 212, 259, 303
NlaIV GGNNCC 2 cut(s) 43, 69
PagI TCATGA 2 cut(s) 177, 299
PctI GAATGC 1 cut(s) 24
PkrI GCNGC 3 cut(s) 28, 171, 293
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp1406I AACGTT 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 43, 69
PsuI RGATCY 1 cut(s) 67
SatI GCNGC 3 cut(s) 27, 170, 292
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 7
SetI ASST 5 cut(s) 28, 76, 83, 186, 194
Sse9I AATT 1 cut(s) 61
SsiI CCGC 2 cut(s) 169, 291
StyD4I CCNGG 1 cut(s) 5
TaiI ACGT 2 cut(s) 83, 194
TaqI TCGA 1 cut(s) 228
TasI AATT 1 cut(s) 61
TauI GCSGC 2 cut(s) 172, 294
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 140, 194
XapI RAATTY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.