Rh7BG276000

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005028
Physical Location & Seq
Reverse (-)
25648896 .. 25651850
2955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG276000.1

Sequence Viewer

Length: 525 bp
ATGCAGGTTCGTGCACTTCAGCGGTTAGGGAGCCGTTTTGAAAATGTGTCTGGACATGAGAGGTCTTGTATATTATCTGGTCAGCAGAGAACCGGTCGGTGTACATGTCGTTCAAGTAACCGAGATACCCATCCAAATGATAACAGCAGTGCTAGGGCAAGCATATCCCGAATTGTTATGTTAGCTGAGGCTTTGTTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCCTCCCGACCTTCTGTATCTTCAATTGGATCTGTTCCTGCACCTAATGAAGTTGTAGAATCTTTGCCTGTCAAATTATTTTCCAAGTTGCAAAAACATCAGCATGAAGAGGCTGCACAATGCTACATATGCCTTGTGGAGTATGAAGAAGGAGATGAAATGCGGATACTGCCTTGTAATCATGAATTTCATAAAGCTTGTATTGACAAGTGGCTCAAGGAGATTCACAGGGTATGCCCGCTTTGTCGTCGGGATATCTGCAGATCAGACCAGCCCGCAGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

174

Amino Acids

19.74

Weight (kDa)

6.7

Isoelectric Point (pI)

62.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 119 - 162 2.3e-14 Ring finger domain
zf-RING_11 PF17123 119 - 147 8.3e-11 RING-like zinc finger
zf-rbx1 PF12678 119 - 162 5.3e-09 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 119 - 161 3.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 120 - 161 1.8e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 120 - 159 4.6e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 22, 400, 476, 513
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 2 cut(s) 213, 422
AfaI GTAC 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 104
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 3 cut(s) 41, 114, 261
AluBI AGCT 2 cut(s) 185, 434
AluI AGCT 2 cut(s) 185, 434
Alw21I GWGCWC 1 cut(s) 16
Alw44I GTGCAC 1 cut(s) 12
AlwI GGATC 1 cut(s) 274
ApaLI GTGCAC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 2 cut(s) 213, 422
AsiGI ACCGGT 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 16
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 18
BciVI GTATCC 1 cut(s) 396
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 496
BfuI GTATCC 1 cut(s) 396
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 437
BsaBI GATNNNNATC 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 92
Bse8I GATNNNNATC 1 cut(s) 129
BseGI GGATG 2 cut(s) 130, 214
BseJI GATNNNNATC 1 cut(s) 129
BseMII CTCAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 1 cut(s) 337
BsgI GTGCAG 2 cut(s) 261, 336
Bsh1285I CGRYCG 1 cut(s) 97
BshTI ACCGGT 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 101
Bsp143I GATC 2 cut(s) 266, 500
BspACI CCGC 4 cut(s) 22, 400, 476, 513
BspCNI CTCAG 1 cut(s) 178
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 500
BspPI GGATC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 92
BsrGI TGTACA 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 92
BssMI GATC 2 cut(s) 266, 500
Bst6I CTCTTC 1 cut(s) 339
BstAUI TGTACA 1 cut(s) 101
BstC8I GCNNGC 3 cut(s) 160, 476, 513
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 130, 214
BstKTI GATC 2 cut(s) 269, 503
BstMBI GATC 2 cut(s) 266, 500
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 366, 406
BstNSI RCATGY 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 496
BstSLI GKGCMC 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuI GTATCC 1 cut(s) 396
BtsCI GGATG 2 cut(s) 130, 214
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 154
Cac8I GCNNGC 3 cut(s) 160, 476, 513
CciI TCATGA 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 92
Csp6I GTAC 1 cut(s) 102
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 4 cut(s) 56, 105, 341, 419
CviJI RGCY 7 cut(s) 33, 185, 191, 350, 434, 451, 511
CviKI_1 RGCY 7 cut(s) 33, 185, 191, 350, 434, 451, 511
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 268, 502
DpnII GATC 2 cut(s) 266, 500
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco32I GATATC 1 cut(s) 493
EcoRV GATATC 1 cut(s) 493
FaeI CATG 4 cut(s) 59, 108, 344, 422
FatI CATG 4 cut(s) 55, 104, 340, 418
FauI CCCGC 2 cut(s) 483, 520
FauNDI CATATG 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 2 cut(s) 117, 221
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 1 cut(s) 153
GluI GCNGC 1 cut(s) 351
HapII CCGG 1 cut(s) 93
Hin1II CATG 4 cut(s) 59, 108, 344, 422
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 2 cut(s) 296, 460
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 14, 102
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 6 cut(s) 51, 168, 206, 243, 419, 488
Hpy8I GTNNAC 2 cut(s) 14, 102
Hpy99I CGWCG 1 cut(s) 489
HpyAV CCTTC 2 cut(s) 258, 380
HpyCH4V TGCA 6 cut(s) 4, 14, 278, 328, 353, 498
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 406
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 4 cut(s) 59, 108, 344, 422
Kzo9I GATC 2 cut(s) 266, 500
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 9 cut(s) 36, 63, 106, 191, 233, 288, 318, 451, 521
Lsp1109I GCAGC 1 cut(s) 337
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 268, 502
MboI GATC 2 cut(s) 266, 500
MboII GAAGA 3 cut(s) 249, 356, 395
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 5 cut(s) 171, 213, 261, 311, 422
MnlI CCTC 5 cut(s) 54, 181, 193, 250, 340
MslI CAYNNNNRTG 2 cut(s) 135, 339
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 366, 406
NdeI CATATG 1 cut(s) 365
NdeII GATC 2 cut(s) 266, 500
NlaIII CATG 4 cut(s) 59, 108, 344, 422
NlaIV GGNNCC 1 cut(s) 32
NspI RCATGY 1 cut(s) 108
PagI TCATGA 1 cut(s) 418
PciI ACATGT 1 cut(s) 104
PfeI GAWTC 2 cut(s) 296, 460
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 1 cut(s) 352
PscI ACATGT 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 32
PsrI GAACNNNNNNTAC 2 cut(s) 94, 126
PstI CTGCAG 1 cut(s) 500
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 2 cut(s) 135, 339
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 2 cut(s) 266, 500
SduI GDGCHC 1 cut(s) 16
SetI ASST 7 cut(s) 9, 65, 187, 204, 250, 283, 436
SfcI CTRYAG 1 cut(s) 496
SmiMI CAYNNNNRTG 2 cut(s) 135, 339
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 5 cut(s) 171, 213, 261, 311, 422
SsiI CCGC 4 cut(s) 22, 400, 476, 513
SspMI CTAG 1 cut(s) 153
TasI AATT 5 cut(s) 171, 213, 261, 311, 422
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 2 cut(s) 296, 460
TscAI CASTG 1 cut(s) 154
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 7 cut(s) 225, 300, 357, 396, 408, 416, 435
TspRI CASTG 1 cut(s) 154
VneI GTGCAC 1 cut(s) 12
XapI RAATTY 2 cut(s) 213, 422
XceI RCATGY 1 cut(s) 108
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.