Rmu_ssc0000134.1_g000013

RING-like zinc finger

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000134.1
Physical Location & Seq
Reverse (-)
53736 .. 58735
5000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000134.1_g000013.1.cds

Sequence Viewer

Length: 1656 bp
atgggatcgagcggcagcaaagccacgtcgtcgtcgtcgtcgtccggcgatagtggtcggaggcgacgatccaaatccatcgccggcagagtgttccgttcgtcttgtctcggaatcaaatctcgatctcgccacgccgacgatgacgagcaggtctgtgaacatcggaacaaaggaaatagaattattgctccttgtacaaaccagaccgtcacagagcaggatcgtgcaaaggagtatttcggaaaggttaacattgaacaatctgatgaaatgccttgtatatcttcaaacgctgaactcaatgaatggggtgatgctagcatcactgatactgtctccagaactggtcccggctctgctcaagattctgctgctccatctttgaatccttcaagtcgtttcctttcccgttttagttttgttcctggcaatgtaagcttcaggctaagccgagcaaccagtttggggtcatccgggtcttatcctgtatcatcaacaagtgtcacagtattgaataatgatgatgacctacgtctgcaaacgggaccttctgccagtttggttggtagagatgaaagtcgagaaggttgtgaattccttccagaatcactggttaataggactcctacacatttttttgaagacacttctggtagtttaggattaaataatgtggaatctggtttttctgacaatttgcaagataatcagacacattcttctatacaagatggcagaaatgctaatggtagaataataggggtacttaacagatacccaggatctcaggaacctgtagaacgaaatgttcgttttagcagaaccttaagtgttgggagacttcgtgacagggttcttcgtcgatcatctttgtctgatttagcattttcttctttgcaacaagagggagaagtgagagatacaaatcagggggatgatacagggacattggcacctgaaagtagtgttgtaaatttgcaaaatgggtctagttatcctccatccaatatgtcgaattcattgtttagcaaccaagactatgaggcggaaacaataagaccgagagaagccaggtatcatgatctacttgaacacagatcaaatttcctcgagcggaggagaagaattagatctcaggttcgtgcacttcagcggttagggagccgttttgaaaatgtgtctggacatgagaggtcttgtatattatctggtcagcagagaaccggtcggtgcacatgtcgttcaagtaaccgagatgcccatccaaatgataacagcagtgctagggcaagcatatcccgaattgttatgttggctgaggctttgtttgaggttctggatgaaattcaccagcaatctgtggttttatcctcccgaccttctgtttcttcaattggatctgttcctgcacctaatgaagttgtagaatctttgcctgtcaaattattttccaagttgcaaaaacatcagcatgaagaggctgcgcaatgctacatatgccttgtggagtatgaagaaggagatgaaatgcggatactgccttgtaatcatgaatttcataaagcttgtattgacaagtggctcaaggagattcacagggtatgcccactttgtcgccgggatatctgcagatcgtcctctgaagagaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

551

Amino Acids

61.06

Weight (kDa)

6.72

Isoelectric Point (pI)

64.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
Acc16I TGCGCA 1 cut(s) 1488
Acc36I ACCTGC 1 cut(s) 142
AccB1I GGYRCC 1 cut(s) 955
AccBSI CCGCTC 2 cut(s) 12, 1117
AciI CCGC 5 cut(s) 12, 1049, 1117, 1156, 1534
AclWI GGATC 5 cut(s) 13, 63, 231, 793, 1408
AcsI RAATTY 6 cut(s) 596, 976, 1018, 1105, 1347, 1556
AcuI CTGAAG 2 cut(s) 427, 1136
AfaI GTAC 2 cut(s) 199, 768
AfiI CCNNNNNNNGG 1 cut(s) 468
AflII CTTAAG 1 cut(s) 829
AflIII ACRYGT 1 cut(s) 1238
AgeI ACCGGT 1 cut(s) 1226
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 3 cut(s) 427, 781, 1073
AluBI AGCT 2 cut(s) 441, 1568
AluI AGCT 2 cut(s) 441, 1568
Alw21I GWGCWC 2 cut(s) 1150, 1238
Alw26I GTCTC 3 cut(s) 113, 343, 835
Alw44I GTGCAC 2 cut(s) 1146, 1234
AlwI GGATC 5 cut(s) 13, 63, 231, 793, 1408
Ama87I CYCGRG 1 cut(s) 1112
ApaLI GTGCAC 2 cut(s) 1146, 1234
ApeKI GCWGC 3 cut(s) 15, 374, 1484
ApoI RAATTY 6 cut(s) 596, 976, 1018, 1105, 1347, 1556
AsiGI ACCGGT 1 cut(s) 1226
Asp700I GAANNNNTTC 1 cut(s) 600
AspLEI GCGC 1 cut(s) 1489
AspS9I GGNCC 2 cut(s) 350, 548
AsuC2I CCSGG 3 cut(s) 354, 478, 1622
AsuHPI GGTGA 2 cut(s) 326, 1343
AsuNHI GCTAGC 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 1112
AvaII GGWCC 2 cut(s) 350, 548
BaeGI GKGCMC 2 cut(s) 1150, 1238
BanI GGYRCC 1 cut(s) 955
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 1150, 1238
BbvCI CCTCAGC 1 cut(s) 1320
BbvI GCAGC 3 cut(s) 27, 361, 1471
BccI CCATC 5 cut(s) 86, 388, 728, 1012, 1272
BceAI ACGGC 1 cut(s) 1152
BciT130I CCWGG 3 cut(s) 429, 783, 1075
BciVI GTATCC 1 cut(s) 1530
BcnI CCSGG 3 cut(s) 354, 478, 1622
BcoDI GTCTC 3 cut(s) 113, 343, 835
BfaI CTAG 3 cut(s) 321, 993, 1287
BfmI CTRYAG 2 cut(s) 798, 1630
BfrI CTTAAG 1 cut(s) 829
BfuAI ACCTGC 1 cut(s) 142
BfuI GTATCC 1 cut(s) 1530
BglII AGATCT 1 cut(s) 1133
BisI GCNGC 4 cut(s) 13, 16, 375, 1485
BlpI GCTNAGC 1 cut(s) 449
BlsI GCNGC 4 cut(s) 14, 17, 376, 1486
Bme1390I CCNGG 6 cut(s) 354, 429, 478, 783, 1075, 1622
Bme18I GGWCC 2 cut(s) 350, 548
BmeT110I CYCGRG 1 cut(s) 1112
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 350, 548
BmiI GGNNCC 5 cut(s) 352, 549, 795, 957, 1166
BmrFI CCNGG 6 cut(s) 354, 429, 478, 783, 1075, 1622
BmsI GCATC 3 cut(s) 307, 333, 1249
BmtI GCTAGC 1 cut(s) 324
BoxI GACNNNNGTC 1 cut(s) 534
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 325
Bpu10I CCTNAGC 1 cut(s) 1320
Bpu1102I GCTNAGC 1 cut(s) 449
BpuEI CTTGAG 2 cut(s) 348, 1571
BpuMI CCSGG 3 cut(s) 354, 478, 1622
BsaBI GATNNNNATC 3 cut(s) 73, 927, 1263
BsaJI CCNNGG 1 cut(s) 781
BsaWI WCCGGW 1 cut(s) 1226
BsaXI ACNNNNNCTCC 2 cut(s) 832, 862
Bsc4I CCNNNNNNNGG 1 cut(s) 468
Bse118I RCCGGY 2 cut(s) 83, 1226
Bse1I ACTGG 4 cut(s) 352, 462, 558, 618
Bse3DI GCAATG 2 cut(s) 439, 1496
Bse8I GATNNNNATC 3 cut(s) 73, 927, 1263
BseBI CCWGG 3 cut(s) 429, 783, 1075
BseDI CCNNGG 1 cut(s) 781
BseGI GGATG 5 cut(s) 473, 943, 1004, 1264, 1348
BseJI GATNNNNATC 3 cut(s) 73, 927, 1263
BseLI CCNNNNNNNGG 1 cut(s) 468
BseMI GCAATG 2 cut(s) 439, 1496
BseMII CTCAG 3 cut(s) 803, 1151, 1311
BseNI ACTGG 4 cut(s) 352, 462, 558, 618
BseRI GAGGAG 1 cut(s) 1135
BseSI GKGCMC 2 cut(s) 1150, 1238
BseXI GCAGC 3 cut(s) 27, 361, 1471
BsgI GTGCAG 1 cut(s) 1395
Bsh1285I CGRYCG 1 cut(s) 1231
BshNI GGYRCC 1 cut(s) 955
BshTI ACCGGT 1 cut(s) 1226
BsiEI CGRYCG 1 cut(s) 1231
BsiHKAI GWGCWC 2 cut(s) 1150, 1238
BsiHKCI CYCGRG 1 cut(s) 1112
BsiSI CCGG 6 cut(s) 45, 84, 354, 477, 1227, 1621
BslFI GGGAC 3 cut(s) 336, 561, 961
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 3 cut(s) 113, 343, 835
BsmFI GGGAC 3 cut(s) 336, 561, 961
BsoBI CYCGRG 1 cut(s) 1112
Bsp1286I GDGCHC 2 cut(s) 1150, 1238
Bsp1407I TGTACA 1 cut(s) 197
Bsp1720I GCTNAGC 1 cut(s) 449
BspACI CCGC 5 cut(s) 12, 1049, 1117, 1156, 1534
BspCNI CTCAG 3 cut(s) 802, 1150, 1312
BspHI TCATGA 2 cut(s) 1081, 1552
BspLI GGNNCC 5 cut(s) 352, 549, 795, 957, 1166
BspMAI CTGCAG 1 cut(s) 1634
BspMI ACCTGC 1 cut(s) 142
BspOI GCTAGC 1 cut(s) 324
BspPI GGATC 5 cut(s) 13, 63, 231, 793, 1408
BspT107I GGYRCC 1 cut(s) 955
BspTI CTTAAG 1 cut(s) 829
BsrBI CCGCTC 2 cut(s) 12, 1117
BsrDI GCAATG 2 cut(s) 439, 1496
BsrFI RCCGGY 2 cut(s) 83, 1226
BsrGI TGTACA 1 cut(s) 197
BsrI ACTGG 4 cut(s) 352, 462, 558, 618
BssAI RCCGGY 2 cut(s) 83, 1226
BssECI CCNNGG 1 cut(s) 781
Bst2UI CCWGG 3 cut(s) 429, 783, 1075
Bst4CI ACNGT 3 cut(s) 211, 337, 511
Bst6I CTCTTC 2 cut(s) 1473, 1641
BstAFI CTTAAG 1 cut(s) 829
BstAUI TGTACA 1 cut(s) 197
BstC8I GCNNGC 3 cut(s) 85, 322, 1294
BstDEI CTNAG 4 cut(s) 449, 789, 1137, 1320
BstF5I GGATG 5 cut(s) 473, 943, 1004, 1264, 1348
BstHHI GCGC 1 cut(s) 1489
BstMAI GTCTC 3 cut(s) 113, 343, 835
BstMCI CGRYCG 1 cut(s) 1231
BstMWI GCNNNNNNNGC 3 cut(s) 438, 1500, 1540
BstNI CCWGG 3 cut(s) 429, 783, 1075
BstNSI RCATGY 1 cut(s) 1242
BstPAI GACNNNNGTC 1 cut(s) 534
BstSCI CCNGG 6 cut(s) 352, 427, 476, 781, 1073, 1620
BstSFI CTRYAG 2 cut(s) 798, 1630
BstSLI GKGCMC 2 cut(s) 1150, 1238
BstV1I GCAGC 3 cut(s) 27, 361, 1471
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 3 cut(s) 785, 1133, 1400
BstYI RGATCY 3 cut(s) 785, 1133, 1400
BsuI GTATCC 1 cut(s) 1530
BtgZI GCGATG 1 cut(s) 64
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 5 cut(s) 473, 943, 1004, 1264, 1348
BtsI GCAGTG 1 cut(s) 1288
BtsIMutI CAGTG 3 cut(s) 327, 611, 1288
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 3 cut(s) 85, 322, 1294
CciI TCATGA 2 cut(s) 1081, 1552
CfoI GCGC 1 cut(s) 1489
Cfr10I RCCGGY 2 cut(s) 83, 1226
Cfr13I GGNCC 2 cut(s) 350, 548
Csp6I GTAC 2 cut(s) 198, 767
CspAI ACCGGT 1 cut(s) 1226
CviAII CATG 5 cut(s) 1082, 1190, 1239, 1475, 1553
CviQI GTAC 2 cut(s) 198, 767
DdeI CTNAG 4 cut(s) 449, 789, 1137, 1320
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 1473, 1641
EarI CTCTTC 2 cut(s) 1473, 1641
EciI GGCGGA 1 cut(s) 1064
Eco32I GATATC 1 cut(s) 1627
Eco47I GGWCC 2 cut(s) 350, 548
Eco57I CTGAAG 2 cut(s) 427, 1136
Eco88I CYCGRG 1 cut(s) 1112
EcoO109I RGGNCCY 1 cut(s) 548
EcoRI GAATTC 2 cut(s) 596, 1018
EcoRII CCWGG 3 cut(s) 427, 781, 1073
EcoRV GATATC 1 cut(s) 1627
FaeI CATG 5 cut(s) 1085, 1193, 1242, 1478, 1556
FaqI GGGAC 3 cut(s) 336, 561, 961
FatI CATG 5 cut(s) 1081, 1189, 1238, 1474, 1552
FauNDI CATATG 1 cut(s) 1499
Fnu4HI GCNGC 4 cut(s) 13, 16, 375, 1485
FokI GGATG 5 cut(s) 460, 950, 991, 1251, 1355
Fsp4HI GCNGC 4 cut(s) 13, 16, 375, 1485
FspBI CTAG 3 cut(s) 321, 993, 1287
FspI TGCGCA 1 cut(s) 1488
GlaI GCGC 1 cut(s) 1488
GluI GCNGC 4 cut(s) 13, 16, 375, 1485
GsuI CTGGAG 1 cut(s) 325
HapII CCGG 6 cut(s) 45, 84, 354, 477, 1227, 1621
HhaI GCGC 1 cut(s) 1489
Hin1II CATG 5 cut(s) 1085, 1193, 1242, 1478, 1556
Hin6I GCGC 1 cut(s) 1487
HinP1I GCGC 1 cut(s) 1487
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 2 cut(s) 439, 1566
HinfI GANTC 8 cut(s) 114, 368, 388, 608, 625, 680, 1430, 1594
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 6 cut(s) 45, 84, 354, 477, 1227, 1621
HphI GGTGA 2 cut(s) 326, 1343
Hpy166II GTNNAC 4 cut(s) 161, 253, 1148, 1236
Hpy188I TCNGA 9 cut(s) 60, 113, 168, 245, 268, 694, 714, 880, 1645
Hpy8I GTNNAC 4 cut(s) 161, 253, 1148, 1236
Hpy99I CGWCG 8 cut(s) 31, 34, 37, 40, 43, 69, 143, 867
HpyAV CCTTC 6 cut(s) 402, 561, 581, 611, 1392, 1514
HpyCH4III ACNGT 3 cut(s) 211, 337, 511
HpyCH4IV ACGT 2 cut(s) 26, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 438, 1500, 1540
HpyF3I CTNAG 4 cut(s) 449, 789, 1137, 1320
HpySE526I ACGT 2 cut(s) 26, 535
Hsp92II CATG 5 cut(s) 1085, 1193, 1242, 1478, 1556
HspAI GCGC 1 cut(s) 1487
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
KspAI GTTAAC 1 cut(s) 253
LmnI GCTCC 3 cut(s) 196, 382, 1164
Lsp1109I GCAGC 3 cut(s) 27, 361, 1471
LweI GCATC 3 cut(s) 307, 333, 1249
MaeI CTAG 3 cut(s) 321, 993, 1287
MaeII ACGT 2 cut(s) 26, 535
MaeIII GTNAC 4 cut(s) 211, 505, 848, 1250
MbiI CCGCTC 2 cut(s) 12, 1117
MboII GAAGA 9 cut(s) 279, 656, 714, 851, 885, 1137, 1383, 1490, 1529
MfeI CAATTG 1 cut(s) 1395
MflI RGATCY 3 cut(s) 785, 1133, 1400
MhlI GDGCHC 2 cut(s) 1150, 1238
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 1 cut(s) 38
MroNI GCCGGC 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 600
MseI TTAA 5 cut(s) 252, 618, 668, 771, 830
MslI CAYNNNNRTG 2 cut(s) 1269, 1473
MspA1I CMGCKG 1 cut(s) 1156
MspCI CTTAAG 1 cut(s) 829
MspI CCGG 6 cut(s) 45, 84, 354, 477, 1227, 1621
MspR9I CCNGG 6 cut(s) 354, 429, 478, 783, 1075, 1622
MunI CAATTG 1 cut(s) 1395
MvaI CCWGG 3 cut(s) 429, 783, 1075
MwoI GCNNNNNNNGC 3 cut(s) 438, 1500, 1540
NaeI GCCGGC 1 cut(s) 85
NciI CCSGG 3 cut(s) 354, 478, 1622
NdeI CATATG 1 cut(s) 1499
NgoMIV GCCGGC 1 cut(s) 83
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 5 cut(s) 1085, 1193, 1242, 1478, 1556
NlaIV GGNNCC 5 cut(s) 352, 549, 795, 957, 1166
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 3 cut(s) 211, 505, 848
NsbI TGCGCA 1 cut(s) 1488
NspI RCATGY 1 cut(s) 1242
PaeR7I CTCGAG 1 cut(s) 1112
PagI TCATGA 2 cut(s) 1081, 1552
PciI ACATGT 1 cut(s) 1238
PcsI WCGNNNNNNNCGW 5 cut(s) 32, 35, 38, 64, 811
PdiI GCCGGC 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 7 cut(s) 114, 368, 388, 608, 680, 1430, 1594
PinAI ACCGGT 1 cut(s) 1226
PkrI GCNGC 4 cut(s) 14, 17, 376, 1486
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
PpuMI RGGWCCY 1 cut(s) 548
PscI ACATGT 1 cut(s) 1238
PshAI GACNNNNGTC 1 cut(s) 534
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 3 cut(s) 427, 781, 1073
PspGI CCWGG 3 cut(s) 427, 781, 1073
PspN4I GGNNCC 5 cut(s) 352, 549, 795, 957, 1166
PspPI GGNCC 2 cut(s) 350, 548
PspPPI RGGWCCY 1 cut(s) 548
PspXI VCTCGAGB 1 cut(s) 1112
PstI CTGCAG 1 cut(s) 1634
PsuI RGATCY 3 cut(s) 785, 1133, 1400
RsaI GTAC 2 cut(s) 199, 768
RsaNI GTAC 2 cut(s) 198, 767
RseI CAYNNNNRTG 2 cut(s) 1269, 1473
SaqAI TTAA 5 cut(s) 252, 618, 668, 771, 830
SatI GCNGC 4 cut(s) 13, 16, 375, 1485
Sau96I GGNCC 2 cut(s) 350, 548
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 6 cut(s) 354, 429, 478, 783, 1075, 1622
SduI GDGCHC 2 cut(s) 1150, 1238
SfaNI GCATC 3 cut(s) 307, 333, 1249
SfcI CTRYAG 2 cut(s) 798, 1630
Sfr274I CTCGAG 1 cut(s) 1112
SinI GGWCC 2 cut(s) 350, 548
SlaI CTCGAG 1 cut(s) 1112
SmiMI CAYNNNNRTG 2 cut(s) 1269, 1473
SmlI CTYRAG 4 cut(s) 363, 829, 1112, 1586
SmoI CTYRAG 4 cut(s) 363, 829, 1112, 1586
SsiI CCGC 5 cut(s) 12, 1049, 1117, 1156, 1534
SspMI CTAG 3 cut(s) 321, 993, 1287
StyD4I CCNGG 6 cut(s) 352, 427, 476, 781, 1073, 1620
TaaI ACNGT 3 cut(s) 211, 337, 511
TaiI ACGT 2 cut(s) 29, 538
TaqI TCGA 6 cut(s) 8, 124, 583, 865, 1016, 1113
TaqII GACCGA 1 cut(s) 1078
TatI WGTACW 1 cut(s) 197
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 7 cut(s) 114, 368, 388, 608, 680, 1430, 1594
Tru1I TTAA 5 cut(s) 252, 618, 668, 771, 830
Tru9I TTAA 5 cut(s) 252, 618, 668, 771, 830
TscAI CASTG 3 cut(s) 334, 618, 1288
TseFI GTSAC 3 cut(s) 211, 505, 848
TseI GCWGC 3 cut(s) 15, 374, 1484
Tsp45I GTSAC 3 cut(s) 211, 505, 848
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 3 cut(s) 334, 618, 1288
Vha464I CTTAAG 1 cut(s) 829
VneI GTGCAC 2 cut(s) 1146, 1234
VpaK11BI GGWCC 2 cut(s) 350, 548
XapI RAATTY 6 cut(s) 596, 976, 1018, 1105, 1347, 1556
XceI RCATGY 1 cut(s) 1242
XhoI CTCGAG 1 cut(s) 1112
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 3 cut(s) 321, 993, 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.