Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017495.1

Orthogroup ID

OG0005028

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1290

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017495.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 724 bp

tattgaataatgatgatgacctacatctgcaaacgggaccttctaccagtttggttggtagagatgaaagtcgagaaggttgtgaattccttccagaatcactggttaataggactcctacacatttttttgaagacacttctggtagtttaggattaaataatgtggaatctggtttttctgacaatttgcaagataatcagacacattcttctatacaagatggcagaaatgctaatggtagaataataggggtacttaacagatacccaggatctcaggaacctgtagaacgaaatgttcgttttagcagaaccttaagtgttgggagacttcgtgacagggttcttcgtcgatcatctttgtctgatttagcattttcttctttgcaacaagagggagaagtgagagatacaaatcagggggatgatacagggacattggcacctgaaagtagtgtagtaaatttgcaaaatgggtctagttatcctccatccaatatgtcgaattcattgtttagcaaccaagactatgaggcggaaacaataagaccgagagaagccaggtatcatgatctacttgaacacagatcaaatttcctcgagcggaggagaagaattagatctcaggttcgtgcacttcagcggttagggagccgttttgaaaatgtgtctggacatgagaggtcttgtatattatctggtcagcagagaaccggtcggtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

240

Amino Acids

27.03

Weight (kDa)

6.12

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45290 AT5G45290
fragaria_vesca	FvH4_5g24480
malus_domestica	MD06G1013000.v1.1 MD16G1287000.v1.1
prunus_persica	Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1
pyrus_communis	pycom06g01080 pycom16g25680
rosa_chinensis	RchiOBHm_Chr7g0214911
rosa_laevigata	RLG00000002709
rosa_multiflora	Rmu_sc0002308.1_g000009 Rmu_sc0017494.1_g000001 Rmu_sc0017495.1_g000001 Rmu_ssc0000134.1_g000013
rosa_roxburghii	Rroxscaffold_3G00244890
rosa_rugosa	Rorug07G0148100.1 Rorug07G0148200
rosa_samantha	Rh1BG196000 Rh1DG224000 Rh2CG336300 Rh2CG349800 Rh3DG066400 Rh7AG285200 Rh7BG276000 Rh7BG276900 Rh7CG304300 Rh7DG288800
rosa_wichuraiana	Rw7G024350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	444
AccBSI	CCGCTC	1 cut(s)	606
AciI	CCGC	3 cut(s)	538, 606, 645
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	4 cut(s)	85, 465, 507, 594
AcuI	CTGAAG	1 cut(s)	625
AfaI	GTAC	1 cut(s)	257
AflII	CTTAAG	1 cut(s)	318
AgeI	ACCGGT	1 cut(s)	715
AgsI	TTSAA	4 cut(s)	6, 133, 583, 664
AjnI	CCWGG	2 cut(s)	270, 562
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	1 cut(s)	324
Alw44I	GTGCAC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	282
Ama87I	CYCGRG	1 cut(s)	601
ApaLI	GTGCAC	1 cut(s)	635
ApoI	RAATTY	4 cut(s)	85, 465, 507, 594
AsiGI	ACCGGT	1 cut(s)	715
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	639
BanI	GGYRCC	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	639
BccI	CCATC	2 cut(s)	217, 501
BceAI	ACGGC	1 cut(s)	641
BciT130I	CCWGG	2 cut(s)	272, 564
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	622
Bme1390I	CCNGG	2 cut(s)	272, 564
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	4 cut(s)	38, 284, 446, 655
BmrFI	CCNGG	2 cut(s)	272, 564
BpiI	GAAGAC	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	715
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	2 cut(s)	47, 107
Bse8I	GATNNNNATC	1 cut(s)	416
BseBI	CCWGG	2 cut(s)	272, 564
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	432, 493
BseJI	GATNNNNATC	1 cut(s)	416
BseMII	CTCAG	2 cut(s)	292, 640
BseNI	ACTGG	2 cut(s)	47, 107
BseRI	GAGGAG	1 cut(s)	624
BseSI	GKGCMC	1 cut(s)	639
Bsh1285I	CGRYCG	1 cut(s)	720
BshNI	GGYRCC	1 cut(s)	444
BshTI	ACCGGT	1 cut(s)	715
BsiEI	CGRYCG	1 cut(s)	720
BsiHKAI	GWGCWC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	716
BslFI	GGGAC	2 cut(s)	50, 450
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	2 cut(s)	50, 450
BsoBI	CYCGRG	1 cut(s)	601
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp143I	GATC	5 cut(s)	274, 355, 573, 589, 622
BspACI	CCGC	3 cut(s)	538, 606, 645
BspCNI	CTCAG	2 cut(s)	291, 639
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	4 cut(s)	38, 284, 446, 655
BspPI	GGATC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	444
BspTI	CTTAAG	1 cut(s)	318
BsrBI	CCGCTC	1 cut(s)	606
BsrFI	RCCGGY	1 cut(s)	715
BsrI	ACTGG	2 cut(s)	47, 107
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	5 cut(s)	274, 355, 573, 589, 622
Bst2UI	CCWGG	2 cut(s)	272, 564
BstAFI	CTTAAG	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	278, 626
BstF5I	GGATG	2 cut(s)	432, 493
BstKTI	GATC	5 cut(s)	277, 358, 576, 592, 625
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	5 cut(s)	274, 355, 573, 589, 622
BstMCI	CGRYCG	1 cut(s)	720
BstNI	CCWGG	2 cut(s)	272, 564
BstSCI	CCNGG	2 cut(s)	270, 562
BstSFI	CTRYAG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	639
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	2 cut(s)	274, 622
BstYI	RGATCY	2 cut(s)	274, 622
BtsCI	GGATG	2 cut(s)	432, 493
BtsIMutI	CAGTG	1 cut(s)	100
CciI	TCATGA	1 cut(s)	570
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	256
CspAI	ACCGGT	1 cut(s)	715
CviAII	CATG	2 cut(s)	571, 679
CviJI	RGCY	2 cut(s)	562, 656
CviKI_1	RGCY	2 cut(s)	562, 656
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	278, 626
DpnI	GATC	5 cut(s)	276, 357, 575, 591, 624
DpnII	GATC	5 cut(s)	274, 355, 573, 589, 622
EciI	GGCGGA	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	625
Eco88I	CYCGRG	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRI	GAATTC	2 cut(s)	85, 507
EcoRII	CCWGG	2 cut(s)	270, 562
FaeI	CATG	2 cut(s)	574, 682
FaiI	YATR	6 cut(s)	217, 502, 533, 572, 680, 694
FaqI	GGGAC	2 cut(s)	50, 450
FatI	CATG	2 cut(s)	570, 678
FokI	GGATG	2 cut(s)	439, 480
FspBI	CTAG	1 cut(s)	482
HapII	CCGG	1 cut(s)	716
Hin1II	CATG	2 cut(s)	574, 682
HinfI	GANTC	3 cut(s)	97, 114, 169
HpaII	CCGG	1 cut(s)	716
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	3 cut(s)	183, 203, 369
Hpy188III	TCNNGA	6 cut(s)	73, 94, 280, 337, 571, 674
Hpy8I	GTNNAC	1 cut(s)	637
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	3 cut(s)	50, 70, 100
HpyCH4V	TGCA	5 cut(s)	30, 192, 390, 471, 637
HpyF3I	CTNAG	2 cut(s)	278, 626
Hsp92II	CATG	2 cut(s)	574, 682
Kzo9I	GATC	5 cut(s)	274, 355, 573, 589, 622
LmnI	GCTCC	1 cut(s)	653
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	5 cut(s)	276, 357, 575, 591, 624
MbiI	CCGCTC	1 cut(s)	606
MboI	GATC	5 cut(s)	274, 355, 573, 589, 622
MboII	GAAGA	5 cut(s)	145, 203, 340, 374, 626
MflI	RGATCY	2 cut(s)	274, 622
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	6 cut(s)	85, 186, 465, 507, 594, 617
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	6 cut(s)	390, 500, 528, 602, 610, 677
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	4 cut(s)	107, 157, 260, 319
MspA1I	CMGCKG	1 cut(s)	645
MspCI	CTTAAG	1 cut(s)	318
MspI	CCGG	1 cut(s)	716
MspR9I	CCNGG	2 cut(s)	272, 564
MvaI	CCWGG	2 cut(s)	272, 564
NdeII	GATC	5 cut(s)	274, 355, 573, 589, 622
NlaIII	CATG	2 cut(s)	574, 682
NlaIV	GGNNCC	4 cut(s)	38, 284, 446, 655
NmuCI	GTSAC	1 cut(s)	337
PaeR7I	CTCGAG	1 cut(s)	601
PagI	TCATGA	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	97, 169
PinAI	ACCGGT	1 cut(s)	715
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	270, 562
PspGI	CCWGG	2 cut(s)	270, 562
PspN4I	GGNNCC	4 cut(s)	38, 284, 446, 655
PspPI	GGNCC	1 cut(s)	37
PspPPI	RGGWCCY	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	601
PsuI	RGATCY	2 cut(s)	274, 622
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	4 cut(s)	107, 157, 260, 319
Sau3AI	GATC	5 cut(s)	274, 355, 573, 589, 622
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	272, 564
SduI	GDGCHC	1 cut(s)	639
SetI	ASST	9 cut(s)	23, 42, 81, 288, 319, 450, 568, 632, 688
SfcI	CTRYAG	1 cut(s)	287
Sfr274I	CTCGAG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	601
SmlI	CTYRAG	2 cut(s)	318, 601
SmoI	CTYRAG	2 cut(s)	318, 601
Sse9I	AATT	6 cut(s)	85, 186, 465, 507, 594, 617
SsiI	CCGC	3 cut(s)	538, 606, 645
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	270, 562
TaqI	TCGA	4 cut(s)	72, 354, 505, 602
TaqII	GACCGA	1 cut(s)	567
TasI	AATT	6 cut(s)	85, 186, 465, 507, 594, 617
TfiI	GAWTC	2 cut(s)	97, 169
Tru1I	TTAA	4 cut(s)	107, 157, 260, 319
Tru9I	TTAA	4 cut(s)	107, 157, 260, 319
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	80, 500
TspRI	CASTG	1 cut(s)	107
Vha464I	CTTAAG	1 cut(s)	318
VneI	GTGCAC	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	4 cut(s)	85, 465, 507, 594
XhoI	CTCGAG	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.