Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017494.1

Orthogroup ID

OG0005028

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1471

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017494.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 955 bp

atgccttgtatatcttcaaacgctgaactcaatgaatggggtgatgctagcatcactgatactgtctccagaactggtcccggctctgctcaagattctgctgctccatctttgaatccttcaagtcgtttcctttcccgttttagttttgttcctggcaatgtaagcttcaggctaagccgagcaaccagtttggggtcatccgggtcttatcctgtatcatcaacaagtgtcacagtattgaataatgatgatgacctacgtctgcaaacgggaccttctgccagtttggttggtagagatgaaagtcgagaaggttgtgaattccttccagaatcactggttaataggactcctacacatttttttgaagacacttctggtagtttaggattaaataatgtggaatctggtttttctgacaatttgcaagataatcagacacattcttctatacaagatggcagaaatgctaatggtagaataataggggtacttaacagatacccaggatctcaggaacctgtagaacgaaatgttcgttttagcagaaccttaagtgttgggagacttcgtgacagggttcttcgtcgatcatctttgtctgatttagcattttcttctttgcaacaagagggagaagtgagagatacaaatcagggggatgatacagggacattggcacctgaaagtagtgtagtaaatttgcaaaatgggtctagttatcctccatccaatatgtcgaattcattgtttagcaaccaagactatgaggcggaaacaataagaccgagagaagccaggtatcatgatctacttgaacacagatcaaatttcctcgagcggaggagaagaattagatctcaggttcgtgcacttcagcggttagggagccgttttgaaaatgtgtctggacatgagaggtcttgtatattatctggtcagcagagaaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

318

Amino Acids

35.04

Weight (kDa)

6.02

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45290 AT5G45290
fragaria_vesca	FvH4_5g24480
malus_domestica	MD06G1013000.v1.1 MD16G1287000.v1.1
prunus_persica	Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1
pyrus_communis	pycom06g01080 pycom16g25680
rosa_chinensis	RchiOBHm_Chr7g0214911
rosa_laevigata	RLG00000002709
rosa_multiflora	Rmu_sc0002308.1_g000009 Rmu_sc0017494.1_g000001 Rmu_sc0017495.1_g000001 Rmu_ssc0000134.1_g000013
rosa_roxburghii	Rroxscaffold_3G00244890
rosa_rugosa	Rorug07G0148100.1 Rorug07G0148200
rosa_samantha	Rh1BG196000 Rh1DG224000 Rh2CG336300 Rh2CG349800 Rh3DG066400 Rh7AG285200 Rh7BG276000 Rh7BG276900 Rh7CG304300 Rh7DG288800
rosa_wichuraiana	Rw7G024350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	682
AccBSI	CCGCTC	1 cut(s)	844
AciI	CCGC	3 cut(s)	776, 844, 883
AclWI	GGATC	1 cut(s)	520
AcsI	RAATTY	4 cut(s)	323, 703, 745, 832
AcuI	CTGAAG	2 cut(s)	154, 863
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	1 cut(s)	195
AflII	CTTAAG	1 cut(s)	556
AgsI	TTSAA	7 cut(s)	18, 115, 123, 244, 371, 821, 902
AjnI	CCWGG	3 cut(s)	154, 508, 800
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
Alw21I	GWGCWC	1 cut(s)	877
Alw26I	GTCTC	2 cut(s)	70, 562
Alw44I	GTGCAC	1 cut(s)	873
AlwI	GGATC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	839
ApaLI	GTGCAC	1 cut(s)	873
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	4 cut(s)	323, 703, 745, 832
Asp700I	GAANNNNTTC	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	77, 275
AsuC2I	CCSGG	2 cut(s)	81, 205
AsuHPI	GGTGA	1 cut(s)	53
AsuNHI	GCTAGC	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	839
AvaII	GGWCC	2 cut(s)	77, 275
BaeGI	GKGCMC	1 cut(s)	877
BanI	GGYRCC	1 cut(s)	682
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	3 cut(s)	115, 455, 739
BceAI	ACGGC	1 cut(s)	879
BciT130I	CCWGG	3 cut(s)	156, 510, 802
BcnI	CCSGG	2 cut(s)	81, 205
BcoDI	GTCTC	2 cut(s)	70, 562
BfaI	CTAG	2 cut(s)	48, 720
BfmI	CTRYAG	1 cut(s)	525
BfrI	CTTAAG	1 cut(s)	556
BglII	AGATCT	1 cut(s)	860
BisI	GCNGC	1 cut(s)	102
BlpI	GCTNAGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	5 cut(s)	81, 156, 205, 510, 802
Bme18I	GGWCC	2 cut(s)	77, 275
BmeT110I	CYCGRG	1 cut(s)	839
BmgT120I	GGNCC	2 cut(s)	77, 275
BmiI	GGNNCC	5 cut(s)	79, 276, 522, 684, 893
BmrFI	CCNGG	5 cut(s)	81, 156, 205, 510, 802
BmsI	GCATC	2 cut(s)	34, 60
BmtI	GCTAGC	1 cut(s)	51
BoxI	GACNNNNGTC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	52
Bpu1102I	GCTNAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	75
BpuMI	CCSGG	2 cut(s)	81, 205
BsaBI	GATNNNNATC	1 cut(s)	654
BsaJI	CCNNGG	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse1I	ACTGG	4 cut(s)	79, 189, 285, 345
Bse3DI	GCAATG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	3 cut(s)	156, 510, 802
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	3 cut(s)	200, 670, 731
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	530, 878
BseNI	ACTGG	4 cut(s)	79, 189, 285, 345
BseRI	GAGGAG	1 cut(s)	862
BseSI	GKGCMC	1 cut(s)	877
BseXI	GCAGC	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	877
BsiHKCI	CYCGRG	1 cut(s)	839
BsiSI	CCGG	2 cut(s)	81, 204
BslFI	GGGAC	3 cut(s)	63, 288, 688
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmAI	GTCTC	2 cut(s)	70, 562
BsmFI	GGGAC	3 cut(s)	63, 288, 688
BsoBI	CYCGRG	1 cut(s)	839
Bsp1286I	GDGCHC	1 cut(s)	877
Bsp143I	GATC	5 cut(s)	512, 593, 811, 827, 860
Bsp1720I	GCTNAGC	1 cut(s)	176
BspACI	CCGC	3 cut(s)	776, 844, 883
BspCNI	CTCAG	2 cut(s)	529, 877
BspHI	TCATGA	1 cut(s)	808
BspLI	GGNNCC	5 cut(s)	79, 276, 522, 684, 893
BspOI	GCTAGC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	682
BspTI	CTTAAG	1 cut(s)	556
BsrBI	CCGCTC	1 cut(s)	844
BsrDI	GCAATG	1 cut(s)	166
BsrI	ACTGG	4 cut(s)	79, 189, 285, 345
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	5 cut(s)	512, 593, 811, 827, 860
Bst2UI	CCWGG	3 cut(s)	156, 510, 802
Bst4CI	ACNGT	2 cut(s)	64, 238
BstAFI	CTTAAG	1 cut(s)	556
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	176, 516, 864
BstF5I	GGATG	3 cut(s)	200, 670, 731
BstKTI	GATC	5 cut(s)	515, 596, 814, 830, 863
BstMAI	GTCTC	2 cut(s)	70, 562
BstMBI	GATC	5 cut(s)	512, 593, 811, 827, 860
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	3 cut(s)	156, 510, 802
BstPAI	GACNNNNGTC	1 cut(s)	261
BstSCI	CCNGG	5 cut(s)	79, 154, 203, 508, 800
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	877
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	2 cut(s)	512, 860
BstYI	RGATCY	2 cut(s)	512, 860
BtsCI	GGATG	3 cut(s)	200, 670, 731
BtsIMutI	CAGTG	2 cut(s)	54, 338
Cac8I	GCNNGC	1 cut(s)	49
CciI	TCATGA	1 cut(s)	808
Cfr13I	GGNCC	2 cut(s)	77, 275
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	2 cut(s)	809, 917
CviJI	RGCY	6 cut(s)	84, 168, 175, 180, 800, 894
CviKI_1	RGCY	6 cut(s)	84, 168, 175, 180, 800, 894
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	3 cut(s)	176, 516, 864
DpnI	GATC	5 cut(s)	514, 595, 813, 829, 862
DpnII	GATC	5 cut(s)	512, 593, 811, 827, 860
EciI	GGCGGA	1 cut(s)	791
Eco47I	GGWCC	2 cut(s)	77, 275
Eco57I	CTGAAG	2 cut(s)	154, 863
Eco88I	CYCGRG	1 cut(s)	839
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRI	GAATTC	2 cut(s)	323, 745
EcoRII	CCWGG	3 cut(s)	154, 508, 800
FaeI	CATG	2 cut(s)	812, 920
FaiI	YATR	7 cut(s)	11, 455, 740, 771, 810, 918, 932
FaqI	GGGAC	3 cut(s)	63, 288, 688
FatI	CATG	2 cut(s)	808, 916
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	3 cut(s)	187, 677, 718
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	2 cut(s)	48, 720
GluI	GCNGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	52
HapII	CCGG	2 cut(s)	81, 204
Hin1II	CATG	2 cut(s)	812, 920
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	5 cut(s)	95, 115, 335, 352, 407
HpaII	CCGG	2 cut(s)	81, 204
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	875
Hpy188I	TCNGA	3 cut(s)	421, 441, 607
Hpy188III	TCNNGA	8 cut(s)	69, 92, 311, 332, 518, 575, 809, 912
Hpy8I	GTNNAC	1 cut(s)	875
Hpy99I	CGWCG	1 cut(s)	594
HpyAV	CCTTC	4 cut(s)	129, 288, 308, 338
HpyCH4III	ACNGT	2 cut(s)	64, 238
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	5 cut(s)	268, 430, 628, 709, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	3 cut(s)	176, 516, 864
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	812, 920
Kzo9I	GATC	5 cut(s)	512, 593, 811, 827, 860
LmnI	GCTCC	2 cut(s)	109, 891
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	2 cut(s)	34, 60
MaeI	CTAG	2 cut(s)	48, 720
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	2 cut(s)	232, 575
MalI	GATC	5 cut(s)	514, 595, 813, 829, 862
MbiI	CCGCTC	1 cut(s)	844
MboI	GATC	5 cut(s)	512, 593, 811, 827, 860
MboII	GAAGA	6 cut(s)	6, 383, 441, 578, 612, 864
MflI	RGATCY	2 cut(s)	512, 860
MhlI	GDGCHC	1 cut(s)	877
MluCI	AATT	6 cut(s)	323, 424, 703, 745, 832, 855
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	6 cut(s)	628, 738, 766, 840, 848, 915
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	4 cut(s)	345, 395, 498, 557
MspA1I	CMGCKG	1 cut(s)	883
MspCI	CTTAAG	1 cut(s)	556
MspI	CCGG	2 cut(s)	81, 204
MspR9I	CCNGG	5 cut(s)	81, 156, 205, 510, 802
MvaI	CCWGG	3 cut(s)	156, 510, 802
MwoI	GCNNNNNNNGC	1 cut(s)	165
NciI	CCSGG	2 cut(s)	81, 205
NdeII	GATC	5 cut(s)	512, 593, 811, 827, 860
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	2 cut(s)	812, 920
NlaIV	GGNNCC	5 cut(s)	79, 276, 522, 684, 893
NmeAIII	GCCGAG	1 cut(s)	206
NmuCI	GTSAC	2 cut(s)	232, 575
PaeR7I	CTCGAG	1 cut(s)	839
PagI	TCATGA	1 cut(s)	808
PcsI	WCGNNNNNNNCGW	1 cut(s)	538
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	4 cut(s)	95, 115, 335, 407
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	275
PshAI	GACNNNNGTC	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	3 cut(s)	154, 508, 800
PspGI	CCWGG	3 cut(s)	154, 508, 800
PspN4I	GGNNCC	5 cut(s)	79, 276, 522, 684, 893
PspPI	GGNCC	2 cut(s)	77, 275
PspPPI	RGGWCCY	1 cut(s)	275
PspXI	VCTCGAGB	1 cut(s)	839
PsuI	RGATCY	2 cut(s)	512, 860
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
SaqAI	TTAA	4 cut(s)	345, 395, 498, 557
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	5 cut(s)	512, 593, 811, 827, 860
Sau96I	GGNCC	2 cut(s)	77, 275
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	5 cut(s)	81, 156, 205, 510, 802
SduI	GDGCHC	1 cut(s)	877
SfaNI	GCATC	2 cut(s)	34, 60
SfcI	CTRYAG	1 cut(s)	525
Sfr274I	CTCGAG	1 cut(s)	839
SinI	GGWCC	2 cut(s)	77, 275
SlaI	CTCGAG	1 cut(s)	839
SmlI	CTYRAG	3 cut(s)	90, 556, 839
SmoI	CTYRAG	3 cut(s)	90, 556, 839
Sse9I	AATT	6 cut(s)	323, 424, 703, 745, 832, 855
SsiI	CCGC	3 cut(s)	776, 844, 883
SspMI	CTAG	2 cut(s)	48, 720
StyD4I	CCNGG	5 cut(s)	79, 154, 203, 508, 800
TaaI	ACNGT	2 cut(s)	64, 238
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	4 cut(s)	310, 592, 743, 840
TaqII	GACCGA	1 cut(s)	805
TasI	AATT	6 cut(s)	323, 424, 703, 745, 832, 855
TfiI	GAWTC	4 cut(s)	95, 115, 335, 407
Tru1I	TTAA	4 cut(s)	345, 395, 498, 557
Tru9I	TTAA	4 cut(s)	345, 395, 498, 557
TscAI	CASTG	2 cut(s)	61, 345
TseFI	GTSAC	2 cut(s)	232, 575
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	2 cut(s)	232, 575
TspDTI	ATGAA	3 cut(s)	48, 318, 738
TspRI	CASTG	2 cut(s)	61, 345
Vha464I	CTTAAG	1 cut(s)	556
VneI	GTGCAC	1 cut(s)	873
VpaK11BI	GGWCC	2 cut(s)	77, 275
XapI	RAATTY	4 cut(s)	323, 703, 745, 832
XhoI	CTCGAG	1 cut(s)	839
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	2 cut(s)	48, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.