Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005028

Physical Location & Seq

Genomic Coordinates Reverse (-)

44415359 .. 44439369

Gene Structure 24011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG336300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGATCTCCTCAGGGAGTAATTCTGGTTTTTACCCGGAGGAGATTACAAAGGAGACATGGTTGCTCACCGAGGAAGGGAAGACATATGCTGTTCATGGAATGCCAGAAGTGCAGCTCTTCCTGTCCATACCGCAAGAGGGCATCACGAAAGATGAATTGCAGAAAAAGTTTGATGCATCGGTTTTCAAAATAGCTTGTGCCCAGGCTGCAAAGAATAAATGGGTACGTGGACTTTGGAAAGCAACTAGTGACCAGAAAGATCCAACATGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

91

Amino Acids

10.14

Weight (kDa)

5.77

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PheRS_DBD3	PF18553	35 - 76	7.9e-11	PheRS DNA binding domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45290 AT5G45290
fragaria_vesca	FvH4_5g24480
malus_domestica	MD06G1013000.v1.1 MD16G1287000.v1.1
prunus_persica	Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1
pyrus_communis	pycom06g01080 pycom16g25680
rosa_chinensis	RchiOBHm_Chr7g0214911
rosa_laevigata	RLG00000002709
rosa_multiflora	Rmu_sc0002308.1_g000009 Rmu_sc0017494.1_g000001 Rmu_sc0017495.1_g000001 Rmu_ssc0000134.1_g000013
rosa_roxburghii	Rroxscaffold_3G00244890
rosa_rugosa	Rorug07G0148100.1 Rorug07G0148200
rosa_samantha	Rh1BG196000 Rh1DG224000 Rh2CG336300 Rh2CG349800 Rh3DG066400 Rh7AG285200 Rh7BG276000 Rh7BG276900 Rh7CG304300 Rh7DG288800
rosa_wichuraiana	Rw7G024350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	269
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	75, 137, 269
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	187
AhlI	ACTAGT	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	115, 194
AluI	AGCT	2 cut(s)	115, 194
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	254
ApeKI	GCWGC	2 cut(s)	112, 206
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	58
AxyI	CCTNAGG	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	124, 193
BciT130I	CCWGG	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	47
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	113, 207
BlsI	GCNGC	2 cut(s)	114, 208
Bme1390I	CCNGG	2 cut(s)	35, 203
BmrFI	CCNGG	2 cut(s)	35, 203
BmsI	GCATC	3 cut(s)	150, 163, 185
BpiI	GAAGAC	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	69, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 137, 269
Bse21I	CCTNAGG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	69, 201
BseLI	CCNNNNNNNGG	3 cut(s)	75, 137, 269
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	124, 193
BsgI	GTGCAG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	75, 137, 269
BsmAI	GTCTC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	3, 259
BspACI	CCGC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	23
BspPI	GGATC	1 cut(s)	254
BspQI	GCTCTTC	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	69, 201
BssMI	GATC	2 cut(s)	3, 259
Bst2UI	CCWGG	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	6, 262
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	3, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 206
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	33, 201
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	124, 193
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Bsu36I	CCTNAGG	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	57, 95, 267
CviJI	RGCY	3 cut(s)	115, 194, 206
CviKI_1	RGCY	3 cut(s)	115, 194, 206
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	2 cut(s)	5, 261
DpnII	GATC	2 cut(s)	3, 259
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	178
FaeI	CATG	3 cut(s)	60, 98, 270
FaiI	YATR	6 cut(s)	58, 85, 87, 96, 128, 268
FatI	CATG	3 cut(s)	56, 94, 266
FauNDI	CATATG	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	113, 207
Fsp4HI	GCNGC	2 cut(s)	113, 207
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	2 cut(s)	113, 207
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	3 cut(s)	60, 98, 270
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	4 cut(s)	112, 160, 176, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 206
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	3 cut(s)	60, 98, 270
Kzo9I	GATC	2 cut(s)	3, 259
LguI	GCTCTTC	1 cut(s)	122
LpnPI	CCDG	7 cut(s)	9, 48, 117, 134, 188, 215, 266
Lsp1109I	GCAGC	2 cut(s)	124, 193
LweI	GCATC	3 cut(s)	150, 163, 185
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	5, 261
MboI	GATC	2 cut(s)	3, 259
MboII	GAAGA	2 cut(s)	91, 109
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	2 cut(s)	19, 155
MnlI	CCTC	4 cut(s)	19, 31, 64, 130
Mph1103I	ATGCAT	1 cut(s)	178
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	35, 203
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	109, 206
NciI	CCSGG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	2 cut(s)	3, 259
NlaIII	CATG	3 cut(s)	60, 98, 270
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	270
PciI	ACATGT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	122
PctI	GAATGC	1 cut(s)	105
PflMI	CCANNNNNTGG	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	114, 208
Ppu21I	YACGTR	1 cut(s)	227
PscI	ACATGT	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	122
SatI	GCNGC	2 cut(s)	113, 207
Sau3AI	GATC	2 cut(s)	3, 259
ScrFI	CCNGG	2 cut(s)	35, 203
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	3 cut(s)	117, 196, 229
SfaNI	GCATC	3 cut(s)	150, 163, 185
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	2 cut(s)	19, 155
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	33, 201
TaiI	ACGT	1 cut(s)	229
TasI	AATT	2 cut(s)	19, 155
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	112, 206
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	83, 168
Van91I	CCANNNNNTGG	1 cut(s)	269
XceI	RCATGY	1 cut(s)	270
XspI	CTAG	1 cut(s)	246
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.