Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005028

Physical Location & Seq

Genomic Coordinates Forward (+)

1075848 .. 1081437

Gene Structure 5590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGCCTTGTATATCTCCAAATGTTCAGCTGAATGAATGGGGTCAGGCTAGTATCACTGATACTGCTTCCAGAACTGCTAGCAGCTCTGCCCAACCTTCTGCTTCTTCAACTATGAACCCTTCAAGTCGTTTCCTTTCTCGCTTTAGCTTCATTCCAGGTAATGTAAGCTTCAGGTTAAGCCGGGCAACAAGTTTAGGGTCATCCAGGTCTTATCCTCTATCTTCGACAAGTGTCACGAACAATGAGGATGAGCTTCATCTACATGCAAGGCCCGCTAACAGTTTGATAGATACAGATGAAAGCCAACAAACTAATGACTTTCTTCCAGAATCACAGGTTAATAGGATGCCAGCACATATTTATAACGACACTTCTGGCAATGCACGATTAAATACTCTGGGATCTGGTTTTTCTGGCCTCTTGCAAGCTAACCAAACAAATCCTTCAAGACGTGATGCTGGTAGAAATGCTAACGGTTCAATAATGGGCGTTGGTGTAAACTCGTGTTCTCCTAGAATTCATAATGAAACAGGAAGCAGCAGAACTAGACCTTCTGATAGACGTTTGGGGGCTCGGGAACCTGTTGAACGGAATGTTCGTTTCAGCAGAACCTTAAGTGTTGGAAGACTTCGTGACAGGGTACTTCGTCGATCATCATTATCTGATTTAACATTTTCTTCTTTGCAACAAGAAGTGAGAGATACAAATCAGGGAGATGATACACGGAGTTTGGAACCTGAAGGTAATGTTGTAAACTCCGAAAATGGGTCTGGTTATCCCTCTAATATTTCTAGTTCATTGTTTGGCATTCAAGACTATGGAGTGGAAACATCAAGACCAAGAGAGGCTAGGTATCATGATCTACTTGAACACAGATCAAATTTCCTAGAGCGGAGGAGAAGAATACGATCTCAGGTTCGTGCACTTCAGCGGTTGGGGAGCCGCTTTGAAAACGTGCCTGGACATGAGAGGTCTTGTATCTTATCTGGTCAACAGAGAACAGGTCGTTGTACATGTCGTACGAGTAATCGAGATGCCGGTCCAAATGATGACAACAGTGCTAGGGCTAGCATATCAAGAATAGTTATGTTAGCTGAGGCTTTGTTTGAGGTTCTGGATGAAATTCACCAGCAATCCGTGGTTTTATCTTCCCGACCTTCTGTATCGTCAATTGGATCTGTTCCTGCTCCTAATGAAGTTGTGGAATCTTTGCCTGTCAAATTGTTTTCGAAGTTGCAAAAAAATGAGTATGAGGAGGCTGCACAATGCTACATATGCCTTGTGGAGTATGAAGAAGGAGACAGAATGAGAATACTGCCTTGCCATCATGAATTTCATAAAACTTGTATCGACAAGTGGCTCAAGGAGATTCACAGGGTATGCCCGCTCTGTCGCAGGGATATCTGTAGATCTGATGAATTGCCGGCAGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

479

Amino Acids

53.3

Weight (kDa)

8.46

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45290 AT5G45290
fragaria_vesca	FvH4_5g24480
malus_domestica	MD06G1013000.v1.1 MD16G1287000.v1.1
prunus_persica	Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1
pyrus_communis	pycom06g01080 pycom16g25680
rosa_chinensis	RchiOBHm_Chr7g0214911
rosa_laevigata	RLG00000002709
rosa_multiflora	Rmu_sc0002308.1_g000009 Rmu_sc0017494.1_g000001 Rmu_sc0017495.1_g000001 Rmu_ssc0000134.1_g000013
rosa_roxburghii	Rroxscaffold_3G00244890
rosa_rugosa	Rorug07G0148100.1 Rorug07G0148200
rosa_samantha	Rh1BG196000 Rh1DG224000 Rh2CG336300 Rh2CG349800 Rh3DG066400 Rh7AG285200 Rh7BG276000 Rh7BG276900 Rh7CG304300 Rh7DG288800
rosa_wichuraiana	Rw7G024350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AccBSI	CCGCTC	2 cut(s)	892, 1387
AciI	CCGC	5 cut(s)	273, 892, 931, 943, 1385
AclWI	GGATC	2 cut(s)	409, 1183
AcsI	RAATTY	4 cut(s)	516, 880, 1122, 1331
AcuI	CTGAAG	3 cut(s)	154, 759, 911
AfaI	GTAC	3 cut(s)	642, 1012, 1021
AfiI	CCNNNNNNNGG	1 cut(s)	765
AflII	CTTAAG	1 cut(s)	613
AflIII	ACRYGT	1 cut(s)	1013
AgsI	TTSAA	8 cut(s)	108, 123, 447, 480, 587, 812, 869, 950
AjiI	CACGTC	1 cut(s)	452
AjnI	CCWGG	3 cut(s)	154, 203, 958
AluBI	AGCT	7 cut(s)	28, 84, 147, 168, 253, 428, 1094
AluI	AGCT	7 cut(s)	28, 84, 147, 168, 253, 428, 1094
Alw21I	GWGCWC	1 cut(s)	925
Alw26I	GTCTC	1 cut(s)	1293
Alw44I	GTGCAC	1 cut(s)	921
AlwI	GGATC	2 cut(s)	409, 1183
Ama87I	CYCGRG	1 cut(s)	573
AoxI	GGCC	2 cut(s)	269, 415
ApaLI	GTGCAC	1 cut(s)	921
ApeKI	GCWGC	3 cut(s)	81, 537, 1259
ApoI	RAATTY	4 cut(s)	516, 880, 1122, 1331
AspS9I	GGNCC	2 cut(s)	270, 1040
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	1118
AsuII	TTCGAA	1 cut(s)	1229
AsuNHI	GCTAGC	2 cut(s)	77, 1067
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	1 cut(s)	1040
BaeGI	GKGCMC	1 cut(s)	925
BanII	GRGCYC	1 cut(s)	574
BauI	CACGAG	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	631
Bbv12I	GWGCWC	1 cut(s)	925
BbvCI	CCTCAGC	1 cut(s)	1095
BbvI	GCAGC	3 cut(s)	93, 549, 1246
BccI	CCATC	1 cut(s)	1332
BciT130I	CCWGG	3 cut(s)	156, 205, 960
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	1293
BfaI	CTAG	9 cut(s)	48, 78, 513, 546, 792, 849, 887, 1062, 1068
BfmI	CTRYAG	1 cut(s)	1405
BfrI	CTTAAG	1 cut(s)	613
BglII	AGATCT	1 cut(s)	1409
BisI	GCNGC	4 cut(s)	82, 538, 943, 1260
BlsI	GCNGC	4 cut(s)	83, 539, 944, 1261
Bme1390I	CCNGG	4 cut(s)	156, 182, 205, 960
Bme18I	GGWCC	1 cut(s)	1040
BmeT110I	CYCGRG	1 cut(s)	573
BmgBI	CACGTC	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	270, 1040
BmiI	GGNNCC	3 cut(s)	579, 735, 941
BmrFI	CCNGG	4 cut(s)	156, 182, 205, 960
BmsI	GCATC	3 cut(s)	336, 445, 1024
BmtI	GCTAGC	2 cut(s)	81, 1071
BoxI	GACNNNNGTC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	631
Bpu10I	CCTNAGC	1 cut(s)	1095
Bpu14I	TTCGAA	1 cut(s)	1229
BpuEI	CTTGAG	1 cut(s)	1346
BpuMI	CCSGG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	705
BsaJI	CCNNGG	1 cut(s)	1137
Bsc4I	CCNNNNNNNGG	1 cut(s)	765
Bse118I	RCCGGY	2 cut(s)	1037, 1423
Bse3DI	GCAATG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	3 cut(s)	156, 205, 960
BseDI	CCNNGG	1 cut(s)	1137
BseGI	GGATG	4 cut(s)	200, 253, 351, 1123
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	1 cut(s)	765
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	926, 1086
BseRI	GAGGAG	2 cut(s)	910, 1268
BseSI	GKGCMC	1 cut(s)	925
BseXI	GCAGC	3 cut(s)	93, 549, 1246
BsgI	GTGCAG	1 cut(s)	1245
BshFI	GGCC	2 cut(s)	271, 417
BsiHKAI	GWGCWC	1 cut(s)	925
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	3 cut(s)	181, 1038, 1424
BsiWI	CGTACG	1 cut(s)	1019
BslI	CCNNNNNNNGG	1 cut(s)	765
BsmAI	GTCTC	1 cut(s)	1293
BsmI	GAATGC	1 cut(s)	807
BsnI	GGCC	2 cut(s)	271, 417
BsoBI	CYCGRG	1 cut(s)	573
Bsp119I	TTCGAA	1 cut(s)	1229
Bsp1286I	GDGCHC	2 cut(s)	574, 925
Bsp1407I	TGTACA	1 cut(s)	1010
Bsp143I	GATC	7 cut(s)	401, 650, 859, 875, 908, 1175, 1409
BspACI	CCGC	5 cut(s)	273, 892, 931, 943, 1385
BspANI	GGCC	2 cut(s)	271, 417
BspCNI	CTCAG	2 cut(s)	925, 1087
BspHI	TCATGA	2 cut(s)	856, 1327
BspLI	GGNNCC	3 cut(s)	579, 735, 941
BspOI	GCTAGC	2 cut(s)	81, 1071
BspPI	GGATC	2 cut(s)	409, 1183
BspT104I	TTCGAA	1 cut(s)	1229
BspTI	CTTAAG	1 cut(s)	613
BsrBI	CCGCTC	2 cut(s)	892, 1387
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	2 cut(s)	1037, 1423
BsrGI	TGTACA	1 cut(s)	1010
BssAI	RCCGGY	2 cut(s)	1037, 1423
BssECI	CCNNGG	1 cut(s)	1137
BssMI	GATC	7 cut(s)	401, 650, 859, 875, 908, 1175, 1409
BssSI	CACGAG	1 cut(s)	502
Bst2BI	CACGAG	1 cut(s)	502
Bst2UI	CCWGG	3 cut(s)	156, 205, 960
Bst4CI	ACNGT	3 cut(s)	281, 476, 1058
BstAFI	CTTAAG	1 cut(s)	613
BstAUI	TGTACA	1 cut(s)	1010
BstBI	TTCGAA	1 cut(s)	1229
BstC8I	GCNNGC	7 cut(s)	79, 273, 351, 426, 1069, 1385, 1425
BstDEI	CTNAG	2 cut(s)	912, 1095
BstDSI	CCRYGG	1 cut(s)	1137
BstF5I	GGATG	4 cut(s)	200, 253, 351, 1123
BstKTI	GATC	7 cut(s)	404, 653, 862, 878, 911, 1178, 1412
BstMAI	GTCTC	1 cut(s)	1293
BstMBI	GATC	7 cut(s)	401, 650, 859, 875, 908, 1175, 1409
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 1275
BstNI	CCWGG	3 cut(s)	156, 205, 960
BstNSI	RCATGY	2 cut(s)	266, 1017
BstPAI	GACNNNNGTC	1 cut(s)	230
BstSCI	CCNGG	4 cut(s)	154, 180, 203, 958
BstSFI	CTRYAG	1 cut(s)	1405
BstSLI	GKGCMC	1 cut(s)	925
BstV1I	GCAGC	3 cut(s)	93, 549, 1246
BstV2I	GAAGAC	1 cut(s)	631
BstX2I	RGATCY	3 cut(s)	401, 1175, 1409
BstYI	RGATCY	3 cut(s)	401, 1175, 1409
BsuRI	GGCC	2 cut(s)	271, 417
BtgI	CCRYGG	1 cut(s)	1137
BtrI	CACGTC	1 cut(s)	452
BtsCI	GGATG	4 cut(s)	200, 253, 351, 1123
BtsIMutI	CAGTG	2 cut(s)	54, 1063
Cac8I	GCNNGC	7 cut(s)	79, 273, 351, 426, 1069, 1385, 1425
CciI	TCATGA	2 cut(s)	856, 1327
Cfr10I	RCCGGY	2 cut(s)	1037, 1423
Cfr13I	GGNCC	2 cut(s)	270, 1040
Csp6I	GTAC	3 cut(s)	641, 1011, 1020
CviAII	CATG	5 cut(s)	263, 857, 965, 1014, 1328
CviQI	GTAC	3 cut(s)	641, 1011, 1020
DdeI	CTNAG	2 cut(s)	912, 1095
DpnI	GATC	7 cut(s)	403, 652, 861, 877, 910, 1177, 1411
DpnII	GATC	7 cut(s)	401, 650, 859, 875, 908, 1175, 1409
Eco24I	GRGCYC	1 cut(s)	574
Eco32I	GATATC	1 cut(s)	1402
Eco47I	GGWCC	1 cut(s)	1040
Eco57I	CTGAAG	3 cut(s)	154, 759, 911
Eco88I	CYCGRG	1 cut(s)	573
EcoRI	GAATTC	1 cut(s)	516
EcoRII	CCWGG	3 cut(s)	154, 203, 958
EcoRV	GATATC	1 cut(s)	1402
EcoT38I	GRGCYC	1 cut(s)	574
FaeI	CATG	5 cut(s)	266, 860, 968, 1017, 1331
FatI	CATG	5 cut(s)	262, 856, 964, 1013, 1327
FauI	CCCGC	2 cut(s)	280, 1392
FauNDI	CATATG	1 cut(s)	1274
Fnu4HI	GCNGC	4 cut(s)	82, 538, 943, 1260
FokI	GGATG	4 cut(s)	187, 260, 358, 1130
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	4 cut(s)	82, 538, 943, 1260
FspBI	CTAG	9 cut(s)	48, 78, 513, 546, 792, 849, 887, 1062, 1068
GluI	GCNGC	4 cut(s)	82, 538, 943, 1260
HaeIII	GGCC	2 cut(s)	271, 417
HapII	CCGG	3 cut(s)	181, 1038, 1424
Hin1II	CATG	5 cut(s)	266, 860, 968, 1017, 1331
HincII	GTYRAC	1 cut(s)	992
HindII	GTYRAC	1 cut(s)	992
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	3 cut(s)	329, 1205, 1369
HpaII	CCGG	3 cut(s)	181, 1038, 1424
HphI	GGTGA	1 cut(s)	1118
Hpy166II	GTNNAC	4 cut(s)	499, 754, 923, 992
Hpy188I	TCNGA	4 cut(s)	556, 664, 760, 1414
Hpy8I	GTNNAC	4 cut(s)	499, 754, 923, 992
Hpy99I	CGWCG	1 cut(s)	651
HpyAV	CCTTC	7 cut(s)	105, 129, 453, 561, 734, 1167, 1289
HpyCH4III	ACNGT	3 cut(s)	281, 476, 1058
HpyCH4IV	ACGT	3 cut(s)	451, 562, 954
HpyCH4V	TGCA	7 cut(s)	266, 383, 424, 685, 923, 1237, 1262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 1275
HpyF3I	CTNAG	2 cut(s)	912, 1095
HpySE526I	ACGT	3 cut(s)	451, 562, 954
Hsp92II	CATG	5 cut(s)	266, 860, 968, 1017, 1331
KroI	GCCGGC	1 cut(s)	1423
KroNI	GCCGGC	1 cut(s)	1425
Kzo9I	GATC	7 cut(s)	401, 650, 859, 875, 908, 1175, 1409
LmnI	GCTCC	2 cut(s)	939, 1192
Lsp1109I	GCAGC	3 cut(s)	93, 549, 1246
LweI	GCATC	3 cut(s)	336, 445, 1024
MaeI	CTAG	9 cut(s)	48, 78, 513, 546, 792, 849, 887, 1062, 1068
MaeII	ACGT	3 cut(s)	451, 562, 954
MaeIII	GTNAC	2 cut(s)	232, 632
MalI	GATC	7 cut(s)	403, 652, 861, 877, 910, 1177, 1411
MbiI	CCGCTC	2 cut(s)	892, 1387
MboI	GATC	7 cut(s)	401, 650, 859, 875, 908, 1175, 1409
MboII	GAAGA	8 cut(s)	96, 213, 314, 636, 669, 912, 1140, 1304
MfeI	CAATTG	1 cut(s)	1170
MflI	RGATCY	3 cut(s)	401, 1175, 1409
MhlI	GDGCHC	2 cut(s)	574, 925
MluCI	AATT	7 cut(s)	516, 880, 1122, 1170, 1220, 1331, 1418
MmeI	TCCRAC	1 cut(s)	601
MroNI	GCCGGC	1 cut(s)	1423
MseI	TTAA	5 cut(s)	176, 339, 389, 614, 668
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	2 cut(s)	28, 931
MspCI	CTTAAG	1 cut(s)	613
MspI	CCGG	3 cut(s)	181, 1038, 1424
MspR9I	CCNGG	4 cut(s)	156, 182, 205, 960
MunI	CAATTG	1 cut(s)	1170
Mva1269I	GAATGC	1 cut(s)	807
MvaI	CCWGG	3 cut(s)	156, 205, 960
MwoI	GCNNNNNNNGC	2 cut(s)	272, 1275
NaeI	GCCGGC	1 cut(s)	1425
NciI	CCSGG	1 cut(s)	182
NdeI	CATATG	1 cut(s)	1274
NdeII	GATC	7 cut(s)	401, 650, 859, 875, 908, 1175, 1409
NgoMIV	GCCGGC	1 cut(s)	1423
NheI	GCTAGC	2 cut(s)	77, 1067
NlaIII	CATG	5 cut(s)	266, 860, 968, 1017, 1331
NlaIV	GGNNCC	3 cut(s)	579, 735, 941
NmuCI	GTSAC	2 cut(s)	232, 632
NspI	RCATGY	2 cut(s)	266, 1017
NspV	TTCGAA	1 cut(s)	1229
PagI	TCATGA	2 cut(s)	856, 1327
PciI	ACATGT	1 cut(s)	1013
PcsI	WCGNNNNNNNCGW	1 cut(s)	595
PctI	GAATGC	1 cut(s)	807
PdiI	GCCGGC	1 cut(s)	1425
PfeI	GAWTC	3 cut(s)	329, 1205, 1369
Pfl23II	CGTACG	1 cut(s)	1019
PkrI	GCNGC	4 cut(s)	83, 539, 944, 1261
PscI	ACATGT	1 cut(s)	1013
PshAI	GACNNNNGTC	1 cut(s)	230
PsiI	TTATAA	1 cut(s)	363
Psp6I	CCWGG	3 cut(s)	154, 203, 958
PspGI	CCWGG	3 cut(s)	154, 203, 958
PspLI	CGTACG	1 cut(s)	1019
PspN4I	GGNNCC	3 cut(s)	579, 735, 941
PspPI	GGNCC	2 cut(s)	270, 1040
PsuI	RGATCY	3 cut(s)	401, 1175, 1409
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	3 cut(s)	642, 1012, 1021
RsaNI	GTAC	3 cut(s)	641, 1011, 1020
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	5 cut(s)	176, 339, 389, 614, 668
SatI	GCNGC	4 cut(s)	82, 538, 943, 1260
Sau3AI	GATC	7 cut(s)	401, 650, 859, 875, 908, 1175, 1409
Sau96I	GGNCC	2 cut(s)	270, 1040
ScrFI	CCNGG	4 cut(s)	156, 182, 205, 960
SduI	GDGCHC	2 cut(s)	574, 925
SfaNI	GCATC	3 cut(s)	336, 445, 1024
SfcI	CTRYAG	1 cut(s)	1405
SfuI	TTCGAA	1 cut(s)	1229
SinI	GGWCC	1 cut(s)	1040
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	613, 1361
SmoI	CTYRAG	2 cut(s)	613, 1361
Sse9I	AATT	7 cut(s)	516, 880, 1122, 1170, 1220, 1331, 1418
SsiI	CCGC	5 cut(s)	273, 892, 931, 943, 1385
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	9 cut(s)	48, 78, 513, 546, 792, 849, 887, 1062, 1068
StyD4I	CCNGG	4 cut(s)	154, 180, 203, 958
TaaI	ACNGT	3 cut(s)	281, 476, 1058
TaiI	ACGT	3 cut(s)	454, 565, 957
TaqI	TCGA	5 cut(s)	224, 649, 1030, 1229, 1350
TasI	AATT	7 cut(s)	516, 880, 1122, 1170, 1220, 1331, 1418
TatI	WGTACW	1 cut(s)	1010
TauI	GCSGC	1 cut(s)	945
TfiI	GAWTC	3 cut(s)	329, 1205, 1369
Tru1I	TTAA	5 cut(s)	176, 339, 389, 614, 668
Tru9I	TTAA	5 cut(s)	176, 339, 389, 614, 668
TscAI	CASTG	2 cut(s)	61, 1063
TseFI	GTSAC	2 cut(s)	232, 632
TseI	GCWGC	3 cut(s)	81, 537, 1259
Tsp45I	GTSAC	2 cut(s)	232, 632
TspGWI	ACGGA	3 cut(s)	604, 739, 1126
TspRI	CASTG	2 cut(s)	61, 1063
Vha464I	CTTAAG	1 cut(s)	613
VneI	GTGCAC	1 cut(s)	921
VpaK11BI	GGWCC	1 cut(s)	1040
XapI	RAATTY	4 cut(s)	516, 880, 1122, 1331
XceI	RCATGY	2 cut(s)	266, 1017
XspI	CTAG	9 cut(s)	48, 78, 513, 546, 792, 849, 887, 1062, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.