Rh7AG285200

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005028
Physical Location & Seq
Reverse (-)
30526472 .. 30532667
6196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG285200.1

Sequence Viewer

Length: 1158 bp
ATGGGATCGAGCGGCAGCAAAGCCACGTCGTCGTCCGGCGATGGTGGTCGGAGGCGACGATCCAAATCCATCGCCGGCAGAGTGTTCCGCTCGTCTTGTCTCGGAATCAAATCTCGATCTCGCCACGCCGACGATGACGAGCAGGTCTGTGAACATCGGAACAAAGGAAATAGAATTATTGCTCCTTGTACAAACCAGACCGTCACAGAGCAGGATCGTGCAAAGGAGTATTTCGGAAAGGTTAACATTGAACAATCTGATGAAATGCCTTGTATATCTTCAAACGCTGAACTCAATGAATGGGGTGATGCTAGCATCACTGATACTGTCTCCAGAACTGGTCCTGGCTCTGCTCAAGATTCTGCTGCTCCATCTTTGAATCCTTCAAGTCGTTTCCTTTCCCGTTTTAGTTTTGTTCCTGGCAATGTAAGCTTCAGGCTTAGCCGAGCAACCAGTTTGGGGTCATCCGGGTCTTATCCTGTATCATCAACAAGTGTCACAGTATTGAATAATGATGATGACCTACATCTGCAAACGGGACCTTCTACCAGTTTGGTTGGTAGAGATGAAAGTCGAGAAGGTTGTGAATTCCTTCCAGAATCACTGGTTAATAGGACTCCTACACATTTTTTTGAAGACACTTCTGGTAGTTTAGGATTAAATAATGTGGAATCTGGTTTTTCTGACAATTTGCAAGATAATCAGACAAATTCTTCTATACAAGATGGCAGAAATGCTAATGGTAGAATAATAGGGGTACTTAACAGATACCCAGGATCTCAGGAACCTGTAGAACGAAATGTTCGTTTTAGCAGAACCTTAAGTGTTGGGAGACTTCGTGACAGGGTTCTTCGTCGATCATCTTTGTCTGATTTAGCATTTTCTTCTTTGCAACAAGAGGGAGAAGTGAGAGATACAAATCAGGGGGATGATACAGGGACATTGGCACCTGAAAGTAGTGTTGTAAATTTGCAAAATGGGTCTGGTTATCCTCCATCCAATATGTCGAATTCATTGTTTAGCAACCAAGACTATGAGGCGGAAACAATAAGACCGAGAGAAGCCAGGTATCATGATCTACTCGAACACAGATCAAATTTCCTCGAGCGGAGGAGAAGAATTAGATCTCAGGTTTGTATATATTCCTGTTCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

385

Amino Acids

42.28

Weight (kDa)

6.15

Isoelectric Point (pI)

60.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 946
AccBSI CCGCTC 3 cut(s) 12, 90, 1108
AciI CCGC 4 cut(s) 12, 88, 1040, 1108
AclWI GGATC 4 cut(s) 13, 54, 222, 784
AcsI RAATTY 5 cut(s) 587, 709, 967, 1009, 1096
AcuI CTGAAG 1 cut(s) 418
AfaI GTAC 2 cut(s) 190, 759
AfiI CCNNNNNNNGG 1 cut(s) 459
AflII CTTAAG 1 cut(s) 820
AgsI TTSAA 6 cut(s) 251, 282, 379, 387, 508, 635
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 4 cut(s) 343, 418, 772, 1064
AluBI AGCT 1 cut(s) 432
AluI AGCT 1 cut(s) 432
Alw26I GTCTC 3 cut(s) 104, 334, 826
AlwI GGATC 4 cut(s) 13, 54, 222, 784
Ama87I CYCGRG 1 cut(s) 1103
ApeKI GCWGC 2 cut(s) 15, 365
ApoI RAATTY 5 cut(s) 587, 709, 967, 1009, 1096
Asp700I GAANNNNTTC 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 341, 539
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 317
AsuNHI GCTAGC 1 cut(s) 311
AvaI CYCGRG 1 cut(s) 1103
AvaII GGWCC 2 cut(s) 341, 539
BanI GGYRCC 1 cut(s) 946
BbsI GAAGAC 1 cut(s) 642
BbvI GCAGC 2 cut(s) 27, 352
BccI CCATC 5 cut(s) 35, 77, 379, 719, 1003
BciT130I CCWGG 4 cut(s) 345, 420, 774, 1066
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 3 cut(s) 104, 334, 826
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 789
BfrI CTTAAG 1 cut(s) 820
BfuAI ACCTGC 1 cut(s) 133
BglII AGATCT 1 cut(s) 1124
BisI GCNGC 3 cut(s) 13, 16, 366
BlpI GCTNAGC 1 cut(s) 440
BlsI GCNGC 3 cut(s) 14, 17, 367
Bme1390I CCNGG 5 cut(s) 345, 420, 469, 774, 1066
Bme18I GGWCC 2 cut(s) 341, 539
BmeT110I CYCGRG 1 cut(s) 1103
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 341, 539
BmiI GGNNCC 3 cut(s) 540, 786, 948
BmrFI CCNGG 5 cut(s) 345, 420, 469, 774, 1066
BmsI GCATC 2 cut(s) 298, 324
BmtI GCTAGC 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 316
Bpu1102I GCTNAGC 1 cut(s) 440
BpuEI CTTGAG 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 469
BsaBI GATNNNNATC 2 cut(s) 64, 918
BsaJI CCNNGG 1 cut(s) 772
BsaXI ACNNNNNCTCC 2 cut(s) 823, 853
Bsc4I CCNNNNNNNGG 1 cut(s) 459
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 4 cut(s) 343, 453, 549, 609
Bse3DI GCAATG 1 cut(s) 430
Bse8I GATNNNNATC 2 cut(s) 64, 918
BseBI CCWGG 4 cut(s) 345, 420, 774, 1066
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 3 cut(s) 464, 934, 995
BseJI GATNNNNATC 2 cut(s) 64, 918
BseLI CCNNNNNNNGG 1 cut(s) 459
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 2 cut(s) 794, 1142
BseNI ACTGG 4 cut(s) 343, 453, 549, 609
BseRI GAGGAG 1 cut(s) 1126
BseXI GCAGC 2 cut(s) 27, 352
BshNI GGYRCC 1 cut(s) 946
BsiHKCI CYCGRG 1 cut(s) 1103
BsiSI CCGG 3 cut(s) 36, 75, 468
BslFI GGGAC 2 cut(s) 552, 952
BslI CCNNNNNNNGG 1 cut(s) 459
BsmAI GTCTC 3 cut(s) 104, 334, 826
BsmFI GGGAC 2 cut(s) 552, 952
BsoBI CYCGRG 1 cut(s) 1103
Bsp1407I TGTACA 1 cut(s) 188
Bsp143I GATC 9 cut(s) 5, 59, 116, 214, 776, 857, 1075, 1091, 1124
Bsp1720I GCTNAGC 1 cut(s) 440
BspACI CCGC 4 cut(s) 12, 88, 1040, 1108
BspCNI CTCAG 2 cut(s) 793, 1141
BspHI TCATGA 1 cut(s) 1072
BspLI GGNNCC 3 cut(s) 540, 786, 948
BspMI ACCTGC 1 cut(s) 133
BspOI GCTAGC 1 cut(s) 315
BspPI GGATC 4 cut(s) 13, 54, 222, 784
BspT107I GGYRCC 1 cut(s) 946
BspTI CTTAAG 1 cut(s) 820
BsrBI CCGCTC 3 cut(s) 12, 90, 1108
BsrDI GCAATG 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 188
BsrI ACTGG 4 cut(s) 343, 453, 549, 609
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 772
BssMI GATC 9 cut(s) 5, 59, 116, 214, 776, 857, 1075, 1091, 1124
Bst2UI CCWGG 4 cut(s) 345, 420, 774, 1066
Bst4CI ACNGT 3 cut(s) 202, 328, 502
BstAFI CTTAAG 1 cut(s) 820
BstAUI TGTACA 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 76, 313
BstDEI CTNAG 3 cut(s) 440, 780, 1128
BstF5I GGATG 3 cut(s) 464, 934, 995
BstKTI GATC 9 cut(s) 8, 62, 119, 217, 779, 860, 1078, 1094, 1127
BstMAI GTCTC 3 cut(s) 104, 334, 826
BstMBI GATC 9 cut(s) 5, 59, 116, 214, 776, 857, 1075, 1091, 1124
BstMWI GCNNNNNNNGC 1 cut(s) 429
BstNI CCWGG 4 cut(s) 345, 420, 774, 1066
BstSCI CCNGG 5 cut(s) 343, 418, 467, 772, 1064
BstSFI CTRYAG 1 cut(s) 789
BstV1I GCAGC 2 cut(s) 27, 352
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 2 cut(s) 776, 1124
BstYI RGATCY 2 cut(s) 776, 1124
BtgZI GCGATG 2 cut(s) 54, 55
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 3 cut(s) 464, 934, 995
BtsIMutI CAGTG 2 cut(s) 318, 602
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 76, 313
CciI TCATGA 1 cut(s) 1072
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 341, 539
Csp6I GTAC 2 cut(s) 189, 758
CviAII CATG 1 cut(s) 1073
CviJI RGCY 6 cut(s) 23, 348, 432, 439, 444, 1064
CviKI_1 RGCY 6 cut(s) 23, 348, 432, 439, 444, 1064
CviQI GTAC 2 cut(s) 189, 758
DdeI CTNAG 3 cut(s) 440, 780, 1128
DpnI GATC 9 cut(s) 7, 61, 118, 216, 778, 859, 1077, 1093, 1126
DpnII GATC 9 cut(s) 5, 59, 116, 214, 776, 857, 1075, 1091, 1124
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 1055
Eco47I GGWCC 2 cut(s) 341, 539
Eco57I CTGAAG 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 1103
EcoO109I RGGNCCY 1 cut(s) 539
EcoRI GAATTC 2 cut(s) 587, 1009
EcoRII CCWGG 4 cut(s) 343, 418, 772, 1064
FaeI CATG 1 cut(s) 1076
FaiI YATR 7 cut(s) 275, 719, 1004, 1035, 1074, 1139, 1141
FaqI GGGAC 2 cut(s) 552, 952
FatI CATG 1 cut(s) 1072
Fnu4HI GCNGC 3 cut(s) 13, 16, 366
FokI GGATG 3 cut(s) 451, 941, 982
Fsp4HI GCNGC 3 cut(s) 13, 16, 366
FspBI CTAG 1 cut(s) 312
GluI GCNGC 3 cut(s) 13, 16, 366
GsuI CTGGAG 1 cut(s) 316
HapII CCGG 3 cut(s) 36, 75, 468
Hin1II CATG 1 cut(s) 1076
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 6 cut(s) 105, 359, 379, 599, 616, 671
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 3 cut(s) 36, 75, 468
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 152, 244
Hpy188I TCNGA 9 cut(s) 51, 104, 159, 236, 259, 685, 705, 871, 1153
Hpy188III TCNNGA 8 cut(s) 114, 333, 356, 575, 596, 782, 839, 1073
Hpy8I GTNNAC 2 cut(s) 152, 244
Hpy99I CGWCG 5 cut(s) 31, 34, 60, 134, 858
HpyAV CCTTC 4 cut(s) 393, 552, 572, 602
HpyCH4III ACNGT 3 cut(s) 202, 328, 502
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 5 cut(s) 221, 532, 694, 892, 973
HpyF10VI GCNNNNNNNGC 1 cut(s) 429
HpyF3I CTNAG 3 cut(s) 440, 780, 1128
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 1 cut(s) 1076
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 9 cut(s) 5, 59, 116, 214, 776, 857, 1075, 1091, 1124
LmnI GCTCC 2 cut(s) 187, 373
Lsp1109I GCAGC 2 cut(s) 27, 352
LweI GCATC 2 cut(s) 298, 324
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 3 cut(s) 202, 496, 839
MalI GATC 9 cut(s) 7, 61, 118, 216, 778, 859, 1077, 1093, 1126
MbiI CCGCTC 3 cut(s) 12, 90, 1108
MboI GATC 9 cut(s) 5, 59, 116, 214, 776, 857, 1075, 1091, 1124
MboII GAAGA 6 cut(s) 270, 647, 705, 842, 876, 1128
MflI RGATCY 2 cut(s) 776, 1124
MluCI AATT 8 cut(s) 174, 587, 688, 709, 967, 1009, 1096, 1119
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 6 cut(s) 45, 892, 1002, 1030, 1104, 1112
MroNI GCCGGC 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 5 cut(s) 243, 609, 659, 762, 821
MspCI CTTAAG 1 cut(s) 820
MspI CCGG 3 cut(s) 36, 75, 468
MspR9I CCNGG 5 cut(s) 345, 420, 469, 774, 1066
MvaI CCWGG 4 cut(s) 345, 420, 774, 1066
MwoI GCNNNNNNNGC 1 cut(s) 429
NaeI GCCGGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 469
NdeII GATC 9 cut(s) 5, 59, 116, 214, 776, 857, 1075, 1091, 1124
NgoMIV GCCGGC 1 cut(s) 74
NheI GCTAGC 1 cut(s) 311
NlaIII CATG 1 cut(s) 1076
NlaIV GGNNCC 3 cut(s) 540, 786, 948
NmeAIII GCCGAG 1 cut(s) 470
NmuCI GTSAC 3 cut(s) 202, 496, 839
PaeR7I CTCGAG 1 cut(s) 1103
PagI TCATGA 1 cut(s) 1072
PcsI WCGNNNNNNNCGW 2 cut(s) 55, 802
PdiI GCCGGC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 5 cut(s) 105, 359, 379, 599, 671
PkrI GCNGC 3 cut(s) 14, 17, 367
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PpuMI RGGWCCY 1 cut(s) 539
Psp5II RGGWCCY 1 cut(s) 539
Psp6I CCWGG 4 cut(s) 343, 418, 772, 1064
PspGI CCWGG 4 cut(s) 343, 418, 772, 1064
PspN4I GGNNCC 3 cut(s) 540, 786, 948
PspPI GGNCC 2 cut(s) 341, 539
PspPPI RGGWCCY 1 cut(s) 539
PspXI VCTCGAGB 1 cut(s) 1103
PsuI RGATCY 2 cut(s) 776, 1124
RsaI GTAC 2 cut(s) 190, 759
RsaNI GTAC 2 cut(s) 189, 758
SaqAI TTAA 5 cut(s) 243, 609, 659, 762, 821
SatI GCNGC 3 cut(s) 13, 16, 366
Sau3AI GATC 9 cut(s) 5, 59, 116, 214, 776, 857, 1075, 1091, 1124
Sau96I GGNCC 2 cut(s) 341, 539
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 5 cut(s) 345, 420, 469, 774, 1066
SfaNI GCATC 2 cut(s) 298, 324
SfcI CTRYAG 1 cut(s) 789
Sfr274I CTCGAG 1 cut(s) 1103
SinI GGWCC 2 cut(s) 341, 539
SlaI CTCGAG 1 cut(s) 1103
SmlI CTYRAG 3 cut(s) 354, 820, 1103
SmoI CTYRAG 3 cut(s) 354, 820, 1103
Sse9I AATT 8 cut(s) 174, 587, 688, 709, 967, 1009, 1096, 1119
SsiI CCGC 4 cut(s) 12, 88, 1040, 1108
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 5 cut(s) 343, 418, 467, 772, 1064
TaaI ACNGT 3 cut(s) 202, 328, 502
TaiI ACGT 1 cut(s) 29
TaqI TCGA 7 cut(s) 8, 115, 574, 856, 1007, 1083, 1104
TaqII GACCGA 1 cut(s) 1069
TasI AATT 8 cut(s) 174, 587, 688, 709, 967, 1009, 1096, 1119
TatI WGTACW 1 cut(s) 188
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 5 cut(s) 105, 359, 379, 599, 671
Tru1I TTAA 5 cut(s) 243, 609, 659, 762, 821
Tru9I TTAA 5 cut(s) 243, 609, 659, 762, 821
TscAI CASTG 2 cut(s) 325, 609
TseFI GTSAC 3 cut(s) 202, 496, 839
TseI GCWGC 2 cut(s) 15, 365
Tsp45I GTSAC 3 cut(s) 202, 496, 839
TspDTI ATGAA 4 cut(s) 276, 312, 582, 1002
TspRI CASTG 2 cut(s) 325, 609
Vha464I CTTAAG 1 cut(s) 820
VpaK11BI GGWCC 2 cut(s) 341, 539
XapI RAATTY 5 cut(s) 587, 709, 967, 1009, 1096
XhoI CTCGAG 1 cut(s) 1103
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.