Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005028

Physical Location & Seq

Genomic Coordinates Forward (+)

1718563 .. 1725983

Gene Structure 7421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G015800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1731 bp

ATGGGATCGGGTGGGAGCAAAGCGACGGCGTCTGCATTTTCTTCTTCAACGTCGTCGTTTGGTGGCAATGGTCGAAGGCGTCGATCCAAATCTAAATTCAGCAGAGTGCTCAAGTCGTCTTGTCTGGGAACCACATCTCGATCCCACGACAGCGACAATGACGACCAGGTATGTGATCATCAGAACAAAGAAACTAGAAATAATGCTCCATGTGCAACTTTGAATGACACAGAGCCAGATCATGCAAAGGTTGAGTGTTTCAGAAAGGTTAACGTTGAACAACCTGATGAAATTCCGTGTATATCTTCAAATGTTCAGCTCAATGAATGGGGTCAGGCTAGTATCACTGATACTGCCTCCAGAGCTGGTAGCAGCTCTGCTCAAGCTGCTGCTCCATCTTTGAACCCTTCAAGTCGTTTCCTTTCTCGTTTTAGTTTCATTCCAGGTAATGTAAGCTTCAGATTAAGCCGGGCAACCAGTTTAGGGTCATCCAATCCTCTATCTCCAACAAGTCTCACAATACCGAACAACGAAGATGAACTTCATCTGCATTCAAGACCTGCTAGAAGTTTTGTAAATAGAGATGAAAGCCAAGAAGCCAGTGACCTTCCACAGTCACAGATGAATAGGAGCGCAACACATTTTTATGAAGAGACTTCTGACAATATAGGATTAAATACTCCGGGATGTGGTTTTTCTGTCAACTTGCAAGATAACCAGACAAATTCTTCTAGACACGATGTTGGTAGAAATGCTAACGGTACAATAATGGGGGTTGGTGTAAACTTGTGTTCTCCGAGAAATCATAATGAAACAGGGAGCAACAGAACTAGACCTTCCGAAAGACGCCCAGGTGCTCGGGAACCTGTTGAACGGAATGTTCGTTTCAGTAGAACTTTAAGTGTTGGAAGACTTCGTGACAGGGTACTCCGTCGATCATCATTATCTGATTTAACATTTTCTTCTTTGCAACAAGAAGGAGAAGTGAGAGATACAAATCAAGGTGATGATACAAGAACAATGGCACCTGAAGGCAATGCTGTAAATTTCGAAAATGGGTCTGGTTATCCTCCATCCAATATGTCTAGTTCATTGTTTAGCATCCAAGACTATGAGGTGGAAACATCAAGACCAAGAGAAGCTAGATATCATGATCTACTTGAACACAGATCAAATTTCCTAGAGCGGAGGAGAAGAATACGATCTCAGGTTCGTGCACTTCAGAGATTAGGGAGCCGCTTTGAAAACGTGTCTGGACATGAGAGATCTTGTATCTTATCTGGTCAACAGCGAACGGGTCGTTGTACATGTCGTACGAGTAGCCGAGATGCCCGTCCAAATGATGACAATAGTGCTAGGGCTAGCATATCAAGAATAGTTATGTTAGCTGAGGCTTTGTTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCCTCTCGACCTTCTGTATCGTCAATTGGATCTGTTCCCGCTCCTACTGAAGTTGTGGAATCTTTGCCTGTCAAATTGTTTTCCAAGTTGCAAAAGCATCAGTATGAGGAGGCTGCACAATGCTACATATGCCTTGTGGAGTACGAAGAAGGAGACATAATGCGAGTACTGCCTTGCCATCATGAATTTCATAAAACTTGTATTGACAAGTGGCTCAAGGAGATTCACAGGGTATGCCCACTCTGTCGCAGGGATATCTGTAGATCTGATGTGTTGCCTGCAGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

577

Amino Acids

64.04

Weight (kDa)

8.29

Isoelectric Point (pI)

62.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45290 AT5G45290
fragaria_vesca	FvH4_5g24480
malus_domestica	MD06G1013000.v1.1 MD16G1287000.v1.1
prunus_persica	Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1 Prupe.5G015800_v2.0.a1
pyrus_communis	pycom06g01080 pycom16g25680
rosa_chinensis	RchiOBHm_Chr7g0214911
rosa_laevigata	RLG00000002709
rosa_multiflora	Rmu_sc0002308.1_g000009 Rmu_sc0017494.1_g000001 Rmu_sc0017495.1_g000001 Rmu_ssc0000134.1_g000013
rosa_roxburghii	Rroxscaffold_3G00244890
rosa_rugosa	Rorug07G0148100.1 Rorug07G0148200
rosa_samantha	Rh1BG196000 Rh1DG224000 Rh2CG336300 Rh2CG349800 Rh3DG066400 Rh7AG285200 Rh7BG276000 Rh7BG276900 Rh7CG304300 Rh7DG288800
rosa_wichuraiana	Rw7G024350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	568
AccB1I	GGYRCC	1 cut(s)	1024
AccBSI	CCGCTC	2 cut(s)	1186, 1481
AciI	CCGC	3 cut(s)	1186, 1237, 1479
AclI	AACGTT	1 cut(s)	273
AclWI	GGATC	4 cut(s)	13, 78, 135, 1477
AcsI	RAATTY	7 cut(s)	95, 291, 724, 1045, 1174, 1416, 1625
AcuI	CTGAAG	4 cut(s)	442, 1050, 1205, 1509
AcyI	GRCGYC	3 cut(s)	29, 79, 847
AfaI	GTAC	6 cut(s)	763, 927, 1306, 1315, 1583, 1608
AfiI	CCNNNNNNNGG	2 cut(s)	483, 689
AflIII	ACRYGT	2 cut(s)	1248, 1307
AjnI	CCWGG	3 cut(s)	165, 442, 850
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	7 cut(s)	319, 365, 375, 386, 456, 1142, 1388
AluI	AGCT	7 cut(s)	319, 365, 375, 386, 456, 1142, 1388
Alw21I	GWGCWC	3 cut(s)	111, 859, 1219
Alw26I	GTCTC	3 cut(s)	518, 647, 1587
Alw44I	GTGCAC	1 cut(s)	1215
AlwI	GGATC	4 cut(s)	13, 78, 135, 1477
Ama87I	CYCGRG	1 cut(s)	858
ApaLI	GTGCAC	1 cut(s)	1215
ApeKI	GCWGC	4 cut(s)	372, 386, 389, 1553
ApoI	RAATTY	7 cut(s)	95, 291, 724, 1045, 1174, 1416, 1625
AspLEI	GCGC	1 cut(s)	635
AsuC2I	CCSGG	2 cut(s)	470, 684
AsuHPI	GGTGA	2 cut(s)	1016, 1412
AsuII	TTCGAA	1 cut(s)	1050
AsuNHI	GCTAGC	1 cut(s)	1361
AvaI	CYCGRG	1 cut(s)	858
BaeGI	GKGCMC	1 cut(s)	1219
BanI	GGYRCC	1 cut(s)	1024
BbsI	GAAGAC	1 cut(s)	916
Bbv12I	GWGCWC	3 cut(s)	111, 859, 1219
BbvCI	CCTCAGC	1 cut(s)	1389
BbvI	GCAGC	4 cut(s)	373, 376, 384, 1540
BccI	CCATC	3 cut(s)	403, 1081, 1626
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	3 cut(s)	167, 444, 852
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	2 cut(s)	470, 684
BcoDI	GTCTC	3 cut(s)	518, 647, 1587
BfmI	CTRYAG	2 cut(s)	1699, 1719
BfuAI	ACCTGC	1 cut(s)	568
BglII	AGATCT	2 cut(s)	1265, 1703
BisI	GCNGC	5 cut(s)	373, 387, 390, 1237, 1554
BlsI	GCNGC	5 cut(s)	374, 388, 391, 1238, 1555
BmcAI	AGTACT	1 cut(s)	1608
Bme1390I	CCNGG	5 cut(s)	167, 444, 470, 684, 852
BmeT110I	CYCGRG	1 cut(s)	858
BmiI	GGNNCC	4 cut(s)	130, 864, 1026, 1235
BmrFI	CCNGG	5 cut(s)	167, 444, 470, 684, 852
BmsI	GCATC	3 cut(s)	1110, 1318, 1546
BmtI	GCTAGC	1 cut(s)	1365
BpiI	GAAGAC	1 cut(s)	916
BpmI	CTGGAG	1 cut(s)	343
Bpu10I	CCTNAGC	1 cut(s)	1389
Bpu14I	TTCGAA	1 cut(s)	1050
BpuEI	CTTGAG	3 cut(s)	95, 366, 1640
BpuMI	CCSGG	2 cut(s)	470, 684
BsaBI	GATNNNNATC	2 cut(s)	88, 996
BsaHI	GRCGYC	3 cut(s)	29, 79, 847
BsaJI	CCNNGG	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	2 cut(s)	483, 689
Bse1I	ACTGG	2 cut(s)	477, 600
Bse3DI	GCAATG	2 cut(s)	73, 1042
Bse8I	GATNNNNATC	2 cut(s)	88, 996
BseBI	CCWGG	3 cut(s)	167, 444, 852
BseDI	CCNNGG	1 cut(s)	850
BseGI	GGATG	5 cut(s)	488, 692, 1073, 1101, 1417
BseJI	GATNNNNATC	2 cut(s)	88, 996
BseLI	CCNNNNNNNGG	2 cut(s)	483, 689
BseMI	GCAATG	2 cut(s)	73, 1042
BseMII	CTCAG	2 cut(s)	1220, 1380
BseNI	ACTGG	2 cut(s)	477, 600
BseRI	GAGGAG	2 cut(s)	1204, 1562
BseSI	GKGCMC	1 cut(s)	1219
BseXI	GCAGC	4 cut(s)	373, 376, 384, 1540
BsgI	GTGCAG	1 cut(s)	1539
BshNI	GGYRCC	1 cut(s)	1024
BsiHKAI	GWGCWC	3 cut(s)	111, 859, 1219
BsiHKCI	CYCGRG	1 cut(s)	858
BsiSI	CCGG	2 cut(s)	469, 683
BsiWI	CGTACG	1 cut(s)	1313
BslI	CCNNNNNNNGG	2 cut(s)	483, 689
BsmAI	GTCTC	3 cut(s)	518, 647, 1587
BsmI	GAATGC	1 cut(s)	550
BsoBI	CYCGRG	1 cut(s)	858
Bsp119I	TTCGAA	1 cut(s)	1050
Bsp1286I	GDGCHC	3 cut(s)	111, 859, 1219
Bsp1407I	TGTACA	1 cut(s)	1304
BspACI	CCGC	3 cut(s)	1186, 1237, 1479
BspCNI	CTCAG	2 cut(s)	1219, 1381
BspHI	TCATGA	2 cut(s)	1150, 1621
BspLI	GGNNCC	4 cut(s)	130, 864, 1026, 1235
BspMAI	CTGCAG	1 cut(s)	1723
BspMI	ACCTGC	1 cut(s)	568
BspOI	GCTAGC	1 cut(s)	1365
BspPI	GGATC	4 cut(s)	13, 78, 135, 1477
BspT104I	TTCGAA	1 cut(s)	1050
BspT107I	GGYRCC	1 cut(s)	1024
BsrBI	CCGCTC	2 cut(s)	1186, 1481
BsrDI	GCAATG	2 cut(s)	73, 1042
BsrGI	TGTACA	1 cut(s)	1304
BsrI	ACTGG	2 cut(s)	477, 600
BssECI	CCNNGG	1 cut(s)	850
BssNI	GRCGYC	3 cut(s)	29, 79, 847
Bst2UI	CCWGG	3 cut(s)	167, 444, 852
Bst4CI	ACNGT	2 cut(s)	615, 761
Bst6I	CTCTTC	1 cut(s)	645
BstACI	GRCGYC	3 cut(s)	29, 79, 847
BstAUI	TGTACA	1 cut(s)	1304
BstBI	TTCGAA	1 cut(s)	1050
BstC8I	GCNNGC	2 cut(s)	1363, 1719
BstDEI	CTNAG	2 cut(s)	1206, 1389
BstF5I	GGATG	5 cut(s)	488, 692, 1073, 1101, 1417
BstHHI	GCGC	1 cut(s)	635
BstMAI	GTCTC	3 cut(s)	518, 647, 1587
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 362, 386, 1569, 1609
BstNI	CCWGG	3 cut(s)	167, 444, 852
BstNSI	RCATGY	1 cut(s)	1311
BstSCI	CCNGG	5 cut(s)	165, 442, 468, 682, 850
BstSFI	CTRYAG	2 cut(s)	1699, 1719
BstSLI	GKGCMC	1 cut(s)	1219
BstV1I	GCAGC	4 cut(s)	373, 376, 384, 1540
BstV2I	GAAGAC	1 cut(s)	916
BstX2I	RGATCY	3 cut(s)	1265, 1469, 1703
BstYI	RGATCY	3 cut(s)	1265, 1469, 1703
BtsCI	GGATG	5 cut(s)	488, 692, 1073, 1101, 1417
BtsIMutI	CAGTG	2 cut(s)	345, 607
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	1363, 1719
CciI	TCATGA	2 cut(s)	1150, 1621
CfoI	GCGC	1 cut(s)	635
CseI	GACGC	3 cut(s)	18, 68, 855
CsiI	ACCWGGT	1 cut(s)	165
Csp6I	GTAC	6 cut(s)	762, 926, 1305, 1314, 1582, 1607
CviAII	CATG	6 cut(s)	210, 242, 1151, 1259, 1308, 1622
CviQI	GTAC	6 cut(s)	762, 926, 1305, 1314, 1582, 1607
DdeI	CTNAG	2 cut(s)	1206, 1389
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco32I	GATATC	2 cut(s)	1148, 1696
Eco57I	CTGAAG	4 cut(s)	442, 1050, 1205, 1509
Eco88I	CYCGRG	1 cut(s)	858
EcoRII	CCWGG	3 cut(s)	165, 442, 850
EcoRV	GATATC	2 cut(s)	1148, 1696
FaeI	CATG	6 cut(s)	213, 245, 1154, 1262, 1311, 1625
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	6 cut(s)	209, 241, 1150, 1258, 1307, 1621
FauI	CCCGC	1 cut(s)	1486
FauNDI	CATATG	1 cut(s)	1568
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	5 cut(s)	373, 387, 390, 1237, 1554
FokI	GGATG	5 cut(s)	475, 699, 1060, 1088, 1424
Fsp4HI	GCNGC	5 cut(s)	373, 387, 390, 1237, 1554
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	5 cut(s)	373, 387, 390, 1237, 1554
GsuI	CTGGAG	1 cut(s)	343
HapII	CCGG	2 cut(s)	469, 683
HgaI	GACGC	3 cut(s)	18, 68, 855
HhaI	GCGC	1 cut(s)	635
Hin1I	GRCGYC	3 cut(s)	29, 79, 847
Hin1II	CATG	6 cut(s)	213, 245, 1154, 1262, 1311, 1625
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	3 cut(s)	271, 703, 1286
HindII	GTYRAC	3 cut(s)	271, 703, 1286
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	2 cut(s)	1499, 1663
HpaI	GTTAAC	1 cut(s)	271
HpaII	CCGG	2 cut(s)	469, 683
HphI	GGTGA	2 cut(s)	1016, 1412
Hpy166II	GTNNAC	5 cut(s)	271, 703, 784, 1217, 1286
Hpy188I	TCNGA	9 cut(s)	183, 263, 461, 661, 798, 841, 949, 1224, 1708
Hpy8I	GTNNAC	5 cut(s)	271, 703, 784, 1217, 1286
Hpy99I	CGWCG	5 cut(s)	28, 55, 58, 84, 936
HpyAV	CCTTC	8 cut(s)	69, 417, 617, 846, 971, 1025, 1461, 1583
HpyCH4III	ACNGT	2 cut(s)	615, 761
HpyCH4IV	ACGT	3 cut(s)	50, 273, 1248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 362, 386, 1569, 1609
HpyF3I	CTNAG	2 cut(s)	1206, 1389
HpySE526I	ACGT	3 cut(s)	50, 273, 1248
Hsp92I	GRCGYC	3 cut(s)	29, 79, 847
Hsp92II	CATG	6 cut(s)	213, 245, 1154, 1262, 1311, 1625
HspAI	GCGC	1 cut(s)	633
Ksp22I	TGATCA	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	271
LmnI	GCTCC	7 cut(s)	15, 211, 397, 630, 819, 1233, 1486
Lsp1109I	GCAGC	4 cut(s)	373, 376, 384, 1540
LweI	GCATC	3 cut(s)	1110, 1318, 1546
MabI	ACCWGGT	1 cut(s)	165
MaeII	ACGT	3 cut(s)	50, 273, 1248
MaeIII	GTNAC	3 cut(s)	602, 615, 917
MbiI	CCGCTC	2 cut(s)	1186, 1481
MfeI	CAATTG	1 cut(s)	1464
MflI	RGATCY	3 cut(s)	1265, 1469, 1703
MhlI	GDGCHC	3 cut(s)	111, 859, 1219
MluCI	AATT	9 cut(s)	95, 291, 724, 1045, 1174, 1416, 1464, 1514, 1625
MmeI	TCCRAC	2 cut(s)	530, 886
MseI	TTAA	5 cut(s)	270, 464, 674, 899, 953
MslI	CAYNNNNRTG	2 cut(s)	645, 1542
MspI	CCGG	2 cut(s)	469, 683
MspR9I	CCNGG	5 cut(s)	167, 444, 470, 684, 852
MunI	CAATTG	1 cut(s)	1464
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	3 cut(s)	167, 444, 852
MwoI	GCNNNNNNNGC	5 cut(s)	212, 362, 386, 1569, 1609
NciI	CCSGG	2 cut(s)	470, 684
NdeI	CATATG	1 cut(s)	1568
NheI	GCTAGC	1 cut(s)	1361
NlaIII	CATG	6 cut(s)	213, 245, 1154, 1262, 1311, 1625
NlaIV	GGNNCC	4 cut(s)	130, 864, 1026, 1235
NmeAIII	GCCGAG	1 cut(s)	1349
NmuCI	GTSAC	3 cut(s)	602, 615, 917
NspI	RCATGY	1 cut(s)	1311
NspV	TTCGAA	1 cut(s)	1050
PagI	TCATGA	2 cut(s)	1150, 1621
PciI	ACATGT	1 cut(s)	1307
PcsI	WCGNNNNNNNCGW	2 cut(s)	79, 880
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	1499, 1663
Pfl23II	CGTACG	1 cut(s)	1313
PflFI	GACNNNGTC	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	682
PkrI	GCNGC	5 cut(s)	374, 388, 391, 1238, 1555
PscI	ACATGT	1 cut(s)	1307
Psp1406I	AACGTT	1 cut(s)	273
Psp6I	CCWGG	3 cut(s)	165, 442, 850
PspGI	CCWGG	3 cut(s)	165, 442, 850
PspLI	CGTACG	1 cut(s)	1313
PspN4I	GGNNCC	4 cut(s)	130, 864, 1026, 1235
PstI	CTGCAG	1 cut(s)	1723
PsuI	RGATCY	3 cut(s)	1265, 1469, 1703
PsyI	GACNNNGTC	1 cut(s)	28
RsaI	GTAC	6 cut(s)	763, 927, 1306, 1315, 1583, 1608
RsaNI	GTAC	6 cut(s)	762, 926, 1305, 1314, 1582, 1607
RseI	CAYNNNNRTG	2 cut(s)	645, 1542
SaqAI	TTAA	5 cut(s)	270, 464, 674, 899, 953
SatI	GCNGC	5 cut(s)	373, 387, 390, 1237, 1554
ScaI	AGTACT	1 cut(s)	1608
ScrFI	CCNGG	5 cut(s)	167, 444, 470, 684, 852
SduI	GDGCHC	3 cut(s)	111, 859, 1219
SexAI	ACCWGGT	1 cut(s)	165
SfaNI	GCATC	3 cut(s)	1110, 1318, 1546
SfcI	CTRYAG	2 cut(s)	1699, 1719
SfuI	TTCGAA	1 cut(s)	1050
SmiMI	CAYNNNNRTG	2 cut(s)	645, 1542
SmlI	CTYRAG	3 cut(s)	110, 381, 1655
SmoI	CTYRAG	3 cut(s)	110, 381, 1655
Sse9I	AATT	9 cut(s)	95, 291, 724, 1045, 1174, 1416, 1464, 1514, 1625
SsiI	CCGC	3 cut(s)	1186, 1237, 1479
StyD4I	CCNGG	5 cut(s)	165, 442, 468, 682, 850
TaaI	ACNGT	2 cut(s)	615, 761
TaiI	ACGT	3 cut(s)	53, 276, 1251
TaqI	TCGA	6 cut(s)	73, 82, 139, 934, 1050, 1447
TasI	AATT	9 cut(s)	95, 291, 724, 1045, 1174, 1416, 1464, 1514, 1625
TatI	WGTACW	2 cut(s)	1304, 1606
TauI	GCSGC	1 cut(s)	1239
TfiI	GAWTC	2 cut(s)	1499, 1663
Tru1I	TTAA	5 cut(s)	270, 464, 674, 899, 953
Tru9I	TTAA	5 cut(s)	270, 464, 674, 899, 953
TscAI	CASTG	2 cut(s)	352, 607
TseFI	GTSAC	3 cut(s)	602, 615, 917
TseI	GCWGC	4 cut(s)	372, 386, 389, 1553
Tsp45I	GTSAC	3 cut(s)	602, 615, 917
TspGWI	ACGGA	3 cut(s)	285, 889, 920
TspRI	CASTG	2 cut(s)	352, 607
Tth111I	GACNNNGTC	1 cut(s)	28
VneI	GTGCAC	1 cut(s)	1215
XapI	RAATTY	7 cut(s)	95, 291, 724, 1045, 1174, 1416, 1625
XbaI	TCTAGA	1 cut(s)	731
XceI	RCATGY	1 cut(s)	1311
ZrmI	AGTACT	1 cut(s)	1608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.