Rh1BG196000

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005028
Physical Location & Seq
Forward (+)
31257763 .. 31268988
11226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG196000.1

Sequence Viewer

Length: 771 bp
ATGAAACTCACAGTCAGTCCTCTCAGACACACCCTAAATCTCAGTCCGCTCTCAATCCGCTTTCACAAACTCACAGAGATTACAAAGGAGACATGGTTGCTCACCGAGGAAGGGAAGACATATGCTGTTCATGGAATGCCAGAAGTGCGGCTCTTCCTGTCCATACCGCAAGAGGGCATCACGAAAGATGAATTGCAGAAAAAGTTTGATGCATCGGTTTTCAAAATAGCTTGCGCCCAGGCTGCAAAGAATAAATGGGTACGTGGACTTTGGAAAGCAACTAGTGACCAGAAAGAAAGAGTGATCCCAGGAATTGAGCTGGTGCGGTTAGCATCATGGTGTTTGCAGGTTCGTGCACTTCAGCGGTTAGGGAGCCGTTTTGAAAATGTGTCTGGACATGAGAGGTCTTGTATATTATCTGGTCAGCAGAGAACCGGTCGGTGTACATGTCGTTCAAGTAACCGAGATGCCCATCCAAATGATAACAGCAGTGCTAGGGCAAGCATATCCCGAATTGTTATGTTAGCTGAGGCTTTGTTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCCTCCCGACCTTCTGTATCTTCAATTGGATCTGTTCCTGCACCTAATGAAGTTGTAGAATCTTTGCCTGTCAAATTATTTTCCAAGTTGCAAAAACATCAGCATGAAGAGGCTGCACATGAATTAGATGGAAGTTGCATGGAAAACAATATATCATCCCAACTTAAAGACCTAACTACCTCGTCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

256

Amino Acids

28.59

Weight (kDa)

8.92

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PheRS_DBD3 PF18553 47 - 88 3.6e-10 PheRS DNA binding domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AccBSI CCGCTC 1 cut(s) 49
AciI CCGC 6 cut(s) 47, 58, 148, 167, 325, 364
AclWI GGATC 2 cut(s) 298, 616
AcsI RAATTY 1 cut(s) 555
AcuI CTGAAG 1 cut(s) 344
AfaI GTAC 2 cut(s) 261, 445
AfiI CCNNNNNNNGG 2 cut(s) 111, 173
AflIII ACRYGT 1 cut(s) 446
AgeI ACCGGT 1 cut(s) 434
AgsI TTSAA 4 cut(s) 223, 383, 456, 603
AhlI ACTAGT 1 cut(s) 281
AjnI CCWGG 2 cut(s) 237, 307
AluBI AGCT 3 cut(s) 230, 319, 527
AluI AGCT 3 cut(s) 230, 319, 527
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 83
Alw44I GTGCAC 1 cut(s) 354
AlwI GGATC 2 cut(s) 298, 616
ApaLI GTGCAC 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 242, 692
ApoI RAATTY 1 cut(s) 555
AsiGI ACCGGT 1 cut(s) 434
AspLEI GCGC 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 94, 551
BaeGI GKGCMC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 358
BbvCI CCTCAGC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 229, 679
BccI CCATC 2 cut(s) 480, 701
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 2 cut(s) 239, 309
BcoDI GTCTC 1 cut(s) 83
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 2 cut(s) 282, 495
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 3 cut(s) 149, 243, 693
BlsI GCNGC 3 cut(s) 150, 244, 694
Bme1390I CCNGG 2 cut(s) 239, 309
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 2 cut(s) 239, 309
BmsI GCATC 5 cut(s) 186, 199, 221, 341, 457
BpiI GAAGAC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 528
BsaAI YACGTR 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 471
BsaJI CCNNGG 3 cut(s) 105, 237, 307
BsaWI WCCGGW 1 cut(s) 434
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 173
Bse118I RCCGGY 1 cut(s) 434
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 2 cut(s) 239, 309
BseDI CCNNGG 3 cut(s) 105, 237, 307
BseGI GGATG 3 cut(s) 472, 556, 734
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 2 cut(s) 111, 173
BseMII CTCAG 3 cut(s) 37, 55, 519
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 2 cut(s) 229, 679
BsgI GTGCAG 2 cut(s) 603, 678
Bsh1285I CGRYCG 1 cut(s) 439
BshTI ACCGGT 1 cut(s) 434
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 111, 173
BsmAI GTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 358
Bsp1407I TGTACA 1 cut(s) 443
Bsp143I GATC 2 cut(s) 303, 608
BspACI CCGC 6 cut(s) 47, 58, 148, 167, 325, 364
BspCNI CTCAG 3 cut(s) 36, 54, 520
BspLI GGNNCC 1 cut(s) 374
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 2 cut(s) 298, 616
BspQI GCTCTTC 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 434
BsrGI TGTACA 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 3 cut(s) 105, 237, 307
BssMI GATC 2 cut(s) 303, 608
Bst2UI CCWGG 2 cut(s) 239, 309
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 158, 681
BstAUI TGTACA 1 cut(s) 443
BstBAI YACGTR 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 232, 502
BstDEI CTNAG 3 cut(s) 23, 41, 528
BstF5I GGATG 3 cut(s) 472, 556, 734
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 2 cut(s) 306, 611
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 303, 608
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 2 cut(s) 145, 242
BstNI CCWGG 2 cut(s) 239, 309
BstNSI RCATGY 1 cut(s) 450
BstSCI CCNGG 2 cut(s) 237, 307
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 2 cut(s) 229, 679
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 608
BstYI RGATCY 1 cut(s) 608
BtsCI GGATG 3 cut(s) 472, 556, 734
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 496
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 2 cut(s) 232, 502
CfoI GCGC 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 434
Csp6I GTAC 2 cut(s) 260, 444
CspAI ACCGGT 1 cut(s) 434
CviAII CATG 8 cut(s) 93, 131, 336, 398, 447, 683, 698, 718
CviJI RGCY 8 cut(s) 151, 230, 242, 319, 375, 527, 533, 692
CviKI_1 RGCY 8 cut(s) 151, 230, 242, 319, 375, 527, 533, 692
CviQI GTAC 2 cut(s) 260, 444
DdeI CTNAG 3 cut(s) 23, 41, 528
DpnI GATC 2 cut(s) 305, 610
DpnII GATC 2 cut(s) 303, 608
Eam1104I CTCTTC 2 cut(s) 158, 681
EarI CTCTTC 2 cut(s) 158, 681
Eco57I CTGAAG 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 237, 307
EcoT22I ATGCAT 1 cut(s) 214
FaeI CATG 8 cut(s) 96, 134, 339, 401, 450, 686, 701, 721
FatI CATG 8 cut(s) 92, 130, 335, 397, 446, 682, 697, 717
FauNDI CATATG 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 149, 243, 693
FokI GGATG 3 cut(s) 459, 563, 721
Fsp4HI GCNGC 3 cut(s) 149, 243, 693
FspBI CTAG 2 cut(s) 282, 495
GlaI GCGC 1 cut(s) 235
GluI GCNGC 3 cut(s) 149, 243, 693
HapII CCGG 1 cut(s) 435
HhaI GCGC 1 cut(s) 236
Hin1II CATG 8 cut(s) 96, 134, 339, 401, 450, 686, 701, 721
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 1 cut(s) 638
HpaII CCGG 1 cut(s) 435
HphI GGTGA 2 cut(s) 94, 551
Hpy166II GTNNAC 3 cut(s) 266, 356, 444
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 5 cut(s) 181, 393, 510, 548, 585
Hpy8I GTNNAC 3 cut(s) 266, 356, 444
HpyAV CCTTC 2 cut(s) 104, 600
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 9 cut(s) 196, 212, 245, 346, 356, 620, 670, 695, 717
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 242
HpyF3I CTNAG 3 cut(s) 23, 41, 528
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 8 cut(s) 96, 134, 339, 401, 450, 686, 701, 721
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 303, 608
LguI GCTCTTC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 372
Lsp1109I GCAGC 2 cut(s) 229, 679
LweI GCATC 5 cut(s) 186, 199, 221, 341, 457
MaeI CTAG 2 cut(s) 282, 495
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 284, 458
MalI GATC 2 cut(s) 305, 610
MbiI CCGCTC 1 cut(s) 49
MboI GATC 2 cut(s) 303, 608
MboII GAAGA 4 cut(s) 127, 145, 591, 698
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 1 cut(s) 608
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 7 cut(s) 191, 312, 513, 555, 603, 653, 701
MnlI CCTC 9 cut(s) 30, 100, 166, 396, 523, 535, 592, 682, 769
Mph1103I ATGCAT 1 cut(s) 214
MseI TTAA 1 cut(s) 744
MslI CAYNNNNRTG 3 cut(s) 337, 477, 681
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 2 cut(s) 239, 309
MunI CAATTG 1 cut(s) 603
Mva1269I GAATGC 1 cut(s) 141
MvaI CCWGG 2 cut(s) 239, 309
MwoI GCNNNNNNNGC 2 cut(s) 145, 242
NdeI CATATG 1 cut(s) 121
NdeII GATC 2 cut(s) 303, 608
NlaIII CATG 8 cut(s) 96, 134, 339, 401, 450, 686, 701, 721
NlaIV GGNNCC 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 284
NsiI ATGCAT 1 cut(s) 214
NspI RCATGY 1 cut(s) 450
PciI ACATGT 1 cut(s) 446
PciSI GCTCTTC 1 cut(s) 158
PctI GAATGC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 638
PinAI ACCGGT 1 cut(s) 434
PkrI GCNGC 3 cut(s) 150, 244, 694
Ppu21I YACGTR 1 cut(s) 263
PscI ACATGT 1 cut(s) 446
Psp6I CCWGG 2 cut(s) 237, 307
PspGI CCWGG 2 cut(s) 237, 307
PspN4I GGNNCC 1 cut(s) 374
PsrI GAACNNNNNNTAC 2 cut(s) 436, 468
PsuI RGATCY 1 cut(s) 608
RsaI GTAC 2 cut(s) 261, 445
RsaNI GTAC 2 cut(s) 260, 444
RseI CAYNNNNRTG 3 cut(s) 337, 477, 681
SapI GCTCTTC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 3 cut(s) 149, 243, 693
Sau3AI GATC 2 cut(s) 303, 608
ScrFI CCNGG 2 cut(s) 239, 309
SduI GDGCHC 1 cut(s) 358
SfaNI GCATC 5 cut(s) 186, 199, 221, 341, 457
SmiMI CAYNNNNRTG 3 cut(s) 337, 477, 681
SpeI ACTAGT 1 cut(s) 281
Sse9I AATT 7 cut(s) 191, 312, 513, 555, 603, 653, 701
SsiI CCGC 6 cut(s) 47, 58, 148, 167, 325, 364
SspMI CTAG 2 cut(s) 282, 495
StyD4I CCNGG 2 cut(s) 237, 307
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 265
TasI AATT 7 cut(s) 191, 312, 513, 555, 603, 653, 701
TatI WGTACW 1 cut(s) 443
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 2 cut(s) 242, 692
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 7 cut(s) 17, 119, 204, 567, 642, 699, 714
TspRI CASTG 1 cut(s) 496
VneI GTGCAC 1 cut(s) 354
XapI RAATTY 1 cut(s) 555
XceI RCATGY 1 cut(s) 450
XspI CTAG 2 cut(s) 282, 495
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.