FvH4_5g25790

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
17262897 .. 17266630
3734 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25790.t1

Sequence Viewer

Length: 1596 bp
ATGGCTCCTCCTGCTGCTCCGGGAGAGAGGGGTTTACAAGATACGCCCACATGGACGGTGGCGGCCGTCTGTGCAGTTTTCATACTCATATCTCTAATCATAGAACATGGAATTCATGCTCTTGGAAAGTGGTTCCAGAAACGCCACAAGAAAGCCATGATTGAAGCTTTGGAGAAAATTAAAGCTGAGCTAATGCTGTTGGGATTCATATCTTTACTACTCACCGTGGGAACTCGATATCTTCCAAAGATATGCGTCCCTGCAAATATTGCAGACACGATGCTTCCATGCAAATCAAAGCCACCCTATGAAGGCGACAGTGATGATAAAGGTAAAGGAGGAGGCGGAGAAGATGGCGGTGACAGACGAAAGCTACTTTCATATGCCGAAGACATGATATGGCGTCGAGTCTTAGCTCCCAGTGGAGATTCCAGTTCTTGCTCATACGGTAAAGTTCCGTTGATATCAATATCTGGAATGCACCAGTTGCATATATTCATCTTCGTCCTTGCTGTTTTTCATGTTCTCTACAGTGTCCTCACTATGGCACTTGCGCAGGCCAAAATGAAGAAATGGAAGGCCTGGGAATCTGAGACAACATCCTTGGAATATCAATTTACAAATGATCCTGCAAGGTTTAGGTTTACTCGTCAAACATCGTTTGTGAGGCGACACTCTGGCTTTTCTACAACGCCTGGAATCAGATGGATTGTGGCATTCTTCAGGCAATTCTTCGGTTCGGTGACAAAGGTGGACTACCTGACCATGCGCCATGGATTTATAAATGCACATTTTGCTCCAAATAGTAAATTTGACTACCACAAGTACATCAAGAGATCTATGGAAGATGACTTTAAGATTCTTCTGTTGGTGGGTACAAAGCTTGAACTTATCATAATGGAGTTGGCTCAAGAAATGCACGATCGAAATACAATTGTGAAAGGGGCTCCAGTAGTAGAACCAAGCAACAAGTACTTCTGGTTCAATCGACCCGACTGGATTCTCCTCTTGATTCATTTCACACTATTTCAGAATGCATTCCAAATGGCATATTTCTTGTGGGTATCTTCTGAATTTGGCTTCGGTTCATGCTTCCACGAAAACTTGCCTCTCATAATCACTAGGGTTTGCCTTGGAGTTGCCTTACAAATCCTCTGCAGTTACATTACCTTCCCTCTTTATGCTTTGATCACACAAATGGGATCTCACATGAAGACAGCAATTTTCGAGGAGCAAACAGCGAAAGCTCTCAAGAACTGGCAGAAAGCTGCAAAGAATCGTAAAAAGTTAAGGAGCAGAGGAGGCGATGCTTCTGTTAACTCGTTTATGAGTCCGGAAAACACACCAAGCCGGGGTTCATCACCAATGCACCTCCTCCACAATCAGAAGTACAGGTCTAATCAATCGGATCTTGAAAGTGTCCTTAACTCTCCGAGATCTGTTTCTTACCAATCTGATACCGATCTATCGGAGATGGAGGGCGGCTCTTCACATAATGGTCATGGCAGTATCAATGCTTTACCAAGAGAAGATCATCGTCGACCAGAAAGGGAGGAAGGAATGCATAACACGGATTTTTCCTTTGTGCAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

532

Amino Acids

60.19

Weight (kDa)

9.21

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 9 - 287 5.4e-125 Mlo family
Mlo PF03094 287 - 462 6.6e-76 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
Acc16I TGCGCA 1 cut(s) 555
AccI GTMKAC 1 cut(s) 1540
AccIII TCCGGA 1 cut(s) 1333
AciI CCGC 4 cut(s) 62, 345, 357, 1482
AclWI GGATC 3 cut(s) 620, 1210, 1416
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 3 cut(s) 111, 809, 1073
AcuI CTGAAG 1 cut(s) 706
AcyI GRCGYC 1 cut(s) 403
AfaI GTAC 4 cut(s) 827, 877, 974, 1391
AfiI CCNNNNNNNGG 3 cut(s) 311, 544, 1352
AgsI TTSAA 4 cut(s) 164, 887, 985, 1415
AjnI CCWGG 2 cut(s) 581, 694
AjuI GAANNNNNNNTTGG 2 cut(s) 1339, 1371
AluBI AGCT 8 cut(s) 167, 185, 190, 373, 416, 883, 1247, 1268
AluI AGCT 8 cut(s) 167, 185, 190, 373, 416, 883, 1247, 1268
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 3 cut(s) 620, 1210, 1416
Aor13HI TCCGGA 1 cut(s) 1333
AoxI GGCC 3 cut(s) 63, 558, 579
ApeKI GCWGC 3 cut(s) 14, 1268, 1588
ApoI RAATTY 3 cut(s) 111, 809, 1073
Asp700I GAANNNNTTC 1 cut(s) 1037
AspLEI GCGC 2 cut(s) 556, 771
AsuC2I CCSGG 2 cut(s) 21, 1352
AsuHPI GGTGA 4 cut(s) 214, 371, 754, 1353
BanII GRGCYC 1 cut(s) 949
BbsI GAAGAC 2 cut(s) 396, 1220
BbvI GCAGC 1 cut(s) 1255
BccI CCATC 3 cut(s) 347, 699, 1468
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 583, 696
BclI TGATCA 1 cut(s) 1188
BcnI CCSGG 2 cut(s) 21, 1352
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 1 cut(s) 1122
BfmI CTRYAG 2 cut(s) 529, 1156
BglII AGATCT 2 cut(s) 836, 1436
BisI GCNGC 5 cut(s) 15, 63, 1269, 1483, 1589
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 5 cut(s) 16, 64, 1270, 1484, 1590
BmcAI AGTACT 1 cut(s) 974
Bme1390I CCNGG 4 cut(s) 21, 583, 696, 1352
BmiI GGNNCC 3 cut(s) 6, 134, 948
BmrFI CCNGG 4 cut(s) 21, 583, 696, 1352
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 2 cut(s) 270, 1297
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 2 cut(s) 396, 1220
BplI GAGNNNNNCTC 2 cut(s) 1469, 1501
BpmI CTGGAG 1 cut(s) 933
Bpu1102I GCTNAGC 1 cut(s) 186
BpuEI CTTGAG 2 cut(s) 894, 1235
BpuMI CCSGG 2 cut(s) 21, 1352
BsaBI GATNNNNATC 2 cut(s) 208, 1461
BsaHI GRCGYC 1 cut(s) 403
BsaJI CCNNGG 6 cut(s) 225, 582, 603, 772, 1132, 1351
BsaWI WCCGGW 1 cut(s) 1333
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 544, 1352
Bse1I ACTGG 6 cut(s) 420, 432, 484, 950, 1001, 1262
Bse8I GATNNNNATC 2 cut(s) 208, 1461
BseAI TCCGGA 1 cut(s) 1333
BseBI CCWGG 2 cut(s) 583, 696
BseDI CCNNGG 6 cut(s) 225, 582, 603, 772, 1132, 1351
BseGI GGATG 1 cut(s) 599
BseJI GATNNNNATC 2 cut(s) 208, 1461
BseLI CCNNNNNNNGG 3 cut(s) 311, 544, 1352
BseMII CTCAG 2 cut(s) 177, 582
BseNI ACTGG 6 cut(s) 420, 432, 484, 950, 1001, 1262
BseRI GAGGAG 5 cut(s) 354, 995, 1244, 1314, 1364
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 1255
BsgI GTGCAG 1 cut(s) 93
Bsh1285I CGRYCG 2 cut(s) 66, 925
BshFI GGCC 3 cut(s) 65, 560, 581
BsiEI CGRYCG 2 cut(s) 66, 925
BsiSI CCGG 3 cut(s) 20, 1334, 1351
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 311, 544, 1352
BsmAI GTCTC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 5 cut(s) 483, 716, 1037, 1039, 1566
BsnI GGCC 3 cut(s) 65, 560, 581
Bsp1286I GDGCHC 1 cut(s) 949
Bsp13I TCCGGA 1 cut(s) 1333
Bsp143I GATC 9 cut(s) 625, 836, 922, 1188, 1202, 1408, 1436, 1462, 1531
Bsp1720I GCTNAGC 1 cut(s) 186
Bsp19I CCATGG 1 cut(s) 772
BspACI CCGC 4 cut(s) 62, 345, 357, 1482
BspANI GGCC 3 cut(s) 65, 560, 581
BspCNI CTCAG 2 cut(s) 178, 583
BspEI TCCGGA 1 cut(s) 1333
BspLI GGNNCC 3 cut(s) 6, 134, 948
BspMAI CTGCAG 1 cut(s) 1160
BspPI GGATC 3 cut(s) 620, 1210, 1416
BspQI GCTCTTC 1 cut(s) 1492
BsrI ACTGG 6 cut(s) 420, 432, 484, 950, 1001, 1262
BssECI CCNNGG 6 cut(s) 225, 582, 603, 772, 1132, 1351
BssMI GATC 9 cut(s) 625, 836, 922, 1188, 1202, 1408, 1436, 1462, 1531
BssNI GRCGYC 1 cut(s) 403
BssT1I CCWWGG 3 cut(s) 603, 772, 1132
Bst2UI CCWGG 2 cut(s) 583, 696
Bst4CI ACNGT 5 cut(s) 58, 226, 320, 449, 533
Bst6I CTCTTC 1 cut(s) 1492
BstACI GRCGYC 1 cut(s) 403
BstAPI GCANNNNNTGC 3 cut(s) 269, 487, 794
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 3 cut(s) 186, 412, 591
BstDSI CCRYGG 2 cut(s) 225, 772
BstF5I GGATG 1 cut(s) 599
BstHHI GCGC 2 cut(s) 556, 771
BstKTI GATC 9 cut(s) 628, 839, 925, 1191, 1205, 1411, 1439, 1465, 1534
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 9 cut(s) 625, 836, 922, 1188, 1202, 1408, 1436, 1462, 1531
BstMCI CGRYCG 2 cut(s) 66, 925
BstMWI GCNNNNNNNGC 6 cut(s) 11, 71, 269, 487, 794, 1302
BstNI CCWGG 2 cut(s) 583, 696
BstSCI CCNGG 4 cut(s) 19, 581, 694, 1350
BstSFI CTRYAG 2 cut(s) 529, 1156
BstV1I GCAGC 1 cut(s) 1255
BstV2I GAAGAC 2 cut(s) 396, 1220
BstX2I RGATCY 4 cut(s) 836, 1202, 1408, 1436
BstYI RGATCY 4 cut(s) 836, 1202, 1408, 1436
BstZI CGGCCG 1 cut(s) 63
BsuRI GGCC 3 cut(s) 65, 560, 581
BtgI CCRYGG 2 cut(s) 225, 772
BtgZI GCGATG 1 cut(s) 1320
BtsCI GGATG 1 cut(s) 599
BtsIMutI CAGTG 3 cut(s) 325, 427, 538
Cac8I GCNNGC 1 cut(s) 558
CfoI GCGC 2 cut(s) 556, 771
CseI GACGC 2 cut(s) 244, 392
Csp6I GTAC 4 cut(s) 826, 876, 973, 1390
CviQI GTAC 4 cut(s) 826, 876, 973, 1390
DdeI CTNAG 3 cut(s) 186, 412, 591
DpnI GATC 9 cut(s) 627, 838, 924, 1190, 1204, 1410, 1438, 1464, 1533
DpnII GATC 9 cut(s) 625, 836, 922, 1188, 1202, 1408, 1436, 1462, 1531
EaeI YGGCCR 1 cut(s) 63
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 1492
EarI CTCTTC 1 cut(s) 1492
EciI GGCGGA 1 cut(s) 360
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 3 cut(s) 603, 772, 1132
Eco147I AGGCCT 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 949
Eco32I GATATC 2 cut(s) 239, 465
Eco52I CGGCCG 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 706
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 581, 694
EcoRV GATATC 2 cut(s) 239, 465
EcoT14I CCWWGG 3 cut(s) 603, 772, 1132
EcoT22I ATGCAT 2 cut(s) 1039, 1566
EcoT38I GRGCYC 1 cut(s) 949
ErhI CCWWGG 3 cut(s) 603, 772, 1132
FaqI GGGAC 1 cut(s) 242
FauNDI CATATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 1188
FblI GTMKAC 1 cut(s) 1540
Fnu4HI GCNGC 5 cut(s) 15, 63, 1269, 1483, 1589
FokI GGATG 1 cut(s) 586
FriOI GRGCYC 1 cut(s) 949
Fsp4HI GCNGC 5 cut(s) 15, 63, 1269, 1483, 1589
FspBI CTAG 1 cut(s) 1122
FspI TGCGCA 1 cut(s) 555
GlaI GCGC 2 cut(s) 555, 770
GluI GCNGC 5 cut(s) 15, 63, 1269, 1483, 1589
GsuI CTGGAG 1 cut(s) 933
HaeIII GGCC 3 cut(s) 65, 560, 581
HapII CCGG 3 cut(s) 20, 1334, 1351
HgaI GACGC 2 cut(s) 244, 392
HhaI GCGC 2 cut(s) 556, 771
Hin1I GRCGYC 1 cut(s) 403
Hin6I GCGC 2 cut(s) 554, 769
HinP1I GCGC 2 cut(s) 554, 769
HincII GTYRAC 2 cut(s) 1318, 1541
HindII GTYRAC 2 cut(s) 1318, 1541
HindIII AAGCTT 2 cut(s) 165, 881
HpaI GTTAAC 1 cut(s) 1318
HpaII CCGG 3 cut(s) 20, 1334, 1351
HphI GGTGA 4 cut(s) 214, 371, 754, 1353
Hpy166II GTNNAC 5 cut(s) 35, 645, 754, 1318, 1541
Hpy188I TCNGA 9 cut(s) 592, 704, 1032, 1072, 1386, 1408, 1434, 1456, 1471
Hpy188III TCNNGA 8 cut(s) 136, 474, 832, 911, 1009, 1252, 1334, 1412
Hpy8I GTNNAC 5 cut(s) 35, 645, 754, 1318, 1541
Hpy99I CGWCG 2 cut(s) 408, 1542
HpyAV CCTTC 4 cut(s) 305, 571, 1180, 1550
HpyCH4III ACNGT 5 cut(s) 58, 226, 320, 449, 533
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 71, 269, 487, 794, 1302
HpyF3I CTNAG 3 cut(s) 186, 412, 591
Hsp92I GRCGYC 1 cut(s) 403
HspAI GCGC 2 cut(s) 554, 769
Kpn2I TCCGGA 1 cut(s) 1333
Ksp22I TGATCA 1 cut(s) 1188
KspAI GTTAAC 1 cut(s) 1318
Kzo9I GATC 9 cut(s) 625, 836, 922, 1188, 1202, 1408, 1436, 1462, 1531
LguI GCTCTTC 1 cut(s) 1492
LmnI GCTCC 7 cut(s) 10, 22, 421, 802, 952, 1231, 1293
Lsp1109I GCAGC 1 cut(s) 1255
LweI GCATC 2 cut(s) 270, 1297
MaeI CTAG 1 cut(s) 1122
MaeIII GTNAC 3 cut(s) 359, 742, 1160
MalI GATC 9 cut(s) 627, 838, 924, 1190, 1204, 1410, 1438, 1464, 1533
MboI GATC 9 cut(s) 625, 836, 922, 1188, 1202, 1408, 1436, 1462, 1531
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 4 cut(s) 836, 1202, 1408, 1436
MhlI GDGCHC 1 cut(s) 949
MluCI AATT 8 cut(s) 111, 177, 614, 728, 809, 933, 1073, 1221
MlyI GAGTC 2 cut(s) 417, 1339
Mph1103I ATGCAT 2 cut(s) 1039, 1566
MroI TCCGGA 1 cut(s) 1333
MroXI GAANNNNTTC 1 cut(s) 1037
MseI TTAA 5 cut(s) 180, 855, 1289, 1317, 1425
MslI CAYNNNNRTG 1 cut(s) 1196
MspI CCGG 3 cut(s) 20, 1334, 1351
MspR9I CCNGG 4 cut(s) 21, 583, 696, 1352
MunI CAATTG 1 cut(s) 933
Mva1269I GAATGC 5 cut(s) 483, 716, 1037, 1039, 1566
MvaI CCWGG 2 cut(s) 583, 696
MwoI GCNNNNNNNGC 6 cut(s) 11, 71, 269, 487, 794, 1302
NciI CCSGG 2 cut(s) 21, 1352
NcoI CCATGG 1 cut(s) 772
NdeI CATATG 1 cut(s) 382
NdeII GATC 9 cut(s) 625, 836, 922, 1188, 1202, 1408, 1436, 1462, 1531
NlaIV GGNNCC 3 cut(s) 6, 134, 948
NmuCI GTSAC 2 cut(s) 359, 742
NsbI TGCGCA 1 cut(s) 555
NsiI ATGCAT 2 cut(s) 1039, 1566
PceI AGGCCT 1 cut(s) 581
PciSI GCTCTTC 1 cut(s) 1492
PctI GAATGC 5 cut(s) 483, 716, 1037, 1039, 1566
PdmI GAANNNNTTC 1 cut(s) 1037
PfeI GAWTC 8 cut(s) 204, 428, 587, 699, 859, 1000, 1012, 1276
PfoI TCCNGGA 1 cut(s) 19
PkrI GCNGC 5 cut(s) 16, 64, 1270, 1484, 1590
Ple19I CGATCG 1 cut(s) 925
PleI GAGTC 2 cut(s) 416, 1338
PpsI GAGTC 2 cut(s) 416, 1338
PsiI TTATAA 1 cut(s) 782
Psp6I CCWGG 2 cut(s) 581, 694
PspGI CCWGG 2 cut(s) 581, 694
PspN4I GGNNCC 3 cut(s) 6, 134, 948
PsrI GAACNNNNNNTAC 2 cut(s) 965, 997
PstI CTGCAG 1 cut(s) 1160
PsuI RGATCY 4 cut(s) 836, 1202, 1408, 1436
PvuI CGATCG 1 cut(s) 925
RsaI GTAC 4 cut(s) 827, 877, 974, 1391
RsaNI GTAC 4 cut(s) 826, 876, 973, 1390
RseI CAYNNNNRTG 1 cut(s) 1196
SalI GTCGAC 1 cut(s) 1539
SapI GCTCTTC 1 cut(s) 1492
SaqAI TTAA 5 cut(s) 180, 855, 1289, 1317, 1425
SatI GCNGC 5 cut(s) 15, 63, 1269, 1483, 1589
Sau3AI GATC 9 cut(s) 625, 836, 922, 1188, 1202, 1408, 1436, 1462, 1531
ScaI AGTACT 1 cut(s) 974
SchI GAGTC 2 cut(s) 417, 1339
ScrFI CCNGG 4 cut(s) 21, 583, 696, 1352
SduI GDGCHC 1 cut(s) 949
SfaNI GCATC 2 cut(s) 270, 1297
SfcI CTRYAG 2 cut(s) 529, 1156
SmiMI CAYNNNNRTG 1 cut(s) 1196
SmlI CTYRAG 2 cut(s) 909, 1250
SmoI CTYRAG 2 cut(s) 909, 1250
Sse9I AATT 8 cut(s) 111, 177, 614, 728, 809, 933, 1073, 1221
SseBI AGGCCT 1 cut(s) 581
SsiI CCGC 4 cut(s) 62, 345, 357, 1482
SspI AATATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 1122
StuI AGGCCT 1 cut(s) 581
StyD4I CCNGG 4 cut(s) 19, 581, 694, 1350
StyI CCWWGG 3 cut(s) 603, 772, 1132
TaaI ACNGT 5 cut(s) 58, 226, 320, 449, 533
TaqI TCGA 6 cut(s) 235, 406, 925, 988, 1227, 1540
TasI AATT 8 cut(s) 111, 177, 614, 728, 809, 933, 1073, 1221
TatI WGTACW 3 cut(s) 825, 972, 1389
TauI GCSGC 2 cut(s) 65, 1485
TfiI GAWTC 8 cut(s) 204, 428, 587, 699, 859, 1000, 1012, 1276
Tru1I TTAA 5 cut(s) 180, 855, 1289, 1317, 1425
Tru9I TTAA 5 cut(s) 180, 855, 1289, 1317, 1425
TscAI CASTG 3 cut(s) 325, 427, 538
TseFI GTSAC 2 cut(s) 359, 742
TseI GCWGC 3 cut(s) 14, 1268, 1588
Tsp45I GTSAC 2 cut(s) 359, 742
TspGWI ACGGA 2 cut(s) 447, 1586
TspRI CASTG 3 cut(s) 325, 427, 538
XapI RAATTY 3 cut(s) 111, 809, 1073
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 1540
XmnI GAANNNNTTC 1 cut(s) 1037
XspI CTAG 1 cut(s) 1122
ZrmI AGTACT 1 cut(s) 974
Zsp2I ATGCAT 2 cut(s) 1039, 1566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.