Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003545.1

Orthogroup ID

OG0010571

Physical Location & Seq

Genomic Coordinates Forward (+)

29833 .. 35245

Gene Structure 5413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003545.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atggctcctcctgctgctccgggggagaggaccctaaaagagacaccgacatggaccgtggcggtcgtctgtgcagttttcatactcatatctctaatcatagaacatggaattcatgctctaggaaagtggttccagaaacgcaacaagaaagccatgattgaagctttggagaaaattaaagctgagctaatgctgttgggattcatatccttactactcaccgtgggaactcgatatcttccaaggatatgcgtccccgcaaatattgcagacacgatgcttccctgcggtttaaagtcacaatacgcgggcgacagtgataagggagcgaagggcgacgatgataaagataaaggaggaggcggtgaccgacggaagttactttcgtatgccgaaaacatgatatggcgtcgagtcttagctcccagtggagattccggttcttgcttatacggtaaagtgccattgatatcaatatctggaatgcaccaattgcatgtattcatcttcgtcctcgctgtttttcatgttctctacagtgtcctcactatggcacttgcgcaggccaaagtggcattctttaggcaattcttcggttcggtgacaaaggtggactatctgaccatgcgccatggatttataaatatgggatctcactggaagaaagcaattttcgaggagcaaacagcgaaagctcttaagaactggcagaaagctgcaaagagtcgtaaaaagttaaggagcaaaggaggcgatgcttctgttaactcgtttatgagtccggaaaatacaccaagccggggttcatcaccaatgcacctcctccacaaccaaaagcagaggtccaatcaatcggatctcgaaagtgtccttaactccccgagatctgtttcttaccaatctgataccgatctatctgagatggagggtggctctgcacatggtcatggcagtattgatgctctaagaagagaagatcatcatcgaccagaaaggaaggaagggttgcatgatttttcctttgttcagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

345

Amino Acids

38.23

Weight (kDa)

9.54

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25790
malus_domestica	MD06G1006000.v1.1 MD06G1006100.v1.1
prunus_persica	Prupe.3G107600_v2.0.a1 Prupe.5G007700_v2.0.a1
pyrus_communis	pycom06g00550
rosa_chinensis	RchiOBHm_Chr4g0399511 RchiOBHm_Chr4g0399531 RchiOBHm_Chr7g0216251
rosa_laevigata	RLG00000002587
rosa_multiflora	Rmu_sc0000055.1_g000018 Rmu_sc0003545.1_g000009 Rmu_sc0009152.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243550
rosa_rugosa	Rorug07G0159400
rosa_samantha	Rh7AG296600 Rh7BG288800 Rh7BG288900 Rh7CG317000 Rh7DG299300
rosa_wichuraiana	Rw7G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
Acc16I	TGCGCA	1 cut(s)	564
AccII	CGCG	1 cut(s)	311
AccIII	TCCGGA	1 cut(s)	784
AciI	CCGC	5 cut(s)	62, 261, 291, 311, 366
AclWI	GGATC	2 cut(s)	661, 867
AcsI	RAATTY	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	553, 803
AflII	CTTAAG	1 cut(s)	701
AgsI	TTSAA	1 cut(s)	164
AjuI	GAANNNNNNNTTGG	4 cut(s)	563, 595, 790, 822
AluBI	AGCT	6 cut(s)	167, 185, 190, 425, 698, 719
AluI	AGCT	6 cut(s)	167, 185, 190, 425, 698, 719
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	661, 867
Ama87I	CYCGRG	1 cut(s)	883
Aor13HI	TCCGGA	1 cut(s)	784
AoxI	GGCC	1 cut(s)	567
ApeKI	GCWGC	2 cut(s)	14, 719
ApoI	RAATTY	1 cut(s)	111
AspLEI	GCGC	2 cut(s)	565, 633
AspS9I	GGNCC	3 cut(s)	30, 54, 846
AsuC2I	CCSGG	2 cut(s)	21, 803
AsuHPI	GGTGA	4 cut(s)	214, 380, 616, 804
AvaI	CYCGRG	1 cut(s)	883
AvaII	GGWCC	3 cut(s)	30, 54, 846
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	1 cut(s)	919
BcnI	CCSGG	2 cut(s)	21, 803
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	538
BfrI	CTTAAG	1 cut(s)	701
BglI	GCCNNNNNGGC	1 cut(s)	575
BglII	AGATCT	1 cut(s)	887
BisI	GCNGC	2 cut(s)	15, 720
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	2 cut(s)	16, 721
Bme1390I	CCNGG	2 cut(s)	21, 803
Bme18I	GGWCC	3 cut(s)	30, 54, 846
BmeT110I	CYCGRG	1 cut(s)	883
BmgT120I	GGNCC	3 cut(s)	30, 54, 846
BmiI	GGNNCC	3 cut(s)	6, 32, 134
BmrFI	CCNGG	2 cut(s)	21, 803
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	3 cut(s)	270, 748, 952
BmuI	ACTGGG	1 cut(s)	423
BplI	GAGNNNNNCTC	2 cut(s)	920, 952
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuMI	CCSGG	2 cut(s)	21, 803
BsaBI	GATNNNNATC	3 cut(s)	208, 912, 984
BsaHI	GRCGYC	1 cut(s)	412
BsaJI	CCNNGG	6 cut(s)	20, 57, 225, 245, 634, 802
BsaWI	WCCGGW	2 cut(s)	440, 784
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 803
Bse1I	ACTGG	3 cut(s)	429, 665, 713
Bse8I	GATNNNNATC	3 cut(s)	208, 912, 984
BseAI	TCCGGA	1 cut(s)	784
BseDI	CCNNGG	6 cut(s)	20, 57, 225, 245, 634, 802
BseJI	GATNNNNATC	3 cut(s)	208, 912, 984
BseLI	CCNNNNNNNGG	2 cut(s)	553, 803
BseMII	CTCAG	2 cut(s)	177, 912
BseNI	ACTGG	3 cut(s)	429, 665, 713
BseRI	GAGGAG	3 cut(s)	375, 695, 815
BseXI	GCAGC	1 cut(s)	706
BsgI	GTGCAG	2 cut(s)	93, 924
Bsh1236I	CGCG	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	569
BsiEI	CGRYCG	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	883
BsiSI	CCGG	4 cut(s)	20, 441, 785, 802
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	553, 803
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	2 cut(s)	492, 578
BsnI	GGCC	1 cut(s)	569
BsoBI	CYCGRG	1 cut(s)	883
Bsp13I	TCCGGA	1 cut(s)	784
Bsp143I	GATC	5 cut(s)	653, 859, 887, 913, 979
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	5 cut(s)	62, 261, 291, 311, 366
BspANI	GGCC	1 cut(s)	569
BspCNI	CTCAG	2 cut(s)	178, 913
BspEI	TCCGGA	1 cut(s)	784
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	3 cut(s)	6, 32, 134
BspPI	GGATC	2 cut(s)	661, 867
BspTI	CTTAAG	1 cut(s)	701
BsrI	ACTGG	3 cut(s)	429, 665, 713
BssECI	CCNNGG	6 cut(s)	20, 57, 225, 245, 634, 802
BssMI	GATC	5 cut(s)	653, 859, 887, 913, 979
BssNI	GRCGYC	1 cut(s)	412
BssT1I	CCWWGG	2 cut(s)	245, 634
Bst4CI	ACNGT	5 cut(s)	58, 226, 320, 458, 542
Bst6I	CTCTTC	1 cut(s)	967
BstACI	GRCGYC	1 cut(s)	412
BstAFI	CTTAAG	1 cut(s)	701
BstAPI	GCANNNNNTGC	2 cut(s)	269, 496
BstC8I	GCNNGC	2 cut(s)	313, 567
BstDEI	CTNAG	4 cut(s)	186, 421, 921, 968
BstDSI	CCRYGG	3 cut(s)	57, 225, 634
BstEII	GGTNACC	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	565, 633
BstKTI	GATC	5 cut(s)	656, 862, 890, 916, 982
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	5 cut(s)	653, 859, 887, 913, 979
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 269, 496, 575, 753
BstNSI	RCATGY	1 cut(s)	503
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	2 cut(s)	19, 801
BstSFI	CTRYAG	1 cut(s)	538
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	706
BstX2I	RGATCY	3 cut(s)	653, 859, 887
BstYI	RGATCY	3 cut(s)	653, 859, 887
BsuRI	GGCC	1 cut(s)	569
BtgI	CCRYGG	3 cut(s)	57, 225, 634
BtgZI	GCGATG	1 cut(s)	771
BtsIMutI	CAGTG	4 cut(s)	325, 436, 547, 658
Cac8I	GCNNGC	2 cut(s)	313, 567
CfoI	GCGC	2 cut(s)	565, 633
Cfr13I	GGNCC	3 cut(s)	30, 54, 846
CseI	GACGC	2 cut(s)	244, 401
DdeI	CTNAG	4 cut(s)	186, 421, 921, 968
DpnI	GATC	5 cut(s)	655, 861, 889, 915, 981
DpnII	GATC	5 cut(s)	653, 859, 887, 913, 979
DraI	TTTAAA	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	967
EarI	CTCTTC	1 cut(s)	967
Eco130I	CCWWGG	2 cut(s)	245, 634
Eco32I	GATATC	2 cut(s)	239, 474
Eco47I	GGWCC	3 cut(s)	30, 54, 846
Eco88I	CYCGRG	1 cut(s)	883
Eco91I	GGTNACC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	111
EcoRV	GATATC	2 cut(s)	239, 474
EcoT14I	CCWWGG	2 cut(s)	245, 634
ErhI	CCWWGG	2 cut(s)	245, 634
FaqI	GGGAC	1 cut(s)	242
FauI	CCCGC	2 cut(s)	268, 304
Fnu4HI	GCNGC	2 cut(s)	15, 720
Fsp4HI	GCNGC	2 cut(s)	15, 720
FspBI	CTAG	1 cut(s)	122
FspI	TGCGCA	1 cut(s)	564
GlaI	GCGC	2 cut(s)	564, 632
GluI	GCNGC	2 cut(s)	15, 720
HaeIII	GGCC	1 cut(s)	569
HapII	CCGG	4 cut(s)	20, 441, 785, 802
HgaI	GACGC	2 cut(s)	244, 401
HhaI	GCGC	2 cut(s)	565, 633
Hin1I	GRCGYC	1 cut(s)	412
Hin6I	GCGC	2 cut(s)	563, 631
HinP1I	GCGC	2 cut(s)	563, 631
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	5 cut(s)	204, 417, 437, 727, 781
HpaI	GTTAAC	1 cut(s)	769
HpaII	CCGG	4 cut(s)	20, 441, 785, 802
HphI	GGTGA	4 cut(s)	214, 380, 616, 804
Hpy166II	GTNNAC	2 cut(s)	616, 769
Hpy188I	TCNGA	4 cut(s)	624, 859, 907, 922
Hpy188III	TCNNGA	4 cut(s)	136, 483, 785, 863
Hpy8I	GTNNAC	2 cut(s)	616, 769
Hpy99I	CGWCG	3 cut(s)	344, 378, 417
HpyAV	CCTTC	3 cut(s)	328, 994, 998
HpyCH4III	ACNGT	5 cut(s)	58, 226, 320, 458, 542
HpyCH4V	TGCA	8 cut(s)	74, 272, 490, 499, 722, 820, 941, 1012
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 269, 496, 575, 753
HpyF3I	CTNAG	4 cut(s)	186, 421, 921, 968
Hsp92I	GRCGYC	1 cut(s)	412
HspAI	GCGC	2 cut(s)	563, 631
Kpn2I	TCCGGA	1 cut(s)	784
KspAI	GTTAAC	1 cut(s)	769
Kzo9I	GATC	5 cut(s)	653, 859, 887, 913, 979
LmnI	GCTCC	6 cut(s)	10, 22, 329, 430, 682, 744
Lsp1109I	GCAGC	1 cut(s)	706
LweI	GCATC	3 cut(s)	270, 748, 952
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	4 cut(s)	300, 368, 381, 604
MalI	GATC	5 cut(s)	655, 861, 889, 915, 981
MboI	GATC	5 cut(s)	653, 859, 887, 913, 979
MboII	GAAGA	6 cut(s)	233, 502, 586, 676, 984, 989
MfeI	CAATTG	1 cut(s)	494
MflI	RGATCY	3 cut(s)	653, 859, 887
MluCI	AATT	5 cut(s)	111, 177, 494, 590, 672
MlyI	GAGTC	3 cut(s)	426, 736, 790
MroI	TCCGGA	1 cut(s)	784
MseI	TTAA	6 cut(s)	180, 296, 702, 740, 768, 876
MslI	CAYNNNNRTG	2 cut(s)	49, 948
MspCI	CTTAAG	1 cut(s)	701
MspI	CCGG	4 cut(s)	20, 441, 785, 802
MspR9I	CCNGG	2 cut(s)	21, 803
MunI	CAATTG	1 cut(s)	494
Mva1269I	GAATGC	2 cut(s)	492, 578
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	5 cut(s)	11, 269, 496, 575, 753
NciI	CCSGG	2 cut(s)	21, 803
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	5 cut(s)	653, 859, 887, 913, 979
NlaIV	GGNNCC	3 cut(s)	6, 32, 134
NmuCI	GTSAC	3 cut(s)	300, 368, 604
NsbI	TGCGCA	1 cut(s)	564
NspI	RCATGY	1 cut(s)	503
PctI	GAATGC	2 cut(s)	492, 578
PfeI	GAWTC	2 cut(s)	204, 437
PkrI	GCNGC	2 cut(s)	16, 721
PleI	GAGTC	3 cut(s)	425, 735, 789
PpsI	GAGTC	3 cut(s)	425, 735, 789
PpuMI	RGGWCCY	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	644
Psp5II	RGGWCCY	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	368
PspN4I	GGNNCC	3 cut(s)	6, 32, 134
PspPI	GGNCC	3 cut(s)	30, 54, 846
PspPPI	RGGWCCY	1 cut(s)	30
PsuI	RGATCY	3 cut(s)	653, 859, 887
RseI	CAYNNNNRTG	2 cut(s)	49, 948
SaqAI	TTAA	6 cut(s)	180, 296, 702, 740, 768, 876
SatI	GCNGC	2 cut(s)	15, 720
Sau3AI	GATC	5 cut(s)	653, 859, 887, 913, 979
Sau96I	GGNCC	3 cut(s)	30, 54, 846
SchI	GAGTC	3 cut(s)	426, 736, 790
ScrFI	CCNGG	2 cut(s)	21, 803
SetI	ASST	9 cut(s)	169, 187, 192, 427, 615, 700, 721, 825, 848
SfaNI	GCATC	3 cut(s)	270, 748, 952
SfcI	CTRYAG	1 cut(s)	538
SinI	GGWCC	3 cut(s)	30, 54, 846
SmiMI	CAYNNNNRTG	2 cut(s)	49, 948
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
Sse9I	AATT	5 cut(s)	111, 177, 494, 590, 672
SsiI	CCGC	5 cut(s)	62, 261, 291, 311, 366
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	19, 801
StyI	CCWWGG	2 cut(s)	245, 634
TaaI	ACNGT	5 cut(s)	58, 226, 320, 458, 542
TaqI	TCGA	5 cut(s)	235, 415, 678, 864, 988
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	5 cut(s)	111, 177, 494, 590, 672
TfiI	GAWTC	2 cut(s)	204, 437
Tru1I	TTAA	6 cut(s)	180, 296, 702, 740, 768, 876
Tru9I	TTAA	6 cut(s)	180, 296, 702, 740, 768, 876
TscAI	CASTG	4 cut(s)	325, 436, 547, 665
TseFI	GTSAC	3 cut(s)	300, 368, 604
TseI	GCWGC	2 cut(s)	14, 719
Tsp45I	GTSAC	3 cut(s)	300, 368, 604
TspDTI	ATGAA	6 cut(s)	70, 104, 196, 496, 518, 798
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	4 cut(s)	325, 436, 547, 665
Vha464I	CTTAAG	1 cut(s)	701
VpaK11BI	GGWCC	3 cut(s)	30, 54, 846
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	1 cut(s)	503
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.