Rroxscaffold_3G00243550

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
36022013 .. 36025766
3754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243550.1

Sequence Viewer

Length: 1368 bp
ATGATTGAAGCTTTGGAGAAAATTAAAGCTGAGCTAATGCTGTTGGGATTCATATCTTTACTACTCACCGTGGGAACTCGATATCTTCCAAAGATATGCGTCCCCGCAAGTATTGCAGACACGATGCTTCCCTGCGGTTTAAATTCACAATACGCGGGCGACAGTGATAAGGGAGGGAAGGGCGACGATGATAAAGATAAAGGAGGAGGCGGTGACCGACGGAAGTTACTTTCGTACGCCGAAAACATGATATGGCGTCGAGTCTTAGCTCCCAGTGGAGATTCGGGTTCTTGCTCATACGGTAAAGTACCATTGATATCAATATCTGGAATGCACCAATTGCATGTATTCATCTTCGTCCTCGCTGTTTTTCATGTTCTCTACAGTGTCCTCACTATGGCACTTGCACAGGCCAAAATGAAGAAATGGAAGGCCTGGGAATCTGAGACAACGTCCTTGGAATACCAATTTACAAATGATCCTGCAAGGTTTAGGTTTACTCGTCAAACTTCATTTGTGAGGCGACACTCTGGCTTTTCTACAACACCTGGAATTAGATGGATCGTGGCATTCTTTAGGCAATTCTTCGGTTCGGTGACAAAGGTGGACTATCTGACCATGCGCCATGGATTTATAAATATTCTTCTGTTGGTGGGTACAAAGCTTGAACTTATCATAATGGAGATGGCCCAAGAAATGCACGATCGAAATACAATTGTTAAAGGGGCTCCAGTAGTAGAGCCAAGCAATAAGTACTTTTGGTTTAATCGACCCGAGTGGATTCTCCTCTTGATTCATTTCACATTATTTCAGAACGCATTCCAAATGGCGTATTTCTTGTGGGTATCTTCTGAATTTGGCTTCACTTCATGCTTCCACGAAAACTTGCCTCTCATAATCACAAGGGTTTGCCTTGGATTTGCCCTACAAATCCTATGCAGTTACATTACCTTCCCTCTTTATGCTTTGATCACACAAATGGGATCTCACTGGAAGAAAGCAATTTTCGAGGAGCAAACGGCAAAAGCTCTTAAGAACTGGCAGAAAGCAGCAAAGAATCGTAAAAAGTTAAGGAGCAAAGGAGGCGATGCTTCTGTTAACTCGTTTATGAGTGCGGAAAATACACCAAGCCGGGGTTCATCACCAATGCACCTCCTCCACAACCAAAAGCAGAGGTCCAATCAATCGGATCTCGAAAGTGTCCTTAACTCCCCGAGATCTGTTTCCTACCAATCTGATACCGATCTATCTGAGATGGAGGGTGGCTCTGCACATGGTCATGGCAGTATTGATGCTCTAAGAAGAGAAGATCATCATCGACCAGAAGGGAAGGAAGGGTTGCATGATTTTTCCTTTGTTCAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

51.46

Weight (kDa)

9.19

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 1 - 213 1.5e-84 Mlo family
Mlo PF03094 214 - 389 4e-76 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 635
AccII CGCG 1 cut(s) 155
AciI CCGC 5 cut(s) 105, 135, 155, 210, 1115
AclWI GGATC 4 cut(s) 473, 569, 991, 1197
AcsI RAATTY 2 cut(s) 142, 854
AcyI GRCGYC 1 cut(s) 256
AfaI GTAC 4 cut(s) 236, 309, 658, 755
AfiI CCNNNNNNNGG 2 cut(s) 397, 1133
AflII CTTAAG 1 cut(s) 1031
AgsI TTSAA 2 cut(s) 8, 668
AjnI CCWGG 2 cut(s) 434, 547
AjuI GAANNNNNNNTTGG 2 cut(s) 1120, 1152
AluBI AGCT 6 cut(s) 11, 29, 34, 269, 664, 1028
AluI AGCT 6 cut(s) 11, 29, 34, 269, 664, 1028
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 4 cut(s) 473, 569, 991, 1197
Ama87I CYCGRG 2 cut(s) 773, 1213
AoxI GGCC 3 cut(s) 411, 432, 687
ApeKI GCWGC 1 cut(s) 1049
ApoI RAATTY 2 cut(s) 142, 854
Asp700I GAANNNNTTC 1 cut(s) 818
AspLEI GCGC 1 cut(s) 624
AspS9I GGNCC 2 cut(s) 688, 1176
AsuC2I CCSGG 1 cut(s) 1133
AsuHPI GGTGA 4 cut(s) 58, 224, 607, 1134
AvaI CYCGRG 2 cut(s) 773, 1213
AvaII GGWCC 1 cut(s) 1176
BanII GRGCYC 1 cut(s) 730
BbvI GCAGC 1 cut(s) 1061
BccI CCATC 3 cut(s) 552, 679, 1249
BceAI ACGGC 1 cut(s) 1035
BciT130I CCWGG 2 cut(s) 436, 549
BclI TGATCA 1 cut(s) 969
BcnI CCSGG 1 cut(s) 1133
BcoDI GTCTC 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 382
BfrI CTTAAG 1 cut(s) 1031
BglII AGATCT 1 cut(s) 1217
BisI GCNGC 1 cut(s) 1050
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 1051
BmcAI AGTACT 1 cut(s) 755
Bme1390I CCNGG 3 cut(s) 436, 549, 1133
Bme18I GGWCC 1 cut(s) 1176
BmeT110I CYCGRG 2 cut(s) 773, 1213
BmgT120I GGNCC 2 cut(s) 688, 1176
BmiI GGNNCC 1 cut(s) 729
BmrFI CCNGG 3 cut(s) 436, 549, 1133
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 3 cut(s) 114, 1078, 1282
BmuI ACTGGG 1 cut(s) 267
BplI GAGNNNNNCTC 2 cut(s) 1250, 1282
BpmI CTGGAG 1 cut(s) 714
Bpu1102I GCTNAGC 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 1133
BsaBI GATNNNNATC 3 cut(s) 52, 1242, 1314
BsaHI GRCGYC 1 cut(s) 256
BsaJI CCNNGG 6 cut(s) 69, 435, 456, 625, 913, 1132
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 1133
Bse1I ACTGG 4 cut(s) 273, 731, 995, 1043
Bse8I GATNNNNATC 3 cut(s) 52, 1242, 1314
BseBI CCWGG 2 cut(s) 436, 549
BseDI CCNNGG 6 cut(s) 69, 435, 456, 625, 913, 1132
BseJI GATNNNNATC 3 cut(s) 52, 1242, 1314
BseLI CCNNNNNNNGG 2 cut(s) 397, 1133
BseMII CTCAG 3 cut(s) 21, 435, 1242
BseNI ACTGG 4 cut(s) 273, 731, 995, 1043
BseRI GAGGAG 4 cut(s) 219, 776, 1025, 1145
BseXI GCAGC 1 cut(s) 1061
BsgI GTGCAG 1 cut(s) 1254
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 3 cut(s) 413, 434, 689
BsiEI CGRYCG 1 cut(s) 706
BsiHKCI CYCGRG 2 cut(s) 773, 1213
BsiSI CCGG 1 cut(s) 1132
BsiWI CGTACG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 397, 1133
BsmAI GTCTC 1 cut(s) 440
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 3 cut(s) 336, 569, 818
BsnI GGCC 3 cut(s) 413, 434, 689
BsoBI CYCGRG 2 cut(s) 773, 1213
Bsp1286I GDGCHC 1 cut(s) 730
Bsp143I GATC 9 cut(s) 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309
Bsp1720I GCTNAGC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 625
BspACI CCGC 5 cut(s) 105, 135, 155, 210, 1115
BspANI GGCC 3 cut(s) 413, 434, 689
BspCNI CTCAG 3 cut(s) 22, 436, 1243
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 729
BspPI GGATC 4 cut(s) 473, 569, 991, 1197
BspTI CTTAAG 1 cut(s) 1031
BsrI ACTGG 4 cut(s) 273, 731, 995, 1043
BssECI CCNNGG 6 cut(s) 69, 435, 456, 625, 913, 1132
BssMI GATC 9 cut(s) 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309
BssNI GRCGYC 1 cut(s) 256
BssT1I CCWWGG 3 cut(s) 456, 625, 913
Bst2UI CCWGG 2 cut(s) 436, 549
Bst4CI ACNGT 4 cut(s) 70, 164, 302, 386
Bst6I CTCTTC 1 cut(s) 1297
BstACI GRCGYC 1 cut(s) 256
BstAFI CTTAAG 1 cut(s) 1031
BstAPI GCANNNNNTGC 2 cut(s) 113, 340
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 5 cut(s) 30, 265, 444, 1251, 1298
BstDSI CCRYGG 2 cut(s) 69, 625
BstEII GGTNACC 1 cut(s) 212
BstFNI CGCG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 624
BstKTI GATC 9 cut(s) 481, 564, 706, 972, 986, 1192, 1220, 1246, 1312
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 9 cut(s) 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 3 cut(s) 113, 340, 1083
BstNI CCWGG 2 cut(s) 436, 549
BstNSI RCATGY 1 cut(s) 347
BstPI GGTNACC 1 cut(s) 212
BstSCI CCNGG 3 cut(s) 434, 547, 1131
BstSFI CTRYAG 1 cut(s) 382
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 1061
BstX2I RGATCY 3 cut(s) 983, 1189, 1217
BstYI RGATCY 3 cut(s) 983, 1189, 1217
BsuRI GGCC 3 cut(s) 413, 434, 689
BtgI CCRYGG 2 cut(s) 69, 625
BtgZI GCGATG 1 cut(s) 1101
BtsIMutI CAGTG 4 cut(s) 169, 280, 391, 988
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 624
Cfr13I GGNCC 2 cut(s) 688, 1176
CseI GACGC 2 cut(s) 88, 245
Csp6I GTAC 4 cut(s) 235, 308, 657, 754
CviAII CATG 9 cut(s) 247, 344, 374, 619, 626, 870, 1274, 1280, 1343
CviQI GTAC 4 cut(s) 235, 308, 657, 754
DdeI CTNAG 5 cut(s) 30, 265, 444, 1251, 1298
DpnI GATC 9 cut(s) 480, 563, 705, 971, 985, 1191, 1219, 1245, 1311
DpnII GATC 9 cut(s) 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309
DraI TTTAAA 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 1297
EarI CTCTTC 1 cut(s) 1297
Eco130I CCWWGG 3 cut(s) 456, 625, 913
Eco147I AGGCCT 1 cut(s) 434
Eco24I GRGCYC 1 cut(s) 730
Eco32I GATATC 2 cut(s) 83, 318
Eco47I GGWCC 1 cut(s) 1176
Eco88I CYCGRG 2 cut(s) 773, 1213
Eco91I GGTNACC 1 cut(s) 212
EcoO65I GGTNACC 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 434, 547
EcoRV GATATC 2 cut(s) 83, 318
EcoT14I CCWWGG 3 cut(s) 456, 625, 913
EcoT38I GRGCYC 1 cut(s) 730
ErhI CCWWGG 3 cut(s) 456, 625, 913
FaeI CATG 9 cut(s) 250, 347, 377, 622, 629, 873, 1277, 1283, 1346
FaqI GGGAC 1 cut(s) 86
FatI CATG 9 cut(s) 246, 343, 373, 618, 625, 869, 1273, 1279, 1342
FauI CCCGC 2 cut(s) 112, 148
FbaI TGATCA 1 cut(s) 969
Fnu4HI GCNGC 1 cut(s) 1050
FriOI GRGCYC 1 cut(s) 730
Fsp4HI GCNGC 1 cut(s) 1050
GlaI GCGC 1 cut(s) 623
GluI GCNGC 1 cut(s) 1050
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 3 cut(s) 413, 434, 689
HapII CCGG 1 cut(s) 1132
HgaI GACGC 2 cut(s) 88, 245
HhaI GCGC 1 cut(s) 624
Hin1I GRCGYC 1 cut(s) 256
Hin1II CATG 9 cut(s) 250, 347, 377, 622, 629, 873, 1277, 1283, 1346
Hin6I GCGC 1 cut(s) 622
HinP1I GCGC 1 cut(s) 622
HincII GTYRAC 1 cut(s) 1099
HindII GTYRAC 1 cut(s) 1099
HindIII AAGCTT 2 cut(s) 9, 662
HinfI GANTC 7 cut(s) 48, 261, 281, 440, 781, 793, 1057
HpaI GTTAAC 1 cut(s) 1099
HpaII CCGG 1 cut(s) 1132
HphI GGTGA 4 cut(s) 58, 224, 607, 1134
Hpy166II GTNNAC 3 cut(s) 498, 607, 1099
Hpy188I TCNGA 7 cut(s) 445, 615, 813, 853, 1189, 1237, 1252
Hpy188III TCNNGA 3 cut(s) 327, 790, 1193
Hpy8I GTNNAC 3 cut(s) 498, 607, 1099
Hpy99I CGWCG 3 cut(s) 188, 222, 261
HpyAV CCTTC 6 cut(s) 172, 424, 961, 1319, 1324, 1328
HpyCH4III ACNGT 4 cut(s) 70, 164, 302, 386
HpyCH4IV ACGT 1 cut(s) 452
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 340, 1083
HpyF3I CTNAG 5 cut(s) 30, 265, 444, 1251, 1298
HpySE526I ACGT 1 cut(s) 452
Hsp92I GRCGYC 1 cut(s) 256
Hsp92II CATG 9 cut(s) 250, 347, 377, 622, 629, 873, 1277, 1283, 1346
HspAI GCGC 1 cut(s) 622
Ksp22I TGATCA 1 cut(s) 969
KspAI GTTAAC 1 cut(s) 1099
Kzo9I GATC 9 cut(s) 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309
LmnI GCTCC 4 cut(s) 274, 733, 1012, 1074
Lsp1109I GCAGC 1 cut(s) 1061
LweI GCATC 3 cut(s) 114, 1078, 1282
MaeII ACGT 1 cut(s) 452
MaeIII GTNAC 4 cut(s) 212, 225, 595, 941
MalI GATC 9 cut(s) 480, 563, 705, 971, 985, 1191, 1219, 1245, 1311
MboI GATC 9 cut(s) 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309
MboII GAAGA 9 cut(s) 77, 346, 433, 577, 635, 840, 1006, 1314, 1319
MfeI CAATTG 2 cut(s) 338, 714
MflI RGATCY 3 cut(s) 983, 1189, 1217
MhlI GDGCHC 1 cut(s) 730
MluCI AATT 9 cut(s) 21, 142, 338, 467, 552, 581, 714, 854, 1002
MlyI GAGTC 1 cut(s) 270
MroXI GAANNNNTTC 1 cut(s) 818
MseI TTAA 8 cut(s) 24, 140, 720, 765, 1032, 1070, 1098, 1206
MslI CAYNNNNRTG 2 cut(s) 977, 1278
MspCI CTTAAG 1 cut(s) 1031
MspI CCGG 1 cut(s) 1132
MspR9I CCNGG 3 cut(s) 436, 549, 1133
MunI CAATTG 2 cut(s) 338, 714
Mva1269I GAATGC 3 cut(s) 336, 569, 818
MvaI CCWGG 2 cut(s) 436, 549
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 113, 340, 1083
NciI CCSGG 1 cut(s) 1133
NcoI CCATGG 1 cut(s) 625
NdeII GATC 9 cut(s) 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309
NlaIII CATG 9 cut(s) 250, 347, 377, 622, 629, 873, 1277, 1283, 1346
NlaIV GGNNCC 1 cut(s) 729
NmuCI GTSAC 2 cut(s) 212, 595
NspI RCATGY 1 cut(s) 347
PceI AGGCCT 1 cut(s) 434
PctI GAATGC 3 cut(s) 336, 569, 818
PdmI GAANNNNTTC 1 cut(s) 818
PfeI GAWTC 6 cut(s) 48, 281, 440, 781, 793, 1057
Pfl23II CGTACG 1 cut(s) 234
PflFI GACNNNGTC 1 cut(s) 451
PkrI GCNGC 1 cut(s) 1051
Ple19I CGATCG 1 cut(s) 706
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PsiI TTATAA 1 cut(s) 635
Psp6I CCWGG 2 cut(s) 434, 547
PspEI GGTNACC 1 cut(s) 212
PspGI CCWGG 2 cut(s) 434, 547
PspLI CGTACG 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 729
PspPI GGNCC 2 cut(s) 688, 1176
PsuI RGATCY 3 cut(s) 983, 1189, 1217
PsyI GACNNNGTC 1 cut(s) 451
PvuI CGATCG 1 cut(s) 706
RsaI GTAC 4 cut(s) 236, 309, 658, 755
RsaNI GTAC 4 cut(s) 235, 308, 657, 754
RseI CAYNNNNRTG 2 cut(s) 977, 1278
SaqAI TTAA 8 cut(s) 24, 140, 720, 765, 1032, 1070, 1098, 1206
SatI GCNGC 1 cut(s) 1050
Sau3AI GATC 9 cut(s) 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309
Sau96I GGNCC 2 cut(s) 688, 1176
ScaI AGTACT 1 cut(s) 755
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 3 cut(s) 436, 549, 1133
SduI GDGCHC 1 cut(s) 730
SfaNI GCATC 3 cut(s) 114, 1078, 1282
SfcI CTRYAG 1 cut(s) 382
SinI GGWCC 1 cut(s) 1176
SmiMI CAYNNNNRTG 2 cut(s) 977, 1278
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
Sse9I AATT 9 cut(s) 21, 142, 338, 467, 552, 581, 714, 854, 1002
SseBI AGGCCT 1 cut(s) 434
SsiI CCGC 5 cut(s) 105, 135, 155, 210, 1115
SspI AATATT 1 cut(s) 640
StuI AGGCCT 1 cut(s) 434
StyD4I CCNGG 3 cut(s) 434, 547, 1131
StyI CCWWGG 3 cut(s) 456, 625, 913
TaaI ACNGT 4 cut(s) 70, 164, 302, 386
TaiI ACGT 1 cut(s) 455
TaqI TCGA 7 cut(s) 79, 259, 706, 769, 1008, 1194, 1318
TaqII GACCGA 1 cut(s) 231
TasI AATT 9 cut(s) 21, 142, 338, 467, 552, 581, 714, 854, 1002
TatI WGTACW 1 cut(s) 753
TfiI GAWTC 6 cut(s) 48, 281, 440, 781, 793, 1057
Tru1I TTAA 8 cut(s) 24, 140, 720, 765, 1032, 1070, 1098, 1206
Tru9I TTAA 8 cut(s) 24, 140, 720, 765, 1032, 1070, 1098, 1206
TscAI CASTG 4 cut(s) 169, 280, 391, 995
TseFI GTSAC 2 cut(s) 212, 595
TseI GCWGC 1 cut(s) 1049
Tsp45I GTSAC 2 cut(s) 212, 595
TspDTI ATGAA 8 cut(s) 40, 340, 362, 434, 501, 785, 858, 1128
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 4 cut(s) 169, 280, 391, 995
Tth111I GACNNNGTC 1 cut(s) 451
Vha464I CTTAAG 1 cut(s) 1031
VpaK11BI GGWCC 1 cut(s) 1176
XapI RAATTY 2 cut(s) 142, 854
XceI RCATGY 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 818
ZrmI AGTACT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.