May be involved in modulation of pathogen defense and leaf cell death
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g25790 |
| malus_domestica | MD06G1006000.v1.1 MD06G1006100.v1.1 |
| prunus_persica | Prupe.3G107600_v2.0.a1 Prupe.5G007700_v2.0.a1 |
| pyrus_communis | pycom06g00550 |
| rosa_chinensis | RchiOBHm_Chr4g0399511 RchiOBHm_Chr4g0399531 RchiOBHm_Chr7g0216251 |
| rosa_laevigata | RLG00000002587 |
| rosa_multiflora | Rmu_sc0000055.1_g000018 Rmu_sc0003545.1_g000009 Rmu_sc0009152.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00243550 |
| rosa_rugosa | Rorug07G0159400 |
| rosa_samantha | Rh7AG296600 Rh7BG288800 Rh7BG288900 Rh7CG317000 Rh7DG299300 |
| rosa_wichuraiana | Rw7G025240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 635 |
| AccII | CGCG | 1 cut(s) | 155 |
| AciI | CCGC | 5 cut(s) | 105, 135, 155, 210, 1115 |
| AclWI | GGATC | 4 cut(s) | 473, 569, 991, 1197 |
| AcsI | RAATTY | 2 cut(s) | 142, 854 |
| AcyI | GRCGYC | 1 cut(s) | 256 |
| AfaI | GTAC | 4 cut(s) | 236, 309, 658, 755 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 397, 1133 |
| AflII | CTTAAG | 1 cut(s) | 1031 |
| AgsI | TTSAA | 2 cut(s) | 8, 668 |
| AjnI | CCWGG | 2 cut(s) | 434, 547 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1120, 1152 |
| AluBI | AGCT | 6 cut(s) | 11, 29, 34, 269, 664, 1028 |
| AluI | AGCT | 6 cut(s) | 11, 29, 34, 269, 664, 1028 |
| Alw26I | GTCTC | 1 cut(s) | 440 |
| AlwI | GGATC | 4 cut(s) | 473, 569, 991, 1197 |
| Ama87I | CYCGRG | 2 cut(s) | 773, 1213 |
| AoxI | GGCC | 3 cut(s) | 411, 432, 687 |
| ApeKI | GCWGC | 1 cut(s) | 1049 |
| ApoI | RAATTY | 2 cut(s) | 142, 854 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 818 |
| AspLEI | GCGC | 1 cut(s) | 624 |
| AspS9I | GGNCC | 2 cut(s) | 688, 1176 |
| AsuC2I | CCSGG | 1 cut(s) | 1133 |
| AsuHPI | GGTGA | 4 cut(s) | 58, 224, 607, 1134 |
| AvaI | CYCGRG | 2 cut(s) | 773, 1213 |
| AvaII | GGWCC | 1 cut(s) | 1176 |
| BanII | GRGCYC | 1 cut(s) | 730 |
| BbvI | GCAGC | 1 cut(s) | 1061 |
| BccI | CCATC | 3 cut(s) | 552, 679, 1249 |
| BceAI | ACGGC | 1 cut(s) | 1035 |
| BciT130I | CCWGG | 2 cut(s) | 436, 549 |
| BclI | TGATCA | 1 cut(s) | 969 |
| BcnI | CCSGG | 1 cut(s) | 1133 |
| BcoDI | GTCTC | 1 cut(s) | 440 |
| BfmI | CTRYAG | 1 cut(s) | 382 |
| BfrI | CTTAAG | 1 cut(s) | 1031 |
| BglII | AGATCT | 1 cut(s) | 1217 |
| BisI | GCNGC | 1 cut(s) | 1050 |
| BlpI | GCTNAGC | 1 cut(s) | 30 |
| BlsI | GCNGC | 1 cut(s) | 1051 |
| BmcAI | AGTACT | 1 cut(s) | 755 |
| Bme1390I | CCNGG | 3 cut(s) | 436, 549, 1133 |
| Bme18I | GGWCC | 1 cut(s) | 1176 |
| BmeT110I | CYCGRG | 2 cut(s) | 773, 1213 |
| BmgT120I | GGNCC | 2 cut(s) | 688, 1176 |
| BmiI | GGNNCC | 1 cut(s) | 729 |
| BmrFI | CCNGG | 3 cut(s) | 436, 549, 1133 |
| BmrI | ACTGGG | 1 cut(s) | 267 |
| BmsI | GCATC | 3 cut(s) | 114, 1078, 1282 |
| BmuI | ACTGGG | 1 cut(s) | 267 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1250, 1282 |
| BpmI | CTGGAG | 1 cut(s) | 714 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 30 |
| BpuMI | CCSGG | 1 cut(s) | 1133 |
| BsaBI | GATNNNNATC | 3 cut(s) | 52, 1242, 1314 |
| BsaHI | GRCGYC | 1 cut(s) | 256 |
| BsaJI | CCNNGG | 6 cut(s) | 69, 435, 456, 625, 913, 1132 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 397, 1133 |
| Bse1I | ACTGG | 4 cut(s) | 273, 731, 995, 1043 |
| Bse8I | GATNNNNATC | 3 cut(s) | 52, 1242, 1314 |
| BseBI | CCWGG | 2 cut(s) | 436, 549 |
| BseDI | CCNNGG | 6 cut(s) | 69, 435, 456, 625, 913, 1132 |
| BseJI | GATNNNNATC | 3 cut(s) | 52, 1242, 1314 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 397, 1133 |
| BseMII | CTCAG | 3 cut(s) | 21, 435, 1242 |
| BseNI | ACTGG | 4 cut(s) | 273, 731, 995, 1043 |
| BseRI | GAGGAG | 4 cut(s) | 219, 776, 1025, 1145 |
| BseXI | GCAGC | 1 cut(s) | 1061 |
| BsgI | GTGCAG | 1 cut(s) | 1254 |
| Bsh1236I | CGCG | 1 cut(s) | 155 |
| Bsh1285I | CGRYCG | 1 cut(s) | 706 |
| BshFI | GGCC | 3 cut(s) | 413, 434, 689 |
| BsiEI | CGRYCG | 1 cut(s) | 706 |
| BsiHKCI | CYCGRG | 2 cut(s) | 773, 1213 |
| BsiSI | CCGG | 1 cut(s) | 1132 |
| BsiWI | CGTACG | 1 cut(s) | 234 |
| BslFI | GGGAC | 1 cut(s) | 86 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 397, 1133 |
| BsmAI | GTCTC | 1 cut(s) | 440 |
| BsmFI | GGGAC | 1 cut(s) | 86 |
| BsmI | GAATGC | 3 cut(s) | 336, 569, 818 |
| BsnI | GGCC | 3 cut(s) | 413, 434, 689 |
| BsoBI | CYCGRG | 2 cut(s) | 773, 1213 |
| Bsp1286I | GDGCHC | 1 cut(s) | 730 |
| Bsp143I | GATC | 9 cut(s) | 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 30 |
| Bsp19I | CCATGG | 1 cut(s) | 625 |
| BspACI | CCGC | 5 cut(s) | 105, 135, 155, 210, 1115 |
| BspANI | GGCC | 3 cut(s) | 413, 434, 689 |
| BspCNI | CTCAG | 3 cut(s) | 22, 436, 1243 |
| BspFNI | CGCG | 1 cut(s) | 155 |
| BspLI | GGNNCC | 1 cut(s) | 729 |
| BspPI | GGATC | 4 cut(s) | 473, 569, 991, 1197 |
| BspTI | CTTAAG | 1 cut(s) | 1031 |
| BsrI | ACTGG | 4 cut(s) | 273, 731, 995, 1043 |
| BssECI | CCNNGG | 6 cut(s) | 69, 435, 456, 625, 913, 1132 |
| BssMI | GATC | 9 cut(s) | 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309 |
| BssNI | GRCGYC | 1 cut(s) | 256 |
| BssT1I | CCWWGG | 3 cut(s) | 456, 625, 913 |
| Bst2UI | CCWGG | 2 cut(s) | 436, 549 |
| Bst4CI | ACNGT | 4 cut(s) | 70, 164, 302, 386 |
| Bst6I | CTCTTC | 1 cut(s) | 1297 |
| BstACI | GRCGYC | 1 cut(s) | 256 |
| BstAFI | CTTAAG | 1 cut(s) | 1031 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 113, 340 |
| BstC8I | GCNNGC | 1 cut(s) | 157 |
| BstDEI | CTNAG | 5 cut(s) | 30, 265, 444, 1251, 1298 |
| BstDSI | CCRYGG | 2 cut(s) | 69, 625 |
| BstEII | GGTNACC | 1 cut(s) | 212 |
| BstFNI | CGCG | 1 cut(s) | 155 |
| BstHHI | GCGC | 1 cut(s) | 624 |
| BstKTI | GATC | 9 cut(s) | 481, 564, 706, 972, 986, 1192, 1220, 1246, 1312 |
| BstMAI | GTCTC | 1 cut(s) | 440 |
| BstMBI | GATC | 9 cut(s) | 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309 |
| BstMCI | CGRYCG | 1 cut(s) | 706 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 113, 340, 1083 |
| BstNI | CCWGG | 2 cut(s) | 436, 549 |
| BstNSI | RCATGY | 1 cut(s) | 347 |
| BstPI | GGTNACC | 1 cut(s) | 212 |
| BstSCI | CCNGG | 3 cut(s) | 434, 547, 1131 |
| BstSFI | CTRYAG | 1 cut(s) | 382 |
| BstUI | CGCG | 1 cut(s) | 155 |
| BstV1I | GCAGC | 1 cut(s) | 1061 |
| BstX2I | RGATCY | 3 cut(s) | 983, 1189, 1217 |
| BstYI | RGATCY | 3 cut(s) | 983, 1189, 1217 |
| BsuRI | GGCC | 3 cut(s) | 413, 434, 689 |
| BtgI | CCRYGG | 2 cut(s) | 69, 625 |
| BtgZI | GCGATG | 1 cut(s) | 1101 |
| BtsIMutI | CAGTG | 4 cut(s) | 169, 280, 391, 988 |
| Cac8I | GCNNGC | 1 cut(s) | 157 |
| CfoI | GCGC | 1 cut(s) | 624 |
| Cfr13I | GGNCC | 2 cut(s) | 688, 1176 |
| CseI | GACGC | 2 cut(s) | 88, 245 |
| Csp6I | GTAC | 4 cut(s) | 235, 308, 657, 754 |
| CviAII | CATG | 9 cut(s) | 247, 344, 374, 619, 626, 870, 1274, 1280, 1343 |
| CviQI | GTAC | 4 cut(s) | 235, 308, 657, 754 |
| DdeI | CTNAG | 5 cut(s) | 30, 265, 444, 1251, 1298 |
| DpnI | GATC | 9 cut(s) | 480, 563, 705, 971, 985, 1191, 1219, 1245, 1311 |
| DpnII | GATC | 9 cut(s) | 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309 |
| DraI | TTTAAA | 1 cut(s) | 141 |
| Eam1104I | CTCTTC | 1 cut(s) | 1297 |
| EarI | CTCTTC | 1 cut(s) | 1297 |
| Eco130I | CCWWGG | 3 cut(s) | 456, 625, 913 |
| Eco147I | AGGCCT | 1 cut(s) | 434 |
| Eco24I | GRGCYC | 1 cut(s) | 730 |
| Eco32I | GATATC | 2 cut(s) | 83, 318 |
| Eco47I | GGWCC | 1 cut(s) | 1176 |
| Eco88I | CYCGRG | 2 cut(s) | 773, 1213 |
| Eco91I | GGTNACC | 1 cut(s) | 212 |
| EcoO65I | GGTNACC | 1 cut(s) | 212 |
| EcoRII | CCWGG | 2 cut(s) | 434, 547 |
| EcoRV | GATATC | 2 cut(s) | 83, 318 |
| EcoT14I | CCWWGG | 3 cut(s) | 456, 625, 913 |
| EcoT38I | GRGCYC | 1 cut(s) | 730 |
| ErhI | CCWWGG | 3 cut(s) | 456, 625, 913 |
| FaeI | CATG | 9 cut(s) | 250, 347, 377, 622, 629, 873, 1277, 1283, 1346 |
| FaqI | GGGAC | 1 cut(s) | 86 |
| FatI | CATG | 9 cut(s) | 246, 343, 373, 618, 625, 869, 1273, 1279, 1342 |
| FauI | CCCGC | 2 cut(s) | 112, 148 |
| FbaI | TGATCA | 1 cut(s) | 969 |
| Fnu4HI | GCNGC | 1 cut(s) | 1050 |
| FriOI | GRGCYC | 1 cut(s) | 730 |
| Fsp4HI | GCNGC | 1 cut(s) | 1050 |
| GlaI | GCGC | 1 cut(s) | 623 |
| GluI | GCNGC | 1 cut(s) | 1050 |
| GsuI | CTGGAG | 1 cut(s) | 714 |
| HaeIII | GGCC | 3 cut(s) | 413, 434, 689 |
| HapII | CCGG | 1 cut(s) | 1132 |
| HgaI | GACGC | 2 cut(s) | 88, 245 |
| HhaI | GCGC | 1 cut(s) | 624 |
| Hin1I | GRCGYC | 1 cut(s) | 256 |
| Hin1II | CATG | 9 cut(s) | 250, 347, 377, 622, 629, 873, 1277, 1283, 1346 |
| Hin6I | GCGC | 1 cut(s) | 622 |
| HinP1I | GCGC | 1 cut(s) | 622 |
| HincII | GTYRAC | 1 cut(s) | 1099 |
| HindII | GTYRAC | 1 cut(s) | 1099 |
| HindIII | AAGCTT | 2 cut(s) | 9, 662 |
| HinfI | GANTC | 7 cut(s) | 48, 261, 281, 440, 781, 793, 1057 |
| HpaI | GTTAAC | 1 cut(s) | 1099 |
| HpaII | CCGG | 1 cut(s) | 1132 |
| HphI | GGTGA | 4 cut(s) | 58, 224, 607, 1134 |
| Hpy166II | GTNNAC | 3 cut(s) | 498, 607, 1099 |
| Hpy188I | TCNGA | 7 cut(s) | 445, 615, 813, 853, 1189, 1237, 1252 |
| Hpy188III | TCNNGA | 3 cut(s) | 327, 790, 1193 |
| Hpy8I | GTNNAC | 3 cut(s) | 498, 607, 1099 |
| Hpy99I | CGWCG | 3 cut(s) | 188, 222, 261 |
| HpyAV | CCTTC | 6 cut(s) | 172, 424, 961, 1319, 1324, 1328 |
| HpyCH4III | ACNGT | 4 cut(s) | 70, 164, 302, 386 |
| HpyCH4IV | ACGT | 1 cut(s) | 452 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 113, 340, 1083 |
| HpyF3I | CTNAG | 5 cut(s) | 30, 265, 444, 1251, 1298 |
| HpySE526I | ACGT | 1 cut(s) | 452 |
| Hsp92I | GRCGYC | 1 cut(s) | 256 |
| Hsp92II | CATG | 9 cut(s) | 250, 347, 377, 622, 629, 873, 1277, 1283, 1346 |
| HspAI | GCGC | 1 cut(s) | 622 |
| Ksp22I | TGATCA | 1 cut(s) | 969 |
| KspAI | GTTAAC | 1 cut(s) | 1099 |
| Kzo9I | GATC | 9 cut(s) | 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309 |
| LmnI | GCTCC | 4 cut(s) | 274, 733, 1012, 1074 |
| Lsp1109I | GCAGC | 1 cut(s) | 1061 |
| LweI | GCATC | 3 cut(s) | 114, 1078, 1282 |
| MaeII | ACGT | 1 cut(s) | 452 |
| MaeIII | GTNAC | 4 cut(s) | 212, 225, 595, 941 |
| MalI | GATC | 9 cut(s) | 480, 563, 705, 971, 985, 1191, 1219, 1245, 1311 |
| MboI | GATC | 9 cut(s) | 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309 |
| MboII | GAAGA | 9 cut(s) | 77, 346, 433, 577, 635, 840, 1006, 1314, 1319 |
| MfeI | CAATTG | 2 cut(s) | 338, 714 |
| MflI | RGATCY | 3 cut(s) | 983, 1189, 1217 |
| MhlI | GDGCHC | 1 cut(s) | 730 |
| MluCI | AATT | 9 cut(s) | 21, 142, 338, 467, 552, 581, 714, 854, 1002 |
| MlyI | GAGTC | 1 cut(s) | 270 |
| MroXI | GAANNNNTTC | 1 cut(s) | 818 |
| MseI | TTAA | 8 cut(s) | 24, 140, 720, 765, 1032, 1070, 1098, 1206 |
| MslI | CAYNNNNRTG | 2 cut(s) | 977, 1278 |
| MspCI | CTTAAG | 1 cut(s) | 1031 |
| MspI | CCGG | 1 cut(s) | 1132 |
| MspR9I | CCNGG | 3 cut(s) | 436, 549, 1133 |
| MunI | CAATTG | 2 cut(s) | 338, 714 |
| Mva1269I | GAATGC | 3 cut(s) | 336, 569, 818 |
| MvaI | CCWGG | 2 cut(s) | 436, 549 |
| MvnI | CGCG | 1 cut(s) | 155 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 113, 340, 1083 |
| NciI | CCSGG | 1 cut(s) | 1133 |
| NcoI | CCATGG | 1 cut(s) | 625 |
| NdeII | GATC | 9 cut(s) | 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309 |
| NlaIII | CATG | 9 cut(s) | 250, 347, 377, 622, 629, 873, 1277, 1283, 1346 |
| NlaIV | GGNNCC | 1 cut(s) | 729 |
| NmuCI | GTSAC | 2 cut(s) | 212, 595 |
| NspI | RCATGY | 1 cut(s) | 347 |
| PceI | AGGCCT | 1 cut(s) | 434 |
| PctI | GAATGC | 3 cut(s) | 336, 569, 818 |
| PdmI | GAANNNNTTC | 1 cut(s) | 818 |
| PfeI | GAWTC | 6 cut(s) | 48, 281, 440, 781, 793, 1057 |
| Pfl23II | CGTACG | 1 cut(s) | 234 |
| PflFI | GACNNNGTC | 1 cut(s) | 451 |
| PkrI | GCNGC | 1 cut(s) | 1051 |
| Ple19I | CGATCG | 1 cut(s) | 706 |
| PleI | GAGTC | 1 cut(s) | 269 |
| PpsI | GAGTC | 1 cut(s) | 269 |
| PsiI | TTATAA | 1 cut(s) | 635 |
| Psp6I | CCWGG | 2 cut(s) | 434, 547 |
| PspEI | GGTNACC | 1 cut(s) | 212 |
| PspGI | CCWGG | 2 cut(s) | 434, 547 |
| PspLI | CGTACG | 1 cut(s) | 234 |
| PspN4I | GGNNCC | 1 cut(s) | 729 |
| PspPI | GGNCC | 2 cut(s) | 688, 1176 |
| PsuI | RGATCY | 3 cut(s) | 983, 1189, 1217 |
| PsyI | GACNNNGTC | 1 cut(s) | 451 |
| PvuI | CGATCG | 1 cut(s) | 706 |
| RsaI | GTAC | 4 cut(s) | 236, 309, 658, 755 |
| RsaNI | GTAC | 4 cut(s) | 235, 308, 657, 754 |
| RseI | CAYNNNNRTG | 2 cut(s) | 977, 1278 |
| SaqAI | TTAA | 8 cut(s) | 24, 140, 720, 765, 1032, 1070, 1098, 1206 |
| SatI | GCNGC | 1 cut(s) | 1050 |
| Sau3AI | GATC | 9 cut(s) | 478, 561, 703, 969, 983, 1189, 1217, 1243, 1309 |
| Sau96I | GGNCC | 2 cut(s) | 688, 1176 |
| ScaI | AGTACT | 1 cut(s) | 755 |
| SchI | GAGTC | 1 cut(s) | 270 |
| ScrFI | CCNGG | 3 cut(s) | 436, 549, 1133 |
| SduI | GDGCHC | 1 cut(s) | 730 |
| SfaNI | GCATC | 3 cut(s) | 114, 1078, 1282 |
| SfcI | CTRYAG | 1 cut(s) | 382 |
| SinI | GGWCC | 1 cut(s) | 1176 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 977, 1278 |
| SmlI | CTYRAG | 1 cut(s) | 1031 |
| SmoI | CTYRAG | 1 cut(s) | 1031 |
| Sse9I | AATT | 9 cut(s) | 21, 142, 338, 467, 552, 581, 714, 854, 1002 |
| SseBI | AGGCCT | 1 cut(s) | 434 |
| SsiI | CCGC | 5 cut(s) | 105, 135, 155, 210, 1115 |
| SspI | AATATT | 1 cut(s) | 640 |
| StuI | AGGCCT | 1 cut(s) | 434 |
| StyD4I | CCNGG | 3 cut(s) | 434, 547, 1131 |
| StyI | CCWWGG | 3 cut(s) | 456, 625, 913 |
| TaaI | ACNGT | 4 cut(s) | 70, 164, 302, 386 |
| TaiI | ACGT | 1 cut(s) | 455 |
| TaqI | TCGA | 7 cut(s) | 79, 259, 706, 769, 1008, 1194, 1318 |
| TaqII | GACCGA | 1 cut(s) | 231 |
| TasI | AATT | 9 cut(s) | 21, 142, 338, 467, 552, 581, 714, 854, 1002 |
| TatI | WGTACW | 1 cut(s) | 753 |
| TfiI | GAWTC | 6 cut(s) | 48, 281, 440, 781, 793, 1057 |
| Tru1I | TTAA | 8 cut(s) | 24, 140, 720, 765, 1032, 1070, 1098, 1206 |
| Tru9I | TTAA | 8 cut(s) | 24, 140, 720, 765, 1032, 1070, 1098, 1206 |
| TscAI | CASTG | 4 cut(s) | 169, 280, 391, 995 |
| TseFI | GTSAC | 2 cut(s) | 212, 595 |
| TseI | GCWGC | 1 cut(s) | 1049 |
| Tsp45I | GTSAC | 2 cut(s) | 212, 595 |
| TspDTI | ATGAA | 8 cut(s) | 40, 340, 362, 434, 501, 785, 858, 1128 |
| TspGWI | ACGGA | 1 cut(s) | 235 |
| TspRI | CASTG | 4 cut(s) | 169, 280, 391, 995 |
| Tth111I | GACNNNGTC | 1 cut(s) | 451 |
| Vha464I | CTTAAG | 1 cut(s) | 1031 |
| VpaK11BI | GGWCC | 1 cut(s) | 1176 |
| XapI | RAATTY | 2 cut(s) | 142, 854 |
| XceI | RCATGY | 1 cut(s) | 347 |
| XmnI | GAANNNNTTC | 1 cut(s) | 818 |
| ZrmI | AGTACT | 1 cut(s) | 755 |