RLG00000002587

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
36662613 .. 36666571
3959 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002587

Sequence Viewer

Length: 1569 bp
ATGGCTGCTCCTGCTGCTCCGGGGGAGAGGACCCTAAAAGAGACACCGACATGGACCGTGGCGGTCGTCTGTGCAGTTTTCATACTCATATCTCTAATCATAGAACATGGAATTCATGCTCTTGGAAAGTGGTTCCAGAAACGCAACAAGAAAGCCATGATTGAAGCTTTGGAGAAAATTAAAGCTGAGCTAATGCTGTTGGGATTCATATCTTTACTACTCACCGTGGGAACTCGATATCTTCCAAAGATATGCGTCCCCGCAAGGATTGCAGACACGATGCTTCCCTGCGGTTTAAAGTCACAATACGCGGGAGACAGTGATAAGGGAGGGAAGGGCGACGATGATAAAGATAAAGGAGGAGGCGGTGACCGACGGAAGTTACTTTCGTATGCCGAAAACATGATATGGCGTCGAGTCTTAGCTCCCAGTGGAGATTCCGGTTCTTGCTCATACGTAACTGAACCTCAACTCTTTATATTAATGAAGAAATGGAAGGCCTGGGAATCTGAGACAACGTCCTTGGAATACCAATTTACAAATGATCCTGCAAGGTTTAGGTTTACTCGTCAAACTTCATTTGTGAGGCGACACTCTGGCTTTTCTACAACACCTGGAATTAGATGGATCGTGGCATTCTTTAGGCAATTCTTCGGTTCGGTGACAAAGGTGGACTATCTGACCATGCGCCATGGATTTATAAATGTAAAACTCACTTACCTAATCCTTGATTCACTTGATTTTTGCAGTGTACCACTATGGATTTTCGCAGTGGTCTTCTTGCTTCTAAACGTTTACAAATGGTACACGCTTACTTGGTTGTCATTGGTGCCACTCATTATTCTTCTGTTGGTGGGTACAAAGCTTGAACTTATCATAATGGAGATGGCCCAAGAAATGCACGATCGAAATACAATTGTTAAAGGGGCTCCAGTAGTAGAGCCAAGCAATAAGTACTTTTGGTTTAATCGACCCGAGTGGATTCTCCTCTTGATTCATTTCACATTATTTCAGAACGCATTCCAAATGGCGTATTTCTTGTGGGTATCTTCTGAATTTGGCTTCACTTCATGCTTCCACGAAAACTTGCCTCTCATAATCACAAGGGTTTGCCTTGGATTTGCCCTACAAATCCTATGCAGTTACATTACCTTCCCTCTTTATGCTTTGATCACACAAATGGGATCTCACTGGAAGAAAGCAATTTTCGAGGAGCAAACAGCAAAAGCTCTTAAGAACTGGCAGAAAGCTGCAAAGAATCGTAAAAAGTTAAGGAGCAAAGGAGGCGATGCTTCTGTTAACTCGTTTATGAGTGCGGAAAATACACCAAGCCGGGGTTCATCACCAATGCACCTCCTCCACAACCAAAAGCAGAGGTCCAATCAATCGGATCTCGAAAGTGTCCTTAACTCCCCGAGATCTGTTTCTTACCAATCTGATACCGATCTATCTGAGATGGAGGGTGGCTCTGCACATGGTCATGGCAGTATTGATGCTCTAAGAAGAGAAGATCATCATCGACCAGAAACGAAGGAAGGGTTGCATGATTTTTCCTTTGTTCAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

523

Amino Acids

59.38

Weight (kDa)

9.23

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 9 - 151 4.5e-45 Mlo family
Mlo PF03094 161 - 456 1.2e-121 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 701
AccB1I GGYRCC 1 cut(s) 829
AccII CGCG 1 cut(s) 311
AciI CCGC 6 cut(s) 62, 261, 291, 311, 366, 1316
AclI AACGTT 1 cut(s) 792
AclWI GGATC 4 cut(s) 539, 635, 1192, 1398
AcsI RAATTY 2 cut(s) 111, 1055
AcyI GRCGYC 1 cut(s) 412
AfaI GTAC 4 cut(s) 753, 806, 859, 956
AfiI CCNNNNNNNGG 1 cut(s) 1334
AflII CTTAAG 1 cut(s) 1232
AgsI TTSAA 2 cut(s) 164, 869
AjnI CCWGG 2 cut(s) 500, 613
AjuI GAANNNNNNNTTGG 2 cut(s) 1321, 1353
AluBI AGCT 7 cut(s) 167, 185, 190, 425, 865, 1229, 1250
AluI AGCT 7 cut(s) 167, 185, 190, 425, 865, 1229, 1250
Alw26I GTCTC 3 cut(s) 35, 309, 506
AlwI GGATC 4 cut(s) 539, 635, 1192, 1398
Ama87I CYCGRG 2 cut(s) 974, 1414
AoxI GGCC 2 cut(s) 498, 888
ApeKI GCWGC 3 cut(s) 5, 14, 1250
ApoI RAATTY 2 cut(s) 111, 1055
AseI ATTAAT 1 cut(s) 482
Asp700I GAANNNNTTC 1 cut(s) 1019
AspLEI GCGC 1 cut(s) 690
AspS9I GGNCC 4 cut(s) 30, 54, 889, 1377
AsuC2I CCSGG 2 cut(s) 21, 1334
AsuHPI GGTGA 4 cut(s) 214, 380, 673, 1335
AvaI CYCGRG 2 cut(s) 974, 1414
AvaII GGWCC 3 cut(s) 30, 54, 1377
BanI GGYRCC 1 cut(s) 829
BanII GRGCYC 1 cut(s) 931
BbsI GAAGAC 1 cut(s) 769
BbvI GCAGC 1 cut(s) 1237
BccI CCATC 3 cut(s) 618, 880, 1450
BciT130I CCWGG 2 cut(s) 502, 615
BclI TGATCA 1 cut(s) 1170
BcnI CCSGG 2 cut(s) 21, 1334
BcoDI GTCTC 3 cut(s) 35, 309, 506
BfrI CTTAAG 1 cut(s) 1232
BglII AGATCT 1 cut(s) 1418
BisI GCNGC 3 cut(s) 6, 15, 1251
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 3 cut(s) 7, 16, 1252
BmcAI AGTACT 1 cut(s) 956
Bme1390I CCNGG 4 cut(s) 21, 502, 615, 1334
Bme18I GGWCC 3 cut(s) 30, 54, 1377
BmeT110I CYCGRG 2 cut(s) 974, 1414
BmgT120I GGNCC 4 cut(s) 30, 54, 889, 1377
BmiI GGNNCC 4 cut(s) 32, 134, 831, 930
BmrFI CCNGG 4 cut(s) 21, 502, 615, 1334
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 270, 1279, 1483
BmuI ACTGGG 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 769
BplI GAGNNNNNCTC 2 cut(s) 1451, 1483
BpmI CTGGAG 1 cut(s) 915
Bpu1102I GCTNAGC 1 cut(s) 186
BpuMI CCSGG 2 cut(s) 21, 1334
BsaAI YACGTR 1 cut(s) 457
BsaBI GATNNNNATC 3 cut(s) 208, 1443, 1515
BsaHI GRCGYC 1 cut(s) 412
BsaJI CCNNGG 8 cut(s) 20, 57, 225, 501, 522, 691, 1114, 1333
BsaWI WCCGGW 1 cut(s) 440
Bsc4I CCNNNNNNNGG 1 cut(s) 1334
Bse1I ACTGG 4 cut(s) 429, 932, 1196, 1244
Bse8I GATNNNNATC 3 cut(s) 208, 1443, 1515
BseBI CCWGG 2 cut(s) 502, 615
BseDI CCNNGG 8 cut(s) 20, 57, 225, 501, 522, 691, 1114, 1333
BseJI GATNNNNATC 3 cut(s) 208, 1443, 1515
BseLI CCNNNNNNNGG 1 cut(s) 1334
BseMII CTCAG 3 cut(s) 177, 501, 1443
BseNI ACTGG 4 cut(s) 429, 932, 1196, 1244
BseRI GAGGAG 4 cut(s) 375, 977, 1226, 1346
BseXI GCAGC 1 cut(s) 1237
BsgI GTGCAG 2 cut(s) 93, 1455
Bsh1236I CGCG 1 cut(s) 311
Bsh1285I CGRYCG 2 cut(s) 66, 907
BshFI GGCC 2 cut(s) 500, 890
BshNI GGYRCC 1 cut(s) 829
BsiEI CGRYCG 2 cut(s) 66, 907
BsiHKCI CYCGRG 2 cut(s) 974, 1414
BsiSI CCGG 3 cut(s) 20, 441, 1333
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 1334
BsmAI GTCTC 3 cut(s) 35, 309, 506
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 2 cut(s) 635, 1019
BsnI GGCC 2 cut(s) 500, 890
BsoBI CYCGRG 2 cut(s) 974, 1414
Bsp1286I GDGCHC 1 cut(s) 931
Bsp143I GATC 9 cut(s) 544, 627, 904, 1170, 1184, 1390, 1418, 1444, 1510
Bsp1720I GCTNAGC 1 cut(s) 186
Bsp19I CCATGG 1 cut(s) 691
BspACI CCGC 6 cut(s) 62, 261, 291, 311, 366, 1316
BspANI GGCC 2 cut(s) 500, 890
BspCNI CTCAG 3 cut(s) 178, 502, 1444
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 4 cut(s) 32, 134, 831, 930
BspPI GGATC 4 cut(s) 539, 635, 1192, 1398
BspT107I GGYRCC 1 cut(s) 829
BspTI CTTAAG 1 cut(s) 1232
BsrI ACTGG 4 cut(s) 429, 932, 1196, 1244
BssECI CCNNGG 8 cut(s) 20, 57, 225, 501, 522, 691, 1114, 1333
BssMI GATC 9 cut(s) 544, 627, 904, 1170, 1184, 1390, 1418, 1444, 1510
BssNI GRCGYC 1 cut(s) 412
BssT1I CCWWGG 3 cut(s) 522, 691, 1114
Bst2UI CCWGG 2 cut(s) 502, 615
Bst4CI ACNGT 3 cut(s) 58, 226, 320
Bst6I CTCTTC 1 cut(s) 1498
BstACI GRCGYC 1 cut(s) 412
BstAFI CTTAAG 1 cut(s) 1232
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 457
BstDEI CTNAG 5 cut(s) 186, 421, 510, 1452, 1499
BstDSI CCRYGG 3 cut(s) 57, 225, 691
BstEII GGTNACC 1 cut(s) 368
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 1 cut(s) 690
BstKTI GATC 9 cut(s) 547, 630, 907, 1173, 1187, 1393, 1421, 1447, 1513
BstMAI GTCTC 3 cut(s) 35, 309, 506
BstMBI GATC 9 cut(s) 544, 627, 904, 1170, 1184, 1390, 1418, 1444, 1510
BstMCI CGRYCG 2 cut(s) 66, 907
BstMWI GCNNNNNNNGC 4 cut(s) 11, 14, 269, 1284
BstNI CCWGG 2 cut(s) 502, 615
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 4 cut(s) 19, 500, 613, 1332
BstSNI TACGTA 1 cut(s) 457
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 1237
BstV2I GAAGAC 1 cut(s) 769
BstX2I RGATCY 3 cut(s) 1184, 1390, 1418
BstYI RGATCY 3 cut(s) 1184, 1390, 1418
BsuRI GGCC 2 cut(s) 500, 890
BtgI CCRYGG 3 cut(s) 57, 225, 691
BtgZI GCGATG 1 cut(s) 1302
BtsI GCAGTG 2 cut(s) 754, 777
BtsIMutI CAGTG 5 cut(s) 325, 436, 754, 777, 1189
CfoI GCGC 1 cut(s) 690
Cfr13I GGNCC 4 cut(s) 30, 54, 889, 1377
CseI GACGC 2 cut(s) 244, 401
Csp6I GTAC 4 cut(s) 752, 805, 858, 955
CviQI GTAC 4 cut(s) 752, 805, 858, 955
DdeI CTNAG 5 cut(s) 186, 421, 510, 1452, 1499
DpnI GATC 9 cut(s) 546, 629, 906, 1172, 1186, 1392, 1420, 1446, 1512
DpnII GATC 9 cut(s) 544, 627, 904, 1170, 1184, 1390, 1418, 1444, 1510
DraI TTTAAA 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 1498
EarI CTCTTC 1 cut(s) 1498
Eco105I TACGTA 1 cut(s) 457
Eco130I CCWWGG 3 cut(s) 522, 691, 1114
Eco147I AGGCCT 1 cut(s) 500
Eco24I GRGCYC 1 cut(s) 931
Eco32I GATATC 1 cut(s) 239
Eco47I GGWCC 3 cut(s) 30, 54, 1377
Eco88I CYCGRG 2 cut(s) 974, 1414
Eco91I GGTNACC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 500, 613
EcoRV GATATC 1 cut(s) 239
EcoT14I CCWWGG 3 cut(s) 522, 691, 1114
EcoT38I GRGCYC 1 cut(s) 931
ErhI CCWWGG 3 cut(s) 522, 691, 1114
FaqI GGGAC 1 cut(s) 242
FauI CCCGC 2 cut(s) 268, 304
FbaI TGATCA 1 cut(s) 1170
Fnu4HI GCNGC 3 cut(s) 6, 15, 1251
FriOI GRGCYC 1 cut(s) 931
Fsp4HI GCNGC 3 cut(s) 6, 15, 1251
GlaI GCGC 1 cut(s) 689
GluI GCNGC 3 cut(s) 6, 15, 1251
GsuI CTGGAG 1 cut(s) 915
HaeIII GGCC 2 cut(s) 500, 890
HapII CCGG 3 cut(s) 20, 441, 1333
HgaI GACGC 2 cut(s) 244, 401
HhaI GCGC 1 cut(s) 690
Hin1I GRCGYC 1 cut(s) 412
Hin6I GCGC 1 cut(s) 688
HinP1I GCGC 1 cut(s) 688
HincII GTYRAC 1 cut(s) 1300
HindII GTYRAC 1 cut(s) 1300
HindIII AAGCTT 2 cut(s) 165, 863
HinfI GANTC 8 cut(s) 204, 417, 437, 506, 731, 982, 994, 1258
HpaI GTTAAC 1 cut(s) 1300
HpaII CCGG 3 cut(s) 20, 441, 1333
HphI GGTGA 4 cut(s) 214, 380, 673, 1335
Hpy166II GTNNAC 6 cut(s) 564, 673, 752, 796, 807, 1300
Hpy188I TCNGA 7 cut(s) 511, 681, 1014, 1054, 1390, 1438, 1453
Hpy188III TCNNGA 3 cut(s) 136, 991, 1394
Hpy8I GTNNAC 6 cut(s) 564, 673, 752, 796, 807, 1300
Hpy99I CGWCG 3 cut(s) 344, 378, 417
HpyAV CCTTC 5 cut(s) 328, 490, 1162, 1525, 1529
HpyCH4III ACNGT 3 cut(s) 58, 226, 320
HpyCH4IV ACGT 3 cut(s) 456, 518, 792
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 14, 269, 1284
HpyF3I CTNAG 5 cut(s) 186, 421, 510, 1452, 1499
HpySE526I ACGT 3 cut(s) 456, 518, 792
Hsp92I GRCGYC 1 cut(s) 412
HspAI GCGC 1 cut(s) 688
Ksp22I TGATCA 1 cut(s) 1170
KspAI GTTAAC 1 cut(s) 1300
Kzo9I GATC 9 cut(s) 544, 627, 904, 1170, 1184, 1390, 1418, 1444, 1510
LmnI GCTCC 6 cut(s) 13, 22, 430, 934, 1213, 1275
Lsp1109I GCAGC 1 cut(s) 1237
LweI GCATC 3 cut(s) 270, 1279, 1483
MaeII ACGT 3 cut(s) 456, 518, 792
MaeIII GTNAC 6 cut(s) 300, 368, 381, 457, 661, 1142
MalI GATC 9 cut(s) 546, 629, 906, 1172, 1186, 1392, 1420, 1446, 1512
MboI GATC 9 cut(s) 544, 627, 904, 1170, 1184, 1390, 1418, 1444, 1510
MboII GAAGA 9 cut(s) 233, 499, 643, 769, 836, 1041, 1207, 1515, 1520
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 3 cut(s) 1184, 1390, 1418
MhlI GDGCHC 1 cut(s) 931
MluCI AATT 8 cut(s) 111, 177, 533, 618, 647, 915, 1055, 1203
MlyI GAGTC 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 1019
MseI TTAA 9 cut(s) 180, 296, 482, 921, 966, 1233, 1271, 1299, 1407
MslI CAYNNNNRTG 3 cut(s) 49, 1178, 1479
MspCI CTTAAG 1 cut(s) 1232
MspI CCGG 3 cut(s) 20, 441, 1333
MspR9I CCNGG 4 cut(s) 21, 502, 615, 1334
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 2 cut(s) 635, 1019
MvaI CCWGG 2 cut(s) 502, 615
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 4 cut(s) 11, 14, 269, 1284
NciI CCSGG 2 cut(s) 21, 1334
NcoI CCATGG 1 cut(s) 691
NdeII GATC 9 cut(s) 544, 627, 904, 1170, 1184, 1390, 1418, 1444, 1510
NlaIV GGNNCC 4 cut(s) 32, 134, 831, 930
NmuCI GTSAC 3 cut(s) 300, 368, 661
PceI AGGCCT 1 cut(s) 500
PctI GAATGC 2 cut(s) 635, 1019
PdmI GAANNNNTTC 1 cut(s) 1019
PfeI GAWTC 7 cut(s) 204, 437, 506, 731, 982, 994, 1258
PflFI GACNNNGTC 1 cut(s) 517
PkrI GCNGC 3 cut(s) 7, 16, 1252
Ple19I CGATCG 1 cut(s) 907
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Ppu21I YACGTR 1 cut(s) 457
PpuMI RGGWCCY 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 482
PsiI TTATAA 1 cut(s) 701
Psp1406I AACGTT 1 cut(s) 792
Psp5II RGGWCCY 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 500, 613
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 2 cut(s) 500, 613
PspN4I GGNNCC 4 cut(s) 32, 134, 831, 930
PspPI GGNCC 4 cut(s) 30, 54, 889, 1377
PspPPI RGGWCCY 1 cut(s) 30
PsuI RGATCY 3 cut(s) 1184, 1390, 1418
PsyI GACNNNGTC 1 cut(s) 517
PvuI CGATCG 1 cut(s) 907
RsaI GTAC 4 cut(s) 753, 806, 859, 956
RsaNI GTAC 4 cut(s) 752, 805, 858, 955
RseI CAYNNNNRTG 3 cut(s) 49, 1178, 1479
SaqAI TTAA 9 cut(s) 180, 296, 482, 921, 966, 1233, 1271, 1299, 1407
SatI GCNGC 3 cut(s) 6, 15, 1251
Sau3AI GATC 9 cut(s) 544, 627, 904, 1170, 1184, 1390, 1418, 1444, 1510
Sau96I GGNCC 4 cut(s) 30, 54, 889, 1377
ScaI AGTACT 1 cut(s) 956
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 4 cut(s) 21, 502, 615, 1334
SduI GDGCHC 1 cut(s) 931
SfaNI GCATC 3 cut(s) 270, 1279, 1483
SinI GGWCC 3 cut(s) 30, 54, 1377
SmiMI CAYNNNNRTG 3 cut(s) 49, 1178, 1479
SmlI CTYRAG 1 cut(s) 1232
SmoI CTYRAG 1 cut(s) 1232
SnaBI TACGTA 1 cut(s) 457
Sse9I AATT 8 cut(s) 111, 177, 533, 618, 647, 915, 1055, 1203
SseBI AGGCCT 1 cut(s) 500
SsiI CCGC 6 cut(s) 62, 261, 291, 311, 366, 1316
StuI AGGCCT 1 cut(s) 500
StyD4I CCNGG 4 cut(s) 19, 500, 613, 1332
StyI CCWWGG 3 cut(s) 522, 691, 1114
TaaI ACNGT 3 cut(s) 58, 226, 320
TaiI ACGT 3 cut(s) 459, 521, 795
TaqI TCGA 7 cut(s) 235, 415, 907, 970, 1209, 1395, 1519
TaqII GACCGA 1 cut(s) 387
TasI AATT 8 cut(s) 111, 177, 533, 618, 647, 915, 1055, 1203
TatI WGTACW 1 cut(s) 954
TfiI GAWTC 7 cut(s) 204, 437, 506, 731, 982, 994, 1258
Tru1I TTAA 9 cut(s) 180, 296, 482, 921, 966, 1233, 1271, 1299, 1407
Tru9I TTAA 9 cut(s) 180, 296, 482, 921, 966, 1233, 1271, 1299, 1407
TscAI CASTG 5 cut(s) 325, 436, 754, 777, 1196
TseFI GTSAC 3 cut(s) 300, 368, 661
TseI GCWGC 3 cut(s) 5, 14, 1250
Tsp45I GTSAC 3 cut(s) 300, 368, 661
TspDTI ATGAA 8 cut(s) 70, 104, 196, 500, 567, 986, 1059, 1329
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 5 cut(s) 325, 436, 754, 777, 1196
Tth111I GACNNNGTC 1 cut(s) 517
Vha464I CTTAAG 1 cut(s) 1232
VpaK11BI GGWCC 3 cut(s) 30, 54, 1377
VspI ATTAAT 1 cut(s) 482
XapI RAATTY 2 cut(s) 111, 1055
XmnI GAANNNNTTC 1 cut(s) 1019
ZrmI AGTACT 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.