Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010571

Physical Location & Seq

Genomic Coordinates Reverse (-)

16834396 .. 16836178

Gene Structure 1783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37165

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTCCTCCTGCTGCTCCGGGGGAGAGGACCCTAAAAGAGACACCGACATGGACCGTGGCGGTCGTCTGTGCAGTTTTCATACTCATATCTCTAATCATAGAACATGGAATTCATGCTCTAGGAAAGTGGTTCCAGAAACGCAACAAGAAAGCCATGATTGAAGCTTTGGAGAAAATTAAAGCTGAGCTAATGCTGTTGGGATTCATATCCTTACTACTCACCGTGGGAACTCGATATCTTCCAAAGATATGCGTCCCCGCAAATATTGCAGACACGATGCTTCCCTGCGGTTTAAAGTCACAATACGCCGGCGACAGTGATAAGGGAGGGAAGGGCGACGATGATAAAGATAAAGGAGGAGGCGGTGACCGACGGAAGTTACTTTCGTATGCCGAAAACATGATATGGCGTCGAGTCTTAGCTCCCAGTGGAGATTCCGGTTCTTGCTCATACATGAAGAAATGGAAGGCCTGGGAATCTGAGACAACGTCCTTGGAATACCAATTTACAAATGATCCTGCAAGGTTTAGGTTTACTCGTCAAACTTCATTTGTGAGGCGACACTCTGGCTTTTCTACAACACCTGGAATCAGATGGATCGTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

203

Amino Acids

22.62

Weight (kDa)

9.56

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	9 - 150	4.5e-46	Mlo family
Mlo	PF03094	152 - 203	2.4e-15	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25790
malus_domestica	MD06G1006000.v1.1 MD06G1006100.v1.1
prunus_persica	Prupe.3G107600_v2.0.a1 Prupe.5G007700_v2.0.a1
pyrus_communis	pycom06g00550
rosa_chinensis	RchiOBHm_Chr4g0399511 RchiOBHm_Chr4g0399531 RchiOBHm_Chr7g0216251
rosa_laevigata	RLG00000002587
rosa_multiflora	Rmu_sc0000055.1_g000018 Rmu_sc0003545.1_g000009 Rmu_sc0009152.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243550
rosa_rugosa	Rorug07G0159400
rosa_samantha	Rh7AG296600 Rh7BG288800 Rh7BG288900 Rh7CG317000 Rh7DG299300
rosa_wichuraiana	Rw7G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	62, 261, 291, 366
AclWI	GGATC	2 cut(s)	512, 608
AcsI	RAATTY	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	473, 586
AluBI	AGCT	4 cut(s)	167, 185, 190, 425
AluI	AGCT	4 cut(s)	167, 185, 190, 425
Alw26I	GTCTC	2 cut(s)	35, 479
AlwI	GGATC	2 cut(s)	512, 608
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	30, 54
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	214, 380
AvaII	GGWCC	2 cut(s)	30, 54
BccI	CCATC	1 cut(s)	591
BciT130I	CCWGG	2 cut(s)	475, 588
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	35, 479
BfaI	CTAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	15
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	3 cut(s)	21, 475, 588
Bme18I	GGWCC	2 cut(s)	30, 54
BmgT120I	GGNCC	2 cut(s)	30, 54
BmiI	GGNNCC	3 cut(s)	6, 32, 134
BmrFI	CCNGG	3 cut(s)	21, 475, 588
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	423
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	412
BsaJI	CCNNGG	5 cut(s)	20, 57, 225, 474, 495
BsaWI	WCCGGW	1 cut(s)	440
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	475, 588
BseDI	CCNNGG	5 cut(s)	20, 57, 225, 474, 495
BseJI	GATNNNNATC	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	177, 474
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	375
BsgI	GTGCAG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	473
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	3 cut(s)	20, 312, 441
BslFI	GGGAC	1 cut(s)	242
BsmAI	GTCTC	2 cut(s)	35, 479
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	517, 600
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	4 cut(s)	62, 261, 291, 366
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	2 cut(s)	178, 475
BspLI	GGNNCC	3 cut(s)	6, 32, 134
BspPI	GGATC	2 cut(s)	512, 608
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	429
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	5 cut(s)	20, 57, 225, 474, 495
BssMI	GATC	2 cut(s)	517, 600
BssNI	GRCGYC	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	475, 588
Bst4CI	ACNGT	3 cut(s)	58, 226, 320
BstACI	GRCGYC	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	3 cut(s)	186, 421, 483
BstDSI	CCRYGG	2 cut(s)	57, 225
BstEII	GGTNACC	1 cut(s)	368
BstKTI	GATC	2 cut(s)	520, 603
BstMAI	GTCTC	2 cut(s)	35, 479
BstMBI	GATC	2 cut(s)	517, 600
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 269
BstNI	CCWGG	2 cut(s)	475, 588
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	19, 473, 586
BsuRI	GGCC	1 cut(s)	473
BtgI	CCRYGG	2 cut(s)	57, 225
BtsIMutI	CAGTG	2 cut(s)	325, 436
Cac8I	GCNNGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	30, 54
CseI	GACGC	2 cut(s)	244, 401
CviAII	CATG	6 cut(s)	51, 107, 116, 157, 403, 457
CviJI	RGCY	8 cut(s)	5, 155, 167, 185, 190, 425, 473, 573
CviKI_1	RGCY	8 cut(s)	5, 155, 167, 185, 190, 425, 473, 573
DdeI	CTNAG	3 cut(s)	186, 421, 483
DpnI	GATC	2 cut(s)	519, 602
DpnII	GATC	2 cut(s)	517, 600
DraI	TTTAAA	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	239
Eco47I	GGWCC	2 cut(s)	30, 54
Eco91I	GGTNACC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	473, 586
EcoRV	GATATC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	6 cut(s)	54, 110, 119, 160, 406, 460
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	6 cut(s)	50, 106, 115, 156, 402, 456
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	3 cut(s)	20, 312, 441
HgaI	GACGC	2 cut(s)	244, 401
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	6 cut(s)	54, 110, 119, 160, 406, 460
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	5 cut(s)	204, 417, 437, 479, 591
HpaII	CCGG	3 cut(s)	20, 312, 441
HphI	GGTGA	2 cut(s)	214, 380
Hpy166II	GTNNAC	1 cut(s)	537
Hpy188I	TCNGA	2 cut(s)	484, 596
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	537
Hpy99I	CGWCG	3 cut(s)	344, 378, 417
HpyAV	CCTTC	2 cut(s)	328, 463
HpyCH4III	ACNGT	3 cut(s)	58, 226, 320
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	3 cut(s)	74, 272, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 269
HpyF3I	CTNAG	3 cut(s)	186, 421, 483
HpySE526I	ACGT	1 cut(s)	491
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	6 cut(s)	54, 110, 119, 160, 406, 460
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	517, 600
LmnI	GCTCC	3 cut(s)	10, 22, 430
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	3 cut(s)	300, 368, 381
MalI	GATC	2 cut(s)	519, 602
MboI	GATC	2 cut(s)	517, 600
MboII	GAAGA	2 cut(s)	233, 472
MluCI	AATT	3 cut(s)	111, 177, 506
MlyI	GAGTC	1 cut(s)	426
MnlI	CCTC	6 cut(s)	18, 21, 323, 353, 356, 552
MreI	CGCCGGCG	1 cut(s)	311
MroNI	GCCGGC	1 cut(s)	311
MseI	TTAA	3 cut(s)	180, 296, 610
MslI	CAYNNNNRTG	1 cut(s)	49
MspI	CCGG	3 cut(s)	20, 312, 441
MspR9I	CCNGG	3 cut(s)	21, 475, 588
MvaI	CCWGG	2 cut(s)	475, 588
MwoI	GCNNNNNNNGC	2 cut(s)	11, 269
NaeI	GCCGGC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	517, 600
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	6 cut(s)	54, 110, 119, 160, 406, 460
NlaIV	GGNNCC	3 cut(s)	6, 32, 134
NmuCI	GTSAC	2 cut(s)	300, 368
PceI	AGGCCT	1 cut(s)	473
PdiI	GCCGGC	1 cut(s)	313
PfeI	GAWTC	4 cut(s)	204, 437, 479, 591
PflFI	GACNNNGTC	1 cut(s)	490
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	473, 586
PspEI	GGTNACC	1 cut(s)	368
PspGI	CCWGG	2 cut(s)	473, 586
PspN4I	GGNNCC	3 cut(s)	6, 32, 134
PspPI	GGNCC	2 cut(s)	30, 54
PspPPI	RGGWCCY	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	3 cut(s)	180, 296, 610
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	517, 600
Sau96I	GGNCC	2 cut(s)	30, 54
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	3 cut(s)	21, 475, 588
SetI	ASST	8 cut(s)	169, 187, 192, 427, 494, 530, 536, 589
SfaNI	GCATC	1 cut(s)	270
SgrAI	CRCCGGYG	1 cut(s)	311
SinI	GGWCC	2 cut(s)	30, 54
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	111, 177, 506
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	4 cut(s)	62, 261, 291, 366
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	19, 473, 586
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	3 cut(s)	58, 226, 320
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	2 cut(s)	235, 415
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	3 cut(s)	111, 177, 506
TfiI	GAWTC	4 cut(s)	204, 437, 479, 591
Tru1I	TTAA	3 cut(s)	180, 296, 610
Tru9I	TTAA	3 cut(s)	180, 296, 610
TscAI	CASTG	2 cut(s)	325, 436
TseFI	GTSAC	2 cut(s)	300, 368
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	300, 368
TspDTI	ATGAA	5 cut(s)	70, 104, 196, 473, 540
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	2 cut(s)	325, 436
Tth111I	GACNNNGTC	1 cut(s)	490
VpaK11BI	GGWCC	2 cut(s)	30, 54
XapI	RAATTY	1 cut(s)	111
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.