RchiOBHm_Chr4g0399511

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010571
Physical Location & Seq
Reverse (-)
16823191 .. 16824927
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37163

Sequence Viewer

Length: 930 bp
ATGCGCCATGGATTTATAAATGCACATTTTGCTCCAAATAGCAAATTTGATTTCCATAAGTACATCAAGAGATCTATGGAAGATGATTTTAAGGTGGTTGTGGGTATTAGTGTACCACTATGGATTTTCGCAGTGGTCTTCTTGCTTCTAAACGTTTACATTACTGATCAAAATATTTCTACTTTATCACACCCAGAATGGTACACGCTTACTTGGTTGTCATTGGCGCCACTCATTATTCTTCTGTTGGTGGGTACAAAGCTTGAACTTATCATAATGGAGATGGCCCAAGAAATGCACGATCGAAATACAATTGTTAAAGGGGCTCCAGTAGTAGAGCCAAGCAATAAGTACTTTTGGTTTAATCGACCCGAGTGGATTCTCCTCTTGATTCATTTCACATTATTTCAGACTGAATTTGGCTTCACTTCATGCTTTCACGAAAACTTGCCTCTCATAATCACAAGGGTTTGCCTTGGATTTGTCCTACAAATCCTATGCAGTTACATTACCTTCCCTCTTTATGCTTTGATCACACAAATGGGATCTCACTGGAAGAAAGCAATTTTCGAGGATCAAACAGCGAAAGCTCTTAAGAACTGGCAGAAAGCTGCAAAGAGTCGTAAAAAGTTAAGAAGCAAAGGAGGCGATGCTTCTGTTAACTCGTTTATGAGTCCGGAAAATACACCAAGCCGGGGTTCATCACCAATGCACCTCCTCCACAACCAAAAGCAGAGGTCCAATCAATCGGATCTCGAAAGTGTCCTTAACTCCCCGAGATCTGTTTCTTACCAATCTGATACCGATCTATCTGAGATGGAGGGTGGCTCTGCACATGGTCATGGCAGTATTGATGCTCTAAGAAGAGAAGATCATCATCGACCAGAAAGGAAGGAAGGGTTGCATGATTTTTCCTTTGTTCAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

309

Amino Acids

35.49

Weight (kDa)

8.35

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 1 - 243 2.3e-96 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 676
AclI AACGTT 1 cut(s) 153
AclWI GGATC 3 cut(s) 553, 582, 759
AcsI RAATTY 2 cut(s) 44, 416
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 5 cut(s) 62, 114, 203, 256, 353
AfiI CCNNNNNNNGG 1 cut(s) 695
AflII CTTAAG 1 cut(s) 593
AgsI TTSAA 1 cut(s) 266
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AluBI AGCT 3 cut(s) 262, 590, 611
AluI AGCT 3 cut(s) 262, 590, 611
AlwI GGATC 3 cut(s) 553, 582, 759
Ama87I CYCGRG 2 cut(s) 371, 775
Aor13HI TCCGGA 1 cut(s) 676
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 611
ApoI RAATTY 2 cut(s) 44, 416
AspLEI GCGC 2 cut(s) 6, 229
AspS9I GGNCC 2 cut(s) 286, 738
AsuC2I CCSGG 1 cut(s) 695
AsuHPI GGTGA 1 cut(s) 696
AvaI CYCGRG 2 cut(s) 371, 775
AvaII GGWCC 1 cut(s) 738
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 598
BccI CCATC 2 cut(s) 277, 811
BclI TGATCA 2 cut(s) 166, 531
BcnI CCSGG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 230
BfrI CTTAAG 1 cut(s) 593
BglII AGATCT 2 cut(s) 71, 779
BisI GCNGC 1 cut(s) 612
BlsI GCNGC 1 cut(s) 613
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 695
Bme18I GGWCC 1 cut(s) 738
BmeT110I CYCGRG 2 cut(s) 371, 775
BmgT120I GGNCC 2 cut(s) 286, 738
BmiI GGNNCC 2 cut(s) 228, 327
BmrFI CCNGG 1 cut(s) 695
BmsI GCATC 2 cut(s) 640, 844
BpiI GAAGAC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 812, 844
BpmI CTGGAG 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 695
BsaBI GATNNNNATC 2 cut(s) 804, 876
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 3 cut(s) 7, 475, 694
BsaWI WCCGGW 1 cut(s) 676
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse1I ACTGG 3 cut(s) 329, 557, 605
Bse8I GATNNNNATC 2 cut(s) 804, 876
BseAI TCCGGA 1 cut(s) 676
BseDI CCNNGG 3 cut(s) 7, 475, 694
BseJI GATNNNNATC 2 cut(s) 804, 876
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMII CTCAG 1 cut(s) 804
BseNI ACTGG 3 cut(s) 329, 557, 605
BseRI GAGGAG 2 cut(s) 374, 707
BseXI GCAGC 1 cut(s) 598
BsgI GTGCAG 1 cut(s) 816
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 226
BsiEI CGRYCG 1 cut(s) 304
BsiHKCI CYCGRG 2 cut(s) 371, 775
BsiSI CCGG 2 cut(s) 677, 694
BslI CCNNNNNNNGG 1 cut(s) 695
BsnI GGCC 1 cut(s) 287
BsoBI CYCGRG 2 cut(s) 371, 775
Bsp1286I GDGCHC 1 cut(s) 328
Bsp13I TCCGGA 1 cut(s) 676
Bsp19I CCATGG 1 cut(s) 7
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 805
BspEI TCCGGA 1 cut(s) 676
BspLI GGNNCC 2 cut(s) 228, 327
BspPI GGATC 3 cut(s) 553, 582, 759
BspT107I GGYRCC 1 cut(s) 226
BspTI CTTAAG 1 cut(s) 593
BsrI ACTGG 3 cut(s) 329, 557, 605
BssECI CCNNGG 3 cut(s) 7, 475, 694
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 2 cut(s) 7, 475
Bst6I CTCTTC 1 cut(s) 859
BstACI GRCGYC 1 cut(s) 227
BstAFI CTTAAG 1 cut(s) 593
BstAPI GCANNNNNTGC 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 813, 860
BstDSI CCRYGG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 2 cut(s) 6, 229
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 2 cut(s) 29, 645
BstSCI CCNGG 1 cut(s) 693
BstV1I GCAGC 1 cut(s) 598
BstV2I GAAGAC 1 cut(s) 130
BstX2I RGATCY 4 cut(s) 71, 545, 751, 779
BstYI RGATCY 4 cut(s) 71, 545, 751, 779
BsuRI GGCC 1 cut(s) 287
BtgI CCRYGG 1 cut(s) 7
BtgZI GCGATG 1 cut(s) 663
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 138, 550
CfoI GCGC 2 cut(s) 6, 229
Cfr13I GGNCC 2 cut(s) 286, 738
Csp6I GTAC 5 cut(s) 61, 113, 202, 255, 352
CviAII CATG 5 cut(s) 8, 432, 836, 842, 905
CviQI GTAC 5 cut(s) 61, 113, 202, 255, 352
DdeI CTNAG 2 cut(s) 813, 860
DinI GGCGCC 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 859
EarI CTCTTC 1 cut(s) 859
Eco130I CCWWGG 2 cut(s) 7, 475
Eco24I GRGCYC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 738
Eco88I CYCGRG 2 cut(s) 371, 775
EcoT14I CCWWGG 2 cut(s) 7, 475
EcoT38I GRGCYC 1 cut(s) 328
EgeI GGCGCC 1 cut(s) 228
EheI GGCGCC 1 cut(s) 228
ErhI CCWWGG 2 cut(s) 7, 475
FaeI CATG 5 cut(s) 11, 435, 839, 845, 908
FatI CATG 5 cut(s) 7, 431, 835, 841, 904
FbaI TGATCA 2 cut(s) 166, 531
Fnu4HI GCNGC 1 cut(s) 612
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 1 cut(s) 612
GlaI GCGC 2 cut(s) 5, 228
GluI GCNGC 1 cut(s) 612
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 1 cut(s) 287
HapII CCGG 2 cut(s) 677, 694
HhaI GCGC 2 cut(s) 6, 229
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 5 cut(s) 11, 435, 839, 845, 908
Hin6I GCGC 2 cut(s) 4, 227
HinP1I GCGC 2 cut(s) 4, 227
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 4 cut(s) 379, 391, 619, 673
HpaI GTTAAC 1 cut(s) 661
HpaII CCGG 2 cut(s) 677, 694
HphI GGTGA 1 cut(s) 696
Hpy166II GTNNAC 4 cut(s) 113, 157, 204, 661
Hpy188I TCNGA 4 cut(s) 411, 751, 799, 814
Hpy188III TCNNGA 5 cut(s) 67, 388, 440, 677, 755
Hpy8I GTNNAC 4 cut(s) 113, 157, 204, 661
HpyAV CCTTC 3 cut(s) 523, 886, 890
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 7 cut(s) 23, 298, 501, 614, 712, 833, 904
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 645
HpyF3I CTNAG 2 cut(s) 813, 860
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 5 cut(s) 11, 435, 839, 845, 908
HspAI GCGC 2 cut(s) 4, 227
KasI GGCGCC 1 cut(s) 226
Kpn2I TCCGGA 1 cut(s) 676
Ksp22I TGATCA 2 cut(s) 166, 531
KspAI GTTAAC 1 cut(s) 661
LmnI GCTCC 2 cut(s) 37, 331
LpnPI CCDG 7 cut(s) 207, 342, 538, 586, 690, 707, 897
Lsp1109I GCAGC 1 cut(s) 598
LweI GCATC 2 cut(s) 640, 844
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 503
MboII GAAGA 6 cut(s) 92, 130, 233, 568, 876, 881
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 4 cut(s) 71, 545, 751, 779
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 4 cut(s) 44, 312, 416, 564
Mly113I GGCGCC 1 cut(s) 227
MlyI GAGTC 2 cut(s) 628, 682
MnlI CCTC 9 cut(s) 395, 462, 528, 565, 638, 725, 728, 729, 814
MroI TCCGGA 1 cut(s) 676
MseI TTAA 7 cut(s) 90, 318, 363, 594, 632, 660, 768
MslI CAYNNNNRTG 2 cut(s) 539, 840
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 2 cut(s) 677, 694
MspR9I CCNGG 1 cut(s) 695
MunI CAATTG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 29, 645
NarI GGCGCC 1 cut(s) 227
NciI CCSGG 1 cut(s) 695
NcoI CCATGG 1 cut(s) 7
NlaIII CATG 5 cut(s) 11, 435, 839, 845, 908
NlaIV GGNNCC 2 cut(s) 228, 327
PfeI GAWTC 2 cut(s) 379, 391
PkrI GCNGC 1 cut(s) 613
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 2 cut(s) 627, 681
PluTI GGCGCC 1 cut(s) 230
PpsI GAGTC 2 cut(s) 627, 681
PsiI TTATAA 1 cut(s) 17
Psp1406I AACGTT 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 228, 327
PspPI GGNCC 2 cut(s) 286, 738
PsuI RGATCY 4 cut(s) 71, 545, 751, 779
PvuI CGATCG 1 cut(s) 304
RsaI GTAC 5 cut(s) 62, 114, 203, 256, 353
RsaNI GTAC 5 cut(s) 61, 113, 202, 255, 352
RseI CAYNNNNRTG 2 cut(s) 539, 840
SaqAI TTAA 7 cut(s) 90, 318, 363, 594, 632, 660, 768
SatI GCNGC 1 cut(s) 612
Sau96I GGNCC 2 cut(s) 286, 738
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 2 cut(s) 628, 682
ScrFI CCNGG 1 cut(s) 695
SduI GDGCHC 1 cut(s) 328
SetI ASST 8 cut(s) 96, 156, 264, 515, 592, 613, 717, 740
SfaNI GCATC 2 cut(s) 640, 844
SfoI GGCGCC 1 cut(s) 228
SinI GGWCC 1 cut(s) 738
SmiMI CAYNNNNRTG 2 cut(s) 539, 840
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
Sse9I AATT 4 cut(s) 44, 312, 416, 564
SspDI GGCGCC 1 cut(s) 226
SspI AATATT 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 693
StyI CCWWGG 2 cut(s) 7, 475
TaiI ACGT 1 cut(s) 156
TaqI TCGA 5 cut(s) 304, 367, 570, 756, 880
TasI AATT 4 cut(s) 44, 312, 416, 564
TatI WGTACW 2 cut(s) 60, 351
TfiI GAWTC 2 cut(s) 379, 391
Tru1I TTAA 7 cut(s) 90, 318, 363, 594, 632, 660, 768
Tru9I TTAA 7 cut(s) 90, 318, 363, 594, 632, 660, 768
TscAI CASTG 2 cut(s) 138, 557
TseI GCWGC 1 cut(s) 611
TspDTI ATGAA 3 cut(s) 383, 420, 690
TspRI CASTG 2 cut(s) 138, 557
Vha464I CTTAAG 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 738
XapI RAATTY 2 cut(s) 44, 416
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.