Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010571

Physical Location & Seq

Genomic Coordinates Forward (+)

27137976 .. 27140660

Gene Structure 2685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG288800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTCCTCCTGCTGCTCCGGGGGAGAGGACCCTAAAAGAGACACCGACATGGACCGTGGCGGTCGTCTGTGCAGTTTTCATACTCATATCTCTAATCATAGAACATGGAATTCATGCTCTTGGAAAGTGGTTCCAGAAACGCAACAAGAAAGCCATGATTGAAGCTTTGGAGAAAATTAAAGCTGAGCTAATGCTGTTGGGATTCATATCTTTACTACTCACCGTGGGAACTCGATATCTTCCAAAGATATGTGTCCCCGCAAGCATTGCAGACACGATGCTTCCCTGCGATTTAAAGTCACAATACGCGGGCGACAGTGATGAGGGAGGGAAGGGCGACGATGATAAAGATAAAGGAGGAGGCGGTGACCGACGGAAGTTACTTTCGTATGCCGAAAACATGATATGGCGTCGAGTCTTAGCTCCCAGTGGAGATTCCGGTTCTTGCTCATACATGAAGAAATGGAAGGCCTGGGAATCTGAGACAACGTCCTTGGAATACCAATTTACAAACGATCCTGCAAGGTTTAGGTTTACACGTCAAACTTCATTTGTGAGGCGACACTCTGGCTTTTCTACAACACCTGGAATTAGATGGATCGTGGCATTCTTTAGGCAATTCTTCGGTTCGGTGACAAAGGTGGACTATCTGACCATGCGCCATGGATTTATAAATGTAAGTAATTATGCTTCAAACAACGTAGGTCGTAAGCTGAGACAAATCAGCACCAAAAATCTCAGCATAGAATTCGAACTCATTAGTCGTACGGCCAAACCGAAACCCAGCTGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

265

Amino Acids

29.82

Weight (kDa)

9.64

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	9 - 150	4.2e-46	Mlo family
Mlo	PF03094	152 - 231	3.2e-32	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25790
malus_domestica	MD06G1006000.v1.1 MD06G1006100.v1.1
prunus_persica	Prupe.3G107600_v2.0.a1 Prupe.5G007700_v2.0.a1
pyrus_communis	pycom06g00550
rosa_chinensis	RchiOBHm_Chr4g0399511 RchiOBHm_Chr4g0399531 RchiOBHm_Chr7g0216251
rosa_laevigata	RLG00000002587
rosa_multiflora	Rmu_sc0000055.1_g000018 Rmu_sc0003545.1_g000009 Rmu_sc0009152.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243550
rosa_rugosa	Rorug07G0159400
rosa_samantha	Rh7AG296600 Rh7BG288800 Rh7BG288900 Rh7CG317000 Rh7DG299300
rosa_wichuraiana	Rw7G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	674
AccII	CGCG	1 cut(s)	311
AciI	CCGC	4 cut(s)	62, 261, 311, 366
AclWI	GGATC	2 cut(s)	512, 608
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	2 cut(s)	111, 749
AcyI	GRCGYC	1 cut(s)	412
AfaI	GTAC	1 cut(s)	769
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	2 cut(s)	164, 696
AjiI	CACGTC	1 cut(s)	542
AjnI	CCWGG	2 cut(s)	473, 586
AluBI	AGCT	6 cut(s)	167, 185, 190, 425, 715, 789
AluI	AGCT	6 cut(s)	167, 185, 190, 425, 715, 789
Alw26I	GTCTC	3 cut(s)	35, 479, 712
AlwI	GGATC	2 cut(s)	512, 608
AoxI	GGCC	2 cut(s)	471, 771
ApeKI	GCWGC	2 cut(s)	14, 789
ApoI	RAATTY	2 cut(s)	111, 749
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	2 cut(s)	30, 54
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	3 cut(s)	214, 380, 646
AsuII	TTCGAA	1 cut(s)	753
AvaII	GGWCC	2 cut(s)	30, 54
BarI	GAAGNNNNNNTAC	2 cut(s)	676, 708
BbvI	GCAGC	1 cut(s)	776
BccI	CCATC	1 cut(s)	591
BceAI	ACGGC	1 cut(s)	786
BcgI	CGANNNNNNTGC	2 cut(s)	733, 767
BciT130I	CCWGG	2 cut(s)	475, 588
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	3 cut(s)	35, 479, 712
BisI	GCNGC	2 cut(s)	15, 790
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	2 cut(s)	16, 791
Bme1390I	CCNGG	3 cut(s)	21, 475, 588
Bme18I	GGWCC	2 cut(s)	30, 54
BmgBI	CACGTC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	30, 54
BmiI	GGNNCC	3 cut(s)	6, 32, 134
BmrFI	CCNGG	3 cut(s)	21, 475, 588
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	423
Bpu1102I	GCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	753
BpuMI	CCSGG	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	412
BsaJI	CCNNGG	6 cut(s)	20, 57, 225, 474, 495, 664
BsaWI	WCCGGW	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	475, 588
BseDI	CCNNGG	6 cut(s)	20, 57, 225, 474, 495, 664
BseJI	GATNNNNATC	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	4 cut(s)	177, 474, 707, 754
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	776
BseYI	CCCAGC	1 cut(s)	785
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	473, 773
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	20, 441
BsiWI	CGTACG	1 cut(s)	767
BslFI	GGGAC	1 cut(s)	242
BsmAI	GTCTC	3 cut(s)	35, 479, 712
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	473, 773
Bsp119I	TTCGAA	1 cut(s)	753
Bsp143I	GATC	2 cut(s)	517, 600
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	4 cut(s)	62, 261, 311, 366
BspANI	GGCC	2 cut(s)	473, 773
BspCNI	CTCAG	4 cut(s)	178, 475, 708, 753
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	3 cut(s)	6, 32, 134
BspPI	GGATC	2 cut(s)	512, 608
BspT104I	TTCGAA	1 cut(s)	753
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	429
BssECI	CCNNGG	6 cut(s)	20, 57, 225, 474, 495, 664
BssMI	GATC	2 cut(s)	517, 600
BssNI	GRCGYC	1 cut(s)	412
BssT1I	CCWWGG	2 cut(s)	495, 664
Bst2UI	CCWGG	2 cut(s)	475, 588
Bst4CI	ACNGT	3 cut(s)	58, 226, 320
BstACI	GRCGYC	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	753
BstC8I	GCNNGC	2 cut(s)	265, 313
BstDEI	CTNAG	5 cut(s)	186, 421, 483, 716, 740
BstDSI	CCRYGG	3 cut(s)	57, 225, 664
BstEII	GGTNACC	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	2 cut(s)	520, 603
BstMAI	GTCTC	3 cut(s)	35, 479, 712
BstMBI	GATC	2 cut(s)	517, 600
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 269
BstNI	CCWGG	2 cut(s)	475, 588
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	19, 473, 586
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	776
BsuRI	GGCC	2 cut(s)	473, 773
BtgI	CCRYGG	3 cut(s)	57, 225, 664
BtrI	CACGTC	1 cut(s)	542
BtsIMutI	CAGTG	2 cut(s)	325, 436
Cac8I	GCNNGC	2 cut(s)	265, 313
CfoI	GCGC	1 cut(s)	663
Cfr13I	GGNCC	2 cut(s)	30, 54
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	768
CviAII	CATG	8 cut(s)	51, 107, 116, 157, 403, 457, 658, 665
CviQI	GTAC	1 cut(s)	768
DdeI	CTNAG	5 cut(s)	186, 421, 483, 716, 740
DpnI	GATC	2 cut(s)	519, 602
DpnII	GATC	2 cut(s)	517, 600
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	771
Eco130I	CCWWGG	2 cut(s)	495, 664
Eco147I	AGGCCT	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	239
Eco47I	GGWCC	2 cut(s)	30, 54
Eco91I	GGTNACC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	368
EcoRI	GAATTC	2 cut(s)	111, 749
EcoRII	CCWGG	2 cut(s)	473, 586
EcoRV	GATATC	1 cut(s)	239
EcoT14I	CCWWGG	2 cut(s)	495, 664
ErhI	CCWWGG	2 cut(s)	495, 664
FaeI	CATG	8 cut(s)	54, 110, 119, 160, 406, 460, 661, 668
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	8 cut(s)	50, 106, 115, 156, 402, 456, 657, 664
FauI	CCCGC	2 cut(s)	268, 304
Fnu4HI	GCNGC	2 cut(s)	15, 790
Fsp4HI	GCNGC	2 cut(s)	15, 790
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	2 cut(s)	15, 790
GsaI	CCCAGC	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	473, 773
HapII	CCGG	2 cut(s)	20, 441
HgaI	GACGC	1 cut(s)	401
HhaI	GCGC	1 cut(s)	663
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	8 cut(s)	54, 110, 119, 160, 406, 460, 661, 668
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	4 cut(s)	204, 417, 437, 479
HpaII	CCGG	2 cut(s)	20, 441
HphI	GGTGA	3 cut(s)	214, 380, 646
Hpy166II	GTNNAC	2 cut(s)	537, 646
Hpy188I	TCNGA	2 cut(s)	484, 654
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	2 cut(s)	537, 646
Hpy99I	CGWCG	3 cut(s)	344, 378, 417
HpyAV	CCTTC	2 cut(s)	328, 463
HpyCH4III	ACNGT	3 cut(s)	58, 226, 320
HpyCH4IV	ACGT	3 cut(s)	491, 541, 702
HpyCH4V	TGCA	3 cut(s)	74, 272, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 269
HpyF3I	CTNAG	5 cut(s)	186, 421, 483, 716, 740
HpySE526I	ACGT	3 cut(s)	491, 541, 702
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	8 cut(s)	54, 110, 119, 160, 406, 460, 661, 668
HspAI	GCGC	1 cut(s)	661
Kzo9I	GATC	2 cut(s)	517, 600
LmnI	GCTCC	3 cut(s)	10, 22, 430
Lsp1109I	GCAGC	1 cut(s)	776
LweI	GCATC	1 cut(s)	270
MaeII	ACGT	3 cut(s)	491, 541, 702
MaeIII	GTNAC	4 cut(s)	300, 368, 381, 634
MalI	GATC	2 cut(s)	519, 602
MboI	GATC	2 cut(s)	517, 600
MboII	GAAGA	3 cut(s)	233, 472, 616
MluCI	AATT	7 cut(s)	111, 177, 506, 591, 620, 685, 749
MlyI	GAGTC	1 cut(s)	426
MnlI	CCTC	7 cut(s)	18, 21, 319, 323, 353, 356, 552
MseI	TTAA	2 cut(s)	180, 296
MslI	CAYNNNNRTG	1 cut(s)	49
MspA1I	CMGCKG	1 cut(s)	789
MspI	CCGG	2 cut(s)	20, 441
MspR9I	CCNGG	3 cut(s)	21, 475, 588
Mva1269I	GAATGC	1 cut(s)	608
MvaI	CCWGG	2 cut(s)	475, 588
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	11, 269
NciI	CCSGG	1 cut(s)	21
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	2 cut(s)	517, 600
NlaIII	CATG	8 cut(s)	54, 110, 119, 160, 406, 460, 661, 668
NlaIV	GGNNCC	3 cut(s)	6, 32, 134
NmuCI	GTSAC	3 cut(s)	300, 368, 634
NspV	TTCGAA	1 cut(s)	753
PceI	AGGCCT	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	1 cut(s)	776
PctI	GAATGC	1 cut(s)	608
PfeI	GAWTC	3 cut(s)	204, 437, 479
Pfl23II	CGTACG	1 cut(s)	767
PflFI	GACNNNGTC	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	16, 791
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	674
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	473, 586
PspEI	GGTNACC	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	785
PspGI	CCWGG	2 cut(s)	473, 586
PspLI	CGTACG	1 cut(s)	767
PspN4I	GGNNCC	3 cut(s)	6, 32, 134
PspPI	GGNCC	2 cut(s)	30, 54
PspPPI	RGGWCCY	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	789
RsaI	GTAC	1 cut(s)	769
RsaNI	GTAC	1 cut(s)	768
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	180, 296
SatI	GCNGC	2 cut(s)	15, 790
Sau3AI	GATC	2 cut(s)	517, 600
Sau96I	GGNCC	2 cut(s)	30, 54
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	3 cut(s)	21, 475, 588
SfaNI	GCATC	1 cut(s)	270
SfuI	TTCGAA	1 cut(s)	753
SinI	GGWCC	2 cut(s)	30, 54
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	7 cut(s)	111, 177, 506, 591, 620, 685, 749
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	4 cut(s)	62, 261, 311, 366
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	19, 473, 586
StyI	CCWWGG	2 cut(s)	495, 664
TaaI	ACNGT	3 cut(s)	58, 226, 320
TaiI	ACGT	3 cut(s)	494, 544, 705
TaqI	TCGA	3 cut(s)	235, 415, 753
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	7 cut(s)	111, 177, 506, 591, 620, 685, 749
TfiI	GAWTC	3 cut(s)	204, 437, 479
Tru1I	TTAA	2 cut(s)	180, 296
Tru9I	TTAA	2 cut(s)	180, 296
TscAI	CASTG	2 cut(s)	325, 436
TseFI	GTSAC	3 cut(s)	300, 368, 634
TseI	GCWGC	2 cut(s)	14, 789
Tsp45I	GTSAC	3 cut(s)	300, 368, 634
TspDTI	ATGAA	5 cut(s)	70, 104, 196, 473, 540
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	2 cut(s)	325, 436
Tth111I	GACNNNGTC	1 cut(s)	490
VpaK11BI	GGWCC	2 cut(s)	30, 54
XapI	RAATTY	2 cut(s)	111, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.