Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000055.1

Orthogroup ID

OG0010571

Physical Location & Seq

Genomic Coordinates Reverse (-)

130794 .. 131183

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000055.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgggatctcactggaagaaagcaattttcgaggagcaaacagcgaaagctcttaagaactggcagaaagctgcaaagagtcgtaaaaagttaaggagcaaaggaggcgatgcttctgttaactcgtttatgagtccggaaaatacaccaagccggggttcatcaccaatgcacctcctccacaaccaaaagcagaggtccaatcaatcggatctcgaaagtgtccttaactccccgagatctgtttcttaccaatctgataccgatctatctgagatggagggtggctctgcacatggtcatggcagtattgatgctctaagaagagaagatcatcatcgaccagaaaggaaggaagggttgcatgatttttcctttgttcagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

129

Amino Acids

14.48

Weight (kDa)

9.52

Isoelectric Point (pI)

67.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25790
malus_domestica	MD06G1006000.v1.1 MD06G1006100.v1.1
prunus_persica	Prupe.3G107600_v2.0.a1 Prupe.5G007700_v2.0.a1
pyrus_communis	pycom06g00550
rosa_chinensis	RchiOBHm_Chr4g0399511 RchiOBHm_Chr4g0399531 RchiOBHm_Chr7g0216251
rosa_laevigata	RLG00000002587
rosa_multiflora	Rmu_sc0000055.1_g000018 Rmu_sc0003545.1_g000009 Rmu_sc0009152.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243550
rosa_rugosa	Rorug07G0159400
rosa_samantha	Rh7AG296600 Rh7BG288800 Rh7BG288900 Rh7CG317000 Rh7DG299300
rosa_wichuraiana	Rw7G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	136
AclWI	GGATC	2 cut(s)	13, 219
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflII	CTTAAG	1 cut(s)	53
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	2 cut(s)	50, 71
AluI	AGCT	2 cut(s)	50, 71
AlwI	GGATC	2 cut(s)	13, 219
Ama87I	CYCGRG	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	156
AvaI	CYCGRG	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	53
BglII	AGATCT	1 cut(s)	239
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	100, 304
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpuMI	CCSGG	1 cut(s)	155
BsaBI	GATNNNNATC	2 cut(s)	264, 336
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	17, 65
Bse8I	GATNNNNATC	2 cut(s)	264, 336
BseAI	TCCGGA	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	154
BseJI	GATNNNNATC	2 cut(s)	264, 336
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	17, 65
BseRI	GAGGAG	2 cut(s)	47, 167
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	137, 154
BslI	CCNNNNNNNGG	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	235
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	5 cut(s)	5, 211, 239, 265, 331
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	136
BspPI	GGATC	2 cut(s)	13, 219
BspTI	CTTAAG	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	17, 65
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	5 cut(s)	5, 211, 239, 265, 331
Bst6I	CTCTTC	1 cut(s)	319
BstAFI	CTTAAG	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	273, 320
BstKTI	GATC	5 cut(s)	8, 214, 242, 268, 334
BstMBI	GATC	5 cut(s)	5, 211, 239, 265, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	3 cut(s)	5, 211, 239
BstYI	RGATCY	3 cut(s)	5, 211, 239
BtgZI	GCGATG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	198
CviAII	CATG	3 cut(s)	296, 302, 365
CviJI	RGCY	5 cut(s)	50, 71, 153, 288, 385
CviKI_1	RGCY	5 cut(s)	50, 71, 153, 288, 385
DdeI	CTNAG	2 cut(s)	273, 320
DpnI	GATC	5 cut(s)	7, 213, 241, 267, 333
DpnII	GATC	5 cut(s)	5, 211, 239, 265, 331
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	235
FaeI	CATG	3 cut(s)	299, 305, 368
FaiI	YATR	4 cut(s)	131, 297, 303, 366
FatI	CATG	3 cut(s)	295, 301, 364
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
HapII	CCGG	2 cut(s)	137, 154
Hin1II	CATG	3 cut(s)	299, 305, 368
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	79, 133
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	137, 154
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	211, 259, 274
Hpy188III	TCNNGA	2 cut(s)	137, 215
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	346, 350
HpyCH4V	TGCA	4 cut(s)	74, 172, 293, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	273, 320
Hsp92II	CATG	3 cut(s)	299, 305, 368
Kpn2I	TCCGGA	1 cut(s)	136
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	5, 211, 239, 265, 331
LmnI	GCTCC	2 cut(s)	34, 96
LpnPI	CCDG	4 cut(s)	46, 150, 167, 357
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	2 cut(s)	100, 304
MalI	GATC	5 cut(s)	7, 213, 241, 267, 333
MboI	GATC	5 cut(s)	5, 211, 239, 265, 331
MboII	GAAGA	3 cut(s)	28, 336, 341
MflI	RGATCY	3 cut(s)	5, 211, 239
MluCI	AATT	1 cut(s)	24
MlyI	GAGTC	2 cut(s)	88, 142
MnlI	CCTC	6 cut(s)	25, 98, 185, 188, 189, 274
MroI	TCCGGA	1 cut(s)	136
MseI	TTAA	4 cut(s)	54, 92, 120, 228
MslI	CAYNNNNRTG	1 cut(s)	300
MspCI	CTTAAG	1 cut(s)	53
MspI	CCGG	2 cut(s)	137, 154
MspR9I	CCNGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	5 cut(s)	5, 211, 239, 265, 331
NlaIII	CATG	3 cut(s)	299, 305, 368
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	2 cut(s)	87, 141
PpsI	GAGTC	2 cut(s)	87, 141
PspPI	GGNCC	1 cut(s)	198
PsuI	RGATCY	3 cut(s)	5, 211, 239
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	4 cut(s)	54, 92, 120, 228
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	5 cut(s)	5, 211, 239, 265, 331
Sau96I	GGNCC	1 cut(s)	198
SchI	GAGTC	2 cut(s)	88, 142
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	4 cut(s)	52, 73, 177, 200
SfaNI	GCATC	2 cut(s)	100, 304
SinI	GGWCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	153
TaqI	TCGA	3 cut(s)	30, 216, 340
TasI	AATT	1 cut(s)	24
Tru1I	TTAA	4 cut(s)	54, 92, 120, 228
Tru9I	TTAA	4 cut(s)	54, 92, 120, 228
TscAI	CASTG	1 cut(s)	17
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.