Rh7BG288900

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010571
Physical Location & Seq
Forward (+)
27140984 .. 27142219
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG288900.1

Sequence Viewer

Length: 819 bp
ATGCTAGCTTTAGGTACTGATCAAAATATTTCTACTTTGTCATACCCAGAATGGTACACGCTTACTTGGTTGTCGTTGGCGCCACTCATTATTCTTCTTTTGGTGGGTACAAAGCTTGAACTTATCATAATGGAGATGGCCCAAGAAATGCACGATCGAAATACAATTGTTAAAGGGGCTCCAGTAATAGAGCCAAGCAATAAGTACTTTTGGTTTAATCGACCCGAGTGGATTCTCCTCTTGATTCATTTCACATTATTTCAGAACGCATTCCAAATGGCGTATTTCTTGTGGGTATCTGCTGAATTTGGATTCACTTCATGCTTCCACGAAAACTTGCCTCTTATAATCACAAGGGTTTGCCTTGGATTTGCCCTACAAATCCTATGCAGTTACATTACCTTCCCTCTTTATGCTTTGATTACACAAATGGGATCTCACTGGAAGAAAGCAATTTTCGAGGAGCAAACAGCAAAAGCTCTTAAGAACTGGCAGAAAGCTGCAAAGAATCGTAAAAAGTTAAGGAGCAAAGGAGGCGATGCTTCTGTTAACTCGTTTATGAGTCCGGAAAATACACCAAGCCGGGGTTCATCGCCAATGCACCTCCTCCACAACCAAAAGCACAGGTCCAATCAATCGGATCTCGAAAGTGTCCTTAACTCCCCGAGATCTGTTTCTTACCGATCTGATACCGATCTATCTGAGATGGAGGGTGGCTCTGCACATGGTCATGGCAGTATTGATGCTCTAAGAAGAGAAGATCATCATCGACCAGAAAGGAAGGAAGGGTTGCATGATTTTTCCTTTGTTCAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

272

Amino Acids

31.14

Weight (kDa)

7.81

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 16 - 206 7.3e-83 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 79
AccIII TCCGGA 1 cut(s) 565
AclWI GGATC 2 cut(s) 442, 648
AcsI RAATTY 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 4 cut(s) 16, 56, 109, 206
AfiI CCNNNNNNNGG 1 cut(s) 584
AflII CTTAAG 1 cut(s) 482
AgsI TTSAA 1 cut(s) 119
AjuI GAANNNNNNNTTGG 2 cut(s) 571, 603
AluBI AGCT 4 cut(s) 8, 115, 479, 500
AluI AGCT 4 cut(s) 8, 115, 479, 500
AlwI GGATC 2 cut(s) 442, 648
Ama87I CYCGRG 2 cut(s) 224, 664
Aor13HI TCCGGA 1 cut(s) 565
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 500
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 139, 627
AsuC2I CCSGG 1 cut(s) 584
AsuNHI GCTAGC 1 cut(s) 4
AvaI CYCGRG 2 cut(s) 224, 664
AvaII GGWCC 1 cut(s) 627
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 487
BccI CCATC 2 cut(s) 130, 700
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 584
BfaI CTAG 1 cut(s) 5
BfoI RGCGCY 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 482
BglII AGATCT 1 cut(s) 668
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 584
Bme18I GGWCC 1 cut(s) 627
BmeT110I CYCGRG 2 cut(s) 224, 664
BmgT120I GGNCC 2 cut(s) 139, 627
BmiI GGNNCC 2 cut(s) 81, 180
BmrFI CCNGG 1 cut(s) 584
BmsI GCATC 2 cut(s) 529, 733
BmtI GCTAGC 1 cut(s) 8
BplI GAGNNNNNCTC 2 cut(s) 701, 733
BpmI CTGGAG 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 584
BsaBI GATNNNNATC 2 cut(s) 693, 765
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 364, 583
BsaWI WCCGGW 1 cut(s) 565
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 3 cut(s) 182, 446, 494
Bse8I GATNNNNATC 2 cut(s) 693, 765
BseAI TCCGGA 1 cut(s) 565
BseDI CCNNGG 2 cut(s) 364, 583
BseJI GATNNNNATC 2 cut(s) 693, 765
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMII CTCAG 1 cut(s) 693
BseNI ACTGG 3 cut(s) 182, 446, 494
BseRI GAGGAG 3 cut(s) 227, 476, 596
BseXI GCAGC 1 cut(s) 487
BsgI GTGCAG 1 cut(s) 705
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 79
BsiEI CGRYCG 1 cut(s) 157
BsiHKCI CYCGRG 2 cut(s) 224, 664
BsiSI CCGG 2 cut(s) 566, 583
BslI CCNNNNNNNGG 1 cut(s) 584
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 1 cut(s) 140
BsoBI CYCGRG 2 cut(s) 224, 664
Bsp1286I GDGCHC 1 cut(s) 181
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 8 cut(s) 19, 154, 434, 640, 668, 683, 694, 760
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 694
BspEI TCCGGA 1 cut(s) 565
BspLI GGNNCC 2 cut(s) 81, 180
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 2 cut(s) 442, 648
BspT107I GGYRCC 1 cut(s) 79
BspTI CTTAAG 1 cut(s) 482
BsrI ACTGG 3 cut(s) 182, 446, 494
BssECI CCNNGG 2 cut(s) 364, 583
BssMI GATC 8 cut(s) 19, 154, 434, 640, 668, 683, 694, 760
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 748
BstACI GRCGYC 1 cut(s) 80
BstAFI CTTAAG 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 702, 749
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 8 cut(s) 22, 157, 437, 643, 671, 686, 697, 763
BstMBI GATC 8 cut(s) 19, 154, 434, 640, 668, 683, 694, 760
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 487
BstX2I RGATCY 3 cut(s) 434, 640, 668
BstYI RGATCY 3 cut(s) 434, 640, 668
BsuRI GGCC 1 cut(s) 140
BtgZI GCGATG 2 cut(s) 552, 576
BtsIMutI CAGTG 1 cut(s) 439
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 139, 627
Csp6I GTAC 4 cut(s) 15, 55, 108, 205
CviAII CATG 4 cut(s) 321, 725, 731, 794
CviQI GTAC 4 cut(s) 15, 55, 108, 205
DdeI CTNAG 2 cut(s) 702, 749
DinI GGCGCC 1 cut(s) 81
DpnI GATC 8 cut(s) 21, 156, 436, 642, 670, 685, 696, 762
DpnII GATC 8 cut(s) 19, 154, 434, 640, 668, 683, 694, 760
Eam1104I CTCTTC 1 cut(s) 748
EarI CTCTTC 1 cut(s) 748
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 627
Eco88I CYCGRG 2 cut(s) 224, 664
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 181
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 4 cut(s) 324, 728, 734, 797
FatI CATG 4 cut(s) 320, 724, 730, 793
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 501
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 1 cut(s) 5
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 501
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 1 cut(s) 140
HapII CCGG 2 cut(s) 566, 583
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 4 cut(s) 324, 728, 734, 797
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 5 cut(s) 232, 244, 312, 508, 562
HpaI GTTAAC 1 cut(s) 550
HpaII CCGG 2 cut(s) 566, 583
Hpy166II GTNNAC 2 cut(s) 57, 550
Hpy188I TCNGA 4 cut(s) 264, 640, 688, 703
Hpy188III TCNNGA 3 cut(s) 241, 566, 644
Hpy8I GTNNAC 2 cut(s) 57, 550
HpyAV CCTTC 3 cut(s) 412, 775, 779
HpyCH4V TGCA 6 cut(s) 151, 390, 503, 601, 722, 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 534
HpyF3I CTNAG 2 cut(s) 702, 749
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 4 cut(s) 324, 728, 734, 797
HspAI GCGC 1 cut(s) 80
KasI GGCGCC 1 cut(s) 79
Kpn2I TCCGGA 1 cut(s) 565
Ksp22I TGATCA 1 cut(s) 19
KspAI GTTAAC 1 cut(s) 550
Kzo9I GATC 8 cut(s) 19, 154, 434, 640, 668, 683, 694, 760
LmnI GCTCC 3 cut(s) 184, 463, 525
LpnPI CCDG 8 cut(s) 60, 195, 427, 475, 579, 596, 610, 786
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 2 cut(s) 529, 733
MaeI CTAG 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 392
MalI GATC 8 cut(s) 21, 156, 436, 642, 670, 685, 696, 762
MboI GATC 8 cut(s) 19, 154, 434, 640, 668, 683, 694, 760
MboII GAAGA 4 cut(s) 86, 457, 765, 770
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 3 cut(s) 434, 640, 668
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 3 cut(s) 165, 305, 453
Mly113I GGCGCC 1 cut(s) 80
MlyI GAGTC 1 cut(s) 571
MnlI CCTC 8 cut(s) 248, 351, 417, 454, 527, 614, 617, 703
MroI TCCGGA 1 cut(s) 565
MroXI GAANNNNTTC 1 cut(s) 269
MseI TTAA 6 cut(s) 171, 216, 483, 521, 549, 657
MslI CAYNNNNRTG 1 cut(s) 729
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 2 cut(s) 566, 583
MspR9I CCNGG 1 cut(s) 584
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 534
NarI GGCGCC 1 cut(s) 80
NciI CCSGG 1 cut(s) 584
NdeII GATC 8 cut(s) 19, 154, 434, 640, 668, 683, 694, 760
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 4 cut(s) 324, 728, 734, 797
NlaIV GGNNCC 2 cut(s) 81, 180
PctI GAATGC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 4 cut(s) 232, 244, 312, 508
PkrI GCNGC 1 cut(s) 502
Ple19I CGATCG 1 cut(s) 157
PleI GAGTC 1 cut(s) 570
PluTI GGCGCC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 570
PsiI TTATAA 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 81, 180
PspPI GGNCC 2 cut(s) 139, 627
PsuI RGATCY 3 cut(s) 434, 640, 668
PvuI CGATCG 1 cut(s) 157
RsaI GTAC 4 cut(s) 16, 56, 109, 206
RsaNI GTAC 4 cut(s) 15, 55, 108, 205
RseI CAYNNNNRTG 1 cut(s) 729
SaqAI TTAA 6 cut(s) 171, 216, 483, 521, 549, 657
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 8 cut(s) 19, 154, 434, 640, 668, 683, 694, 760
Sau96I GGNCC 2 cut(s) 139, 627
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 1 cut(s) 181
SetI ASST 8 cut(s) 10, 16, 117, 404, 481, 502, 606, 629
SfaNI GCATC 2 cut(s) 529, 733
SfoI GGCGCC 1 cut(s) 81
SinI GGWCC 1 cut(s) 627
SmiMI CAYNNNNRTG 1 cut(s) 729
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 3 cut(s) 165, 305, 453
SspDI GGCGCC 1 cut(s) 79
SspI AATATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 582
StyI CCWWGG 1 cut(s) 364
TaqI TCGA 5 cut(s) 157, 220, 459, 645, 769
TasI AATT 3 cut(s) 165, 305, 453
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 4 cut(s) 232, 244, 312, 508
Tru1I TTAA 6 cut(s) 171, 216, 483, 521, 549, 657
Tru9I TTAA 6 cut(s) 171, 216, 483, 521, 549, 657
TscAI CASTG 1 cut(s) 446
TseI GCWGC 1 cut(s) 500
TspDTI ATGAA 3 cut(s) 236, 309, 579
TspRI CASTG 1 cut(s) 446
Vha464I CTTAAG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 627
XapI RAATTY 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 269
XspI CTAG 1 cut(s) 5
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.