Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009152.1

Orthogroup ID

OG0010571

Physical Location & Seq

Genomic Coordinates Reverse (-)

10952 .. 12026

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009152.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggctcctcctgctgctccgggggagaggaccctaaaagagacaccgacatggaccgtggcggtcgtctgtgcagttttcatactcatatctctaatcatagaacatggaattcatgctcttggaaagtggttccagaaacgcaacaagaaagccatgattgaagctttggagaaaattaaagctgagctaatgctgttgggattcatatccttactactcaccgtgggaactcgatatcttccaaagatatgcgtccccgcaaatattgcagacacgatgcttccctgcggtttaaagtcacaatacgccggcgacagtgataagggagggaagggcgacaatgataaagataaaggaggaggcggtgaccgacggaagttactttcgtatgccgaaaacatgatatggcgtcgagtcttagctcccagtggagattccggttcttgcttatacggtaaagtgccattgatatcaatatctggaatgcaccaattgcatgtattcatcttcgtcctcgctgtttttcatgttctctacagtgtcctcactatggcacttgcgcaggccaaagtaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

193

Amino Acids

20.95

Weight (kDa)

9.39

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25790
malus_domestica	MD06G1006000.v1.1 MD06G1006100.v1.1
prunus_persica	Prupe.3G107600_v2.0.a1 Prupe.5G007700_v2.0.a1
pyrus_communis	pycom06g00550
rosa_chinensis	RchiOBHm_Chr4g0399511 RchiOBHm_Chr4g0399531 RchiOBHm_Chr7g0216251
rosa_laevigata	RLG00000002587
rosa_multiflora	Rmu_sc0000055.1_g000018 Rmu_sc0003545.1_g000009 Rmu_sc0009152.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243550
rosa_rugosa	Rorug07G0159400
rosa_samantha	Rh7AG296600 Rh7BG288800 Rh7BG288900 Rh7CG317000 Rh7DG299300
rosa_wichuraiana	Rw7G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	564
AciI	CCGC	4 cut(s)	62, 261, 291, 366
AcsI	RAATTY	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	4 cut(s)	167, 185, 190, 425
AluI	AGCT	4 cut(s)	167, 185, 190, 425
Alw26I	GTCTC	1 cut(s)	35
AoxI	GGCC	1 cut(s)	567
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	2 cut(s)	30, 54
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	214, 380
AvaII	GGWCC	2 cut(s)	30, 54
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	538
BisI	GCNGC	1 cut(s)	15
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	2 cut(s)	30, 54
BmgT120I	GGNCC	2 cut(s)	30, 54
BmiI	GGNNCC	3 cut(s)	6, 32, 134
BmrFI	CCNGG	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	423
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	20, 57, 225
BsaWI	WCCGGW	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	208
BseDI	CCNNGG	3 cut(s)	20, 57, 225
BseJI	GATNNNNATC	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	375
BsgI	GTGCAG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	569
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	3 cut(s)	20, 312, 441
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	1 cut(s)	569
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	4 cut(s)	62, 261, 291, 366
BspANI	GGCC	1 cut(s)	569
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	6, 32, 134
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	429
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	3 cut(s)	20, 57, 225
BssNI	GRCGYC	1 cut(s)	412
Bst4CI	ACNGT	5 cut(s)	58, 226, 320, 458, 542
BstACI	GRCGYC	1 cut(s)	412
BstAPI	GCANNNNNTGC	2 cut(s)	269, 496
BstC8I	GCNNGC	2 cut(s)	313, 567
BstDEI	CTNAG	2 cut(s)	186, 421
BstDSI	CCRYGG	2 cut(s)	57, 225
BstEII	GGTNACC	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	565
BstMAI	GTCTC	1 cut(s)	35
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 269, 496
BstNSI	RCATGY	1 cut(s)	503
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	569
BtgI	CCRYGG	2 cut(s)	57, 225
BtsIMutI	CAGTG	3 cut(s)	325, 436, 547
Cac8I	GCNNGC	2 cut(s)	313, 567
CfoI	GCGC	1 cut(s)	565
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	30, 54
CseI	GACGC	2 cut(s)	244, 401
CviAII	CATG	7 cut(s)	51, 107, 116, 157, 403, 500, 530
CviJI	RGCY	7 cut(s)	5, 155, 167, 185, 190, 425, 569
CviKI_1	RGCY	7 cut(s)	5, 155, 167, 185, 190, 425, 569
DdeI	CTNAG	2 cut(s)	186, 421
DraI	TTTAAA	1 cut(s)	297
Eco32I	GATATC	2 cut(s)	239, 474
Eco47I	GGWCC	2 cut(s)	30, 54
Eco91I	GGTNACC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	111
EcoRV	GATATC	2 cut(s)	239, 474
FaeI	CATG	7 cut(s)	54, 110, 119, 160, 406, 503, 533
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	7 cut(s)	50, 106, 115, 156, 402, 499, 529
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
FspI	TGCGCA	1 cut(s)	564
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	569
HapII	CCGG	3 cut(s)	20, 312, 441
HgaI	GACGC	2 cut(s)	244, 401
HhaI	GCGC	1 cut(s)	565
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	7 cut(s)	54, 110, 119, 160, 406, 503, 533
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	3 cut(s)	204, 417, 437
HpaII	CCGG	3 cut(s)	20, 312, 441
HphI	GGTGA	2 cut(s)	214, 380
Hpy188III	TCNNGA	2 cut(s)	136, 483
Hpy99I	CGWCG	2 cut(s)	378, 417
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	5 cut(s)	58, 226, 320, 458, 542
HpyCH4V	TGCA	4 cut(s)	74, 272, 490, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 269, 496
HpyF3I	CTNAG	2 cut(s)	186, 421
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	7 cut(s)	54, 110, 119, 160, 406, 503, 533
HspAI	GCGC	1 cut(s)	563
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
LmnI	GCTCC	3 cut(s)	10, 22, 430
LpnPI	CCDG	9 cut(s)	24, 33, 149, 301, 325, 442, 454, 468, 551
LweI	GCATC	1 cut(s)	270
MaeIII	GTNAC	3 cut(s)	300, 368, 381
MboII	GAAGA	2 cut(s)	233, 502
MfeI	CAATTG	1 cut(s)	494
MluCI	AATT	3 cut(s)	111, 177, 494
MlyI	GAGTC	1 cut(s)	426
MnlI	CCTC	7 cut(s)	18, 21, 323, 353, 356, 527, 557
MreI	CGCCGGCG	1 cut(s)	311
MroNI	GCCGGC	1 cut(s)	311
MseI	TTAA	3 cut(s)	180, 296, 580
MslI	CAYNNNNRTG	1 cut(s)	49
MspI	CCGG	3 cut(s)	20, 312, 441
MspR9I	CCNGG	1 cut(s)	21
MunI	CAATTG	1 cut(s)	494
Mva1269I	GAATGC	1 cut(s)	492
MwoI	GCNNNNNNNGC	3 cut(s)	11, 269, 496
NaeI	GCCGGC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	21
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	7 cut(s)	54, 110, 119, 160, 406, 503, 533
NlaIV	GGNNCC	3 cut(s)	6, 32, 134
NmuCI	GTSAC	2 cut(s)	300, 368
NsbI	TGCGCA	1 cut(s)	564
NspI	RCATGY	1 cut(s)	503
PctI	GAATGC	1 cut(s)	492
PdiI	GCCGGC	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	204, 437
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	368
PspN4I	GGNNCC	3 cut(s)	6, 32, 134
PspPI	GGNCC	2 cut(s)	30, 54
PspPPI	RGGWCCY	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	3 cut(s)	180, 296, 580
SatI	GCNGC	1 cut(s)	15
Sau96I	GGNCC	2 cut(s)	30, 54
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	4 cut(s)	169, 187, 192, 427
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	538
SgrAI	CRCCGGYG	1 cut(s)	311
SinI	GGWCC	2 cut(s)	30, 54
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	111, 177, 494
SsiI	CCGC	4 cut(s)	62, 261, 291, 366
SspI	AATATT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	5 cut(s)	58, 226, 320, 458, 542
TaqI	TCGA	2 cut(s)	235, 415
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	3 cut(s)	111, 177, 494
TfiI	GAWTC	2 cut(s)	204, 437
Tru1I	TTAA	3 cut(s)	180, 296, 580
Tru9I	TTAA	3 cut(s)	180, 296, 580
TscAI	CASTG	3 cut(s)	325, 436, 547
TseFI	GTSAC	2 cut(s)	300, 368
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	300, 368
TspDTI	ATGAA	5 cut(s)	70, 104, 196, 496, 518
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	3 cut(s)	325, 436, 547
VpaK11BI	GGWCC	2 cut(s)	30, 54
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.