Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010571

Physical Location & Seq

Genomic Coordinates Forward (+)

32480717 .. 32485812

Gene Structure 5096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG296600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTCCTCCTGCTGCTCCGGGGGAGAGGACCCTAAAAGAGACACCGACATGGACCGTGGCGGTCGTCTGTGCAGTTTTCATACTCATATCTCTAATCATAGAACATGGAATTCATGCTCTAGGAAAGTGGTTCCAGAAACGCAACAAGAAAGCCATGATTGAAGCTTTGGAGAAAATTAAAGCTGAGCTAATGCTGTTGGGATTCATATCCTTACTACTCACCGTGGGAACTCGATATCTTCCAAAGATATGCGTCCCCGCAAATATTGCAGACACGATGCTTCCCTGCGGTTTAAAGTCACAATACGCCGGCGACAGTGATAAGGGAGGGAAGGGCGACGATGATAAAGATAAAGGAGGAGGCGGTGACCGACGGAAGTTACTTTCGTATGCCGAAAACATGATATGGCGTCGAGTCTTAGCTCCCAGTGGAGATTCCAGTTCTTGCTCATACATGAAGAAATGGAAGGCCTGGGAATCTGAGACAACGTCCTTGGAATACCAATTTACAAATGATCCTGCAAGGTTTAGGTTTACTCGTCAAACTTCATTTGTGAGGCGACACTCTGGCTTTTCTACAACACCTGGAATTAGATGGATCGTGGCATTCTTTAGGCAATTCTTCGGTTCGGTGACAAGGGTGGACTATCTGACCATGCGCCATGGATTTATAAATGCACATTTTGCTCCAAATAGCAAATTTGATTTCCATAAGTACATCAAGAGATCTATGGAAGATGATTTTAAGGTGGTTGTGGGTATTAGTGTACCACTATGGATTTTCGCAGTGGTCTTCTTGCTTCTAAACGTTTACAAATGGTACACGCTTACTTGGTTGTCATTGGCGCCACTCATTATTCTTCTGTTGGTGGGTACAAAGCTTGAACTTATCATAATGGAGATGGCCCAAGAAATGCACGATCGAAATACAATTGTTAAAGGGGCTCCAGTAGTAGAGCCAAGCAATAAGTACTTTTGGTTTAATCGACCCGAGTGGATTCTCCTCTTGATTCATTTCACATTATTTCAGAACGCTTTCCAAATGGCGTATTTCTTGTGGGTATCTGTAAGTAATTTTCATAAACATTCATACACATTTATGCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

370

Amino Acids

42.59

Weight (kDa)

9.49

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	9 - 151	1.1e-45	Mlo family
Mlo	PF03094	152 - 360	6.1e-105	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25790
malus_domestica	MD06G1006000.v1.1 MD06G1006100.v1.1
prunus_persica	Prupe.3G107600_v2.0.a1 Prupe.5G007700_v2.0.a1
pyrus_communis	pycom06g00550
rosa_chinensis	RchiOBHm_Chr4g0399511 RchiOBHm_Chr4g0399531 RchiOBHm_Chr7g0216251
rosa_laevigata	RLG00000002587
rosa_multiflora	Rmu_sc0000055.1_g000018 Rmu_sc0003545.1_g000009 Rmu_sc0009152.1_g000002
rosa_roxburghii	Rroxscaffold_3G00243550
rosa_rugosa	Rorug07G0159400
rosa_samantha	Rh7AG296600 Rh7BG288800 Rh7BG288900 Rh7CG317000 Rh7DG299300
rosa_wichuraiana	Rw7G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	847
AciI	CCGC	4 cut(s)	62, 261, 291, 366
AclI	AACGTT	1 cut(s)	810
AclWI	GGATC	2 cut(s)	512, 608
AcsI	RAATTY	2 cut(s)	111, 701
AcyI	GRCGYC	2 cut(s)	412, 848
AfaI	GTAC	5 cut(s)	719, 771, 824, 877, 974
AgsI	TTSAA	2 cut(s)	164, 887
AjnI	CCWGG	2 cut(s)	473, 586
AluBI	AGCT	5 cut(s)	167, 185, 190, 425, 883
AluI	AGCT	5 cut(s)	167, 185, 190, 425, 883
Alw26I	GTCTC	2 cut(s)	35, 479
AlwI	GGATC	2 cut(s)	512, 608
Ama87I	CYCGRG	1 cut(s)	992
AoxI	GGCC	2 cut(s)	471, 906
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	2 cut(s)	111, 701
Asp700I	GAANNNNTTC	1 cut(s)	1037
AspLEI	GCGC	2 cut(s)	663, 850
AspS9I	GGNCC	3 cut(s)	30, 54, 907
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	3 cut(s)	214, 380, 646
AvaI	CYCGRG	1 cut(s)	992
AvaII	GGWCC	2 cut(s)	30, 54
BanI	GGYRCC	1 cut(s)	847
BanII	GRGCYC	1 cut(s)	949
BbsI	GAAGAC	1 cut(s)	787
BccI	CCATC	2 cut(s)	591, 898
BciT130I	CCWGG	2 cut(s)	475, 588
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	35, 479
BfaI	CTAG	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	851
BglII	AGATCT	1 cut(s)	728
BisI	GCNGC	1 cut(s)	15
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	974
Bme1390I	CCNGG	3 cut(s)	21, 475, 588
Bme18I	GGWCC	2 cut(s)	30, 54
BmeT110I	CYCGRG	1 cut(s)	992
BmgT120I	GGNCC	3 cut(s)	30, 54, 907
BmiI	GGNNCC	5 cut(s)	6, 32, 134, 849, 948
BmrFI	CCNGG	3 cut(s)	21, 475, 588
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	933
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	208
BsaHI	GRCGYC	2 cut(s)	412, 848
BsaJI	CCNNGG	6 cut(s)	20, 57, 225, 474, 495, 664
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	3 cut(s)	429, 441, 950
Bse8I	GATNNNNATC	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	475, 588
BseDI	CCNNGG	6 cut(s)	20, 57, 225, 474, 495, 664
BseJI	GATNNNNATC	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	177, 474
BseNI	ACTGG	3 cut(s)	429, 441, 950
BseRI	GAGGAG	2 cut(s)	375, 995
BsgI	GTGCAG	1 cut(s)	93
Bsh1285I	CGRYCG	2 cut(s)	66, 925
BshFI	GGCC	2 cut(s)	473, 908
BshNI	GGYRCC	1 cut(s)	847
BsiEI	CGRYCG	2 cut(s)	66, 925
BsiHKCI	CYCGRG	1 cut(s)	992
BsiSI	CCGG	2 cut(s)	20, 312
BslFI	GGGAC	1 cut(s)	242
BsmAI	GTCTC	2 cut(s)	35, 479
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	473, 908
BsoBI	CYCGRG	1 cut(s)	992
Bsp1286I	GDGCHC	1 cut(s)	949
Bsp143I	GATC	4 cut(s)	517, 600, 728, 922
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	4 cut(s)	62, 261, 291, 366
BspANI	GGCC	2 cut(s)	473, 908
BspCNI	CTCAG	2 cut(s)	178, 475
BspLI	GGNNCC	5 cut(s)	6, 32, 134, 849, 948
BspPI	GGATC	2 cut(s)	512, 608
BspT107I	GGYRCC	1 cut(s)	847
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	3 cut(s)	429, 441, 950
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	6 cut(s)	20, 57, 225, 474, 495, 664
BssMI	GATC	4 cut(s)	517, 600, 728, 922
BssNI	GRCGYC	2 cut(s)	412, 848
BssT1I	CCWWGG	2 cut(s)	495, 664
Bst2UI	CCWGG	2 cut(s)	475, 588
Bst4CI	ACNGT	3 cut(s)	58, 226, 320
BstACI	GRCGYC	2 cut(s)	412, 848
BstAPI	GCANNNNNTGC	2 cut(s)	269, 686
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	3 cut(s)	186, 421, 483
BstDSI	CCRYGG	3 cut(s)	57, 225, 664
BstEII	GGTNACC	1 cut(s)	368
BstH2I	RGCGCY	1 cut(s)	851
BstHHI	GCGC	2 cut(s)	663, 850
BstKTI	GATC	4 cut(s)	520, 603, 731, 925
BstMAI	GTCTC	2 cut(s)	35, 479
BstMBI	GATC	4 cut(s)	517, 600, 728, 922
BstMCI	CGRYCG	2 cut(s)	66, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 269, 686
BstNI	CCWGG	2 cut(s)	475, 588
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	19, 473, 586
BstV2I	GAAGAC	1 cut(s)	787
BstX2I	RGATCY	1 cut(s)	728
BstYI	RGATCY	1 cut(s)	728
BsuRI	GGCC	2 cut(s)	473, 908
BtgI	CCRYGG	3 cut(s)	57, 225, 664
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	3 cut(s)	325, 436, 795
Cac8I	GCNNGC	1 cut(s)	313
CfoI	GCGC	2 cut(s)	663, 850
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	30, 54, 907
CseI	GACGC	2 cut(s)	244, 401
Csp6I	GTAC	5 cut(s)	718, 770, 823, 876, 973
CviAII	CATG	9 cut(s)	51, 107, 116, 157, 403, 457, 658, 665, 1106
CviQI	GTAC	5 cut(s)	718, 770, 823, 876, 973
DdeI	CTNAG	3 cut(s)	186, 421, 483
DinI	GGCGCC	1 cut(s)	849
DpnI	GATC	4 cut(s)	519, 602, 730, 924
DpnII	GATC	4 cut(s)	517, 600, 728, 922
DraI	TTTAAA	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	495, 664
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	949
Eco32I	GATATC	1 cut(s)	239
Eco47I	GGWCC	2 cut(s)	30, 54
Eco88I	CYCGRG	1 cut(s)	992
Eco91I	GGTNACC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	473, 586
EcoRV	GATATC	1 cut(s)	239
EcoT14I	CCWWGG	2 cut(s)	495, 664
EcoT22I	ATGCAT	1 cut(s)	1107
EcoT38I	GRGCYC	1 cut(s)	949
EgeI	GGCGCC	1 cut(s)	849
EheI	GGCGCC	1 cut(s)	849
ErhI	CCWWGG	2 cut(s)	495, 664
FaeI	CATG	9 cut(s)	54, 110, 119, 160, 406, 460, 661, 668, 1109
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	9 cut(s)	50, 106, 115, 156, 402, 456, 657, 664, 1105
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	15
FriOI	GRGCYC	1 cut(s)	949
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	2 cut(s)	662, 849
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	933
HaeII	RGCGCY	1 cut(s)	851
HaeIII	GGCC	2 cut(s)	473, 908
HapII	CCGG	2 cut(s)	20, 312
HgaI	GACGC	2 cut(s)	244, 401
HhaI	GCGC	2 cut(s)	663, 850
Hin1I	GRCGYC	2 cut(s)	412, 848
Hin1II	CATG	9 cut(s)	54, 110, 119, 160, 406, 460, 661, 668, 1109
Hin6I	GCGC	2 cut(s)	661, 848
HinP1I	GCGC	2 cut(s)	661, 848
HindIII	AAGCTT	2 cut(s)	165, 881
HinfI	GANTC	6 cut(s)	204, 417, 437, 479, 1000, 1012
HpaII	CCGG	2 cut(s)	20, 312
HphI	GGTGA	3 cut(s)	214, 380, 646
Hpy166II	GTNNAC	5 cut(s)	537, 646, 770, 814, 825
Hpy188I	TCNGA	3 cut(s)	484, 654, 1032
Hpy188III	TCNNGA	3 cut(s)	136, 724, 1009
Hpy8I	GTNNAC	5 cut(s)	537, 646, 770, 814, 825
Hpy99I	CGWCG	3 cut(s)	344, 378, 417
HpyAV	CCTTC	2 cut(s)	328, 463
HpyCH4III	ACNGT	3 cut(s)	58, 226, 320
HpyCH4IV	ACGT	2 cut(s)	491, 810
HpyCH4V	TGCA	6 cut(s)	74, 272, 524, 680, 919, 1105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 269, 686
HpyF3I	CTNAG	3 cut(s)	186, 421, 483
HpySE526I	ACGT	2 cut(s)	491, 810
Hsp92I	GRCGYC	2 cut(s)	412, 848
Hsp92II	CATG	9 cut(s)	54, 110, 119, 160, 406, 460, 661, 668, 1109
HspAI	GCGC	2 cut(s)	661, 848
KasI	GGCGCC	1 cut(s)	847
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	517, 600, 728, 922
LmnI	GCTCC	5 cut(s)	10, 22, 430, 694, 952
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	2 cut(s)	491, 810
MaeIII	GTNAC	4 cut(s)	300, 368, 381, 634
MalI	GATC	4 cut(s)	519, 602, 730, 924
MboI	GATC	4 cut(s)	517, 600, 728, 922
MboII	GAAGA	6 cut(s)	233, 472, 616, 749, 787, 854
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	1 cut(s)	728
MhlI	GDGCHC	1 cut(s)	949
MluCI	AATT	8 cut(s)	111, 177, 506, 591, 620, 701, 933, 1075
Mly113I	GGCGCC	1 cut(s)	848
MlyI	GAGTC	1 cut(s)	426
MnlI	CCTC	7 cut(s)	18, 21, 323, 353, 356, 552, 1016
Mph1103I	ATGCAT	1 cut(s)	1107
MreI	CGCCGGCG	1 cut(s)	311
MroNI	GCCGGC	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	1037
MseI	TTAA	5 cut(s)	180, 296, 747, 939, 984
MslI	CAYNNNNRTG	2 cut(s)	49, 1100
MspI	CCGG	2 cut(s)	20, 312
MspR9I	CCNGG	3 cut(s)	21, 475, 588
MunI	CAATTG	1 cut(s)	933
Mva1269I	GAATGC	1 cut(s)	608
MvaI	CCWGG	2 cut(s)	475, 588
MwoI	GCNNNNNNNGC	3 cut(s)	11, 269, 686
NaeI	GCCGGC	1 cut(s)	313
NarI	GGCGCC	1 cut(s)	848
NciI	CCSGG	1 cut(s)	21
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	4 cut(s)	517, 600, 728, 922
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	9 cut(s)	54, 110, 119, 160, 406, 460, 661, 668, 1109
NlaIV	GGNNCC	5 cut(s)	6, 32, 134, 849, 948
NmuCI	GTSAC	3 cut(s)	300, 368, 634
NsiI	ATGCAT	1 cut(s)	1107
PceI	AGGCCT	1 cut(s)	473
PctI	GAATGC	1 cut(s)	608
PdiI	GCCGGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	1037
PfeI	GAWTC	5 cut(s)	204, 437, 479, 1000, 1012
PflFI	GACNNNGTC	1 cut(s)	490
PkrI	GCNGC	1 cut(s)	16
Ple19I	CGATCG	1 cut(s)	925
PleI	GAGTC	1 cut(s)	425
PluTI	GGCGCC	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	674
Psp1406I	AACGTT	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	473, 586
PspEI	GGTNACC	1 cut(s)	368
PspGI	CCWGG	2 cut(s)	473, 586
PspN4I	GGNNCC	5 cut(s)	6, 32, 134, 849, 948
PspPI	GGNCC	3 cut(s)	30, 54, 907
PspPPI	RGGWCCY	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	728
PsyI	GACNNNGTC	1 cut(s)	490
PvuI	CGATCG	1 cut(s)	925
RsaI	GTAC	5 cut(s)	719, 771, 824, 877, 974
RsaNI	GTAC	5 cut(s)	718, 770, 823, 876, 973
RseI	CAYNNNNRTG	2 cut(s)	49, 1100
SaqAI	TTAA	5 cut(s)	180, 296, 747, 939, 984
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	4 cut(s)	517, 600, 728, 922
Sau96I	GGNCC	3 cut(s)	30, 54, 907
ScaI	AGTACT	1 cut(s)	974
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	3 cut(s)	21, 475, 588
SduI	GDGCHC	1 cut(s)	949
SfaNI	GCATC	1 cut(s)	270
SfoI	GGCGCC	1 cut(s)	849
SgrAI	CRCCGGYG	1 cut(s)	311
SinI	GGWCC	2 cut(s)	30, 54
SmiMI	CAYNNNNRTG	2 cut(s)	49, 1100
Sse9I	AATT	8 cut(s)	111, 177, 506, 591, 620, 701, 933, 1075
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	4 cut(s)	62, 261, 291, 366
SspDI	GGCGCC	1 cut(s)	847
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	19, 473, 586
StyI	CCWWGG	2 cut(s)	495, 664
TaaI	ACNGT	3 cut(s)	58, 226, 320
TaiI	ACGT	2 cut(s)	494, 813
TaqI	TCGA	4 cut(s)	235, 415, 925, 988
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	8 cut(s)	111, 177, 506, 591, 620, 701, 933, 1075
TatI	WGTACW	2 cut(s)	717, 972
TfiI	GAWTC	5 cut(s)	204, 437, 479, 1000, 1012
Tru1I	TTAA	5 cut(s)	180, 296, 747, 939, 984
Tru9I	TTAA	5 cut(s)	180, 296, 747, 939, 984
TscAI	CASTG	3 cut(s)	325, 436, 795
TseFI	GTSAC	3 cut(s)	300, 368, 634
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	3 cut(s)	300, 368, 634
TspDTI	ATGAA	8 cut(s)	70, 104, 196, 473, 540, 1004, 1070, 1080
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	3 cut(s)	325, 436, 795
Tth111I	GACNNNGTC	1 cut(s)	490
VpaK11BI	GGWCC	2 cut(s)	30, 54
XapI	RAATTY	2 cut(s)	111, 701
XmnI	GAANNNNTTC	1 cut(s)	1037
XspI	CTAG	1 cut(s)	122
ZrmI	AGTACT	1 cut(s)	974
Zsp2I	ATGCAT	1 cut(s)	1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.