FvH4_5g34290

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012629
Physical Location & Seq
Forward (+)
24955115 .. 24970300
15186 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34290.t1

Sequence Viewer

Length: 11049 bp
ATGACTACTGTAAGATCAAGCTTGCCGTCCCGGATTCGGCAGCTTCTGTCCGCCGACGGCGCTCTCGGCCCGTCTATCAAACTCGACTCCGAGCCGTCTCCTAAAATCAAAGCCTTTATCAATAAGGTGATACTGTGTCCATTACAAGATATAGCTATTCCTCTTTCCGGTTTCCGCTGGGAGTACAGTAAGGGTAATTTCAACCATTGGAGGCCACTTTTTCTGCATTTTGATACATATTTCAAGACATACTTGTCTGGTAGAAATGACCTACTCTTGTCCGATAAAATCTTAGAAGATGATACCCCCTTCCCGAAACAAGCAGTACTACAAATTTTGAGAGTGATGCAAATAATTTTAGAGAATTGCCATAACAAGAGTTCTTTTGATGGTTTAGAGCATTTCAAGCTGCTACTTGCATCAACAGATCCAGAGGTTCTTATAGCAACACTCGAAACACTTTCTGCGCTTGTGAAAATATATCCCTCGAAGATGCATGTCAGTGGGAAGATGATTGGCTGTGGTTCTGTAAACAGCTATCTCCTGTCTCTTGCACAGGGCTGGGGAAGCAAAGAAGAAGGGTTGGGATTATATTCATGTGTCATGGCGAACGAGACTACTCAAGATGACGGGCTGAATTTGTTCCCATCTGATGTAGAAAATGATTCTGACAAATCTCAGCACCGAATAGGTTCTACCCTTTATTTTGAATTGCATGGGAATGCCCAAAGTACAGAGGAGAGCAGTAGCAATGTAAATAGTACTTCCAATTTGGGGGTTATAAACATGCCAGATCTGCATATGCGGAAGGAGGATGATTTAAAGCTGATGAAACAGTGTATAGAGGACTACAGGGTGCCTCCTGAGATTCGGTTCTCACTCCTGACAAGAATCAGATATGCTCGTGCATTCCGTTCACCAAGAATCTGCAGGTTGTACAGCAGGATTTGCCTTCTTGCATTTATTGTGCTTGTTCAATCTAGTGATGCGCATGAAGAACTTGTATCCTTCTTTGCTAATGAGCCAGAGTATACCAATGAACTGATTAGAATTGTGCGGTCAGAAGAATCAGTTTCTGGAACCATCAGAACACATGCAATGCTTGCCTTGGGAGCACAATTAGCTGCATATTCTGCATCTCATGAGCGGGCACGAATTTTGAGTGGATCTAGTATCAGTTTCGCAGGAGGGAATCGTATGATACTTCTGAATGTACTCCAGAGAGCTGTTTTATCACTTAAAACCTCCAATGATCCAACTTCTCTGGCTTTTGTTGAAGCTCTTCTTCAGTTCTATTTGCTCCATGTGGTTTCATCGTCCACTACTGGGAGTAACATTAGAGGGTCAGGCATGGTTCCAACATTTTTGCCTCTTTTGGAGGATTCTGATCCCTCGCACTTGCATCTAGTCTGTTTTGCTGTGAAAACTCTGCAAAAGCTCATGGATTACAGTAGTTCAGCTGTGTCTCTCTTCAAAGAGTTAGGGGGAGTTGAACTGTTGGCTCAGAGACTACAGATAGAGGTACATAGGGTGATAGGTTTGGCTGGTGATAATGATAATTCAATGGTCATTGGTGAGAGCTCTAGGAGTGAAGATCAGTTGTACTCCCAGAAGAGGCTCATTAAAGCTTCGTTGAAGGCACTTGGGTCCGCTTCATATGCTGCTGGCAATTCTACCAGATCTCAGCATCCTCATGACAGTTCGTTGCCTGAAACTCTTTCTCTGATCTTCGGGAATGTTGAGAAGTTCGGAGGTGAGATTTATCACTCTGCTGTGACTGTTCTGAGTGAAACGATACACAAAGACCCAACTTGTTATTCTGCTTTGCATGATATGGGTCTTCCAGATGCTTTCATATCTTCAGTTATAGCTGGGGTTCTTCCATCCGCAAAGGCACTCCAGTGTGTGCCTAATGGTCTCGGTGCTATTTGTCTCAACGCCAAAGGCTTGGAGGCTGTGAAGGAAAAGGCAGCCTTACGGTTTCTTGTTGACATCTTCACCAGCAAGAAGTATGTGGTAGCAATGAATGGAGCTATTGTCCATTTGACAAATGCTGTGGAAGAGCTTTTGCGCCATGTGTCTTCCCTAAGAAGTATTGGTGTTGATATAATGATTGAAATTGTTGAAAAAATTACTTCCTTCACCGATAACAACAATACAGGGCTAGCAGGAAAGGCTAGTGGGAGTGGGAGTGCTGCTATGGAAATGGATTCTGAAGACAAGGAACAGCCTCTAGTGGGTGCAGTAGATTCAGCTGCAGTAGATTTGGCTGCAGATGGTATCAGTAATGACCAGTTCATTCAATTATCCATTTTCCATTTGATGGTACTGGTCCACAGAACAATGGAGAACGCTGAAATATGTCGGTTATTTGTTGAAAAGTCTGGAATTGATGCTTTACTGAAGCTTTTGTTACAGCCGACTGTTGTACAATCATCTGATGGAATGTCTATTGCTCTACATAGCACCATGGTTTTCAAAGATTTCACTCAAAATCACTCTGCTGCACTTGCCCGTGCATTTTGCTCTTCCCTTAGGGGCCACCTAAAGAAAGCCTTGTCGGAGTTTGGTGCAGTTTCAGGGACTCTCTTACTGGAACCTAAGATGACTTCAGATGGTGGGGTCTTTCCTTCACTGTTTCTTGTTGAGTTCCTTTTGTTTATTGCTGCCTCGAAGGAAAACCGCTGGGTAACTGCACTGCTTACAGAACTTGGAAATGACAGCAAGGATGTTCTGGAAGATATTGGGCGTGTCCATCGGGAAGTTCTATGGCAGATTGCTCTTCTAGAAGATACCAAGTCTGAAATGGAGGATGAAACTGCTGGTTCTACCACCGAGTCTCAACAGTCAGAAATGAATGCAAGTGATTCTGAGGAGCAAAGGTTCAACTCTTTTAGGCAGTTCCTTGATCCATTGATGAGAAGAAGGCAGTCTGGATGGAGCATTGAATCACAATTTCTTGATCTTATCAACCTGTATCGCGATCTTGGTCGCGCCACCAGTTCTCAAAGAACAAATTCTGATGGTCCTTCAAATCTGCGGATTGGATCTAGTCATCATTCTGGTTCTTCAGATGCTGGTAGAAGAGAGTATGACCAGCAGAGCTCCTATTATACTTCTTGCTGTGACATGGTAAGATCGCTTTCTTTTCACACTAGTCATTTGTTTCAAGAGCTGGGAAAGGTCATGTACCAACCTTCTCGTCGACGGGATGATATTGTAACGGTTTCCGCTGCTGCAAAATCGGTGGCTTCTACATTTGCATCTATTGCATTTGATCACATGGGTTTTGAAGGGCATGCAAGATCTTCTGAATCTGAGGTGTCTGTATCAGCAAAATGTCGTTACTTTGGTAAAGTTATTGATTTCATTGATGTCAGTCTACTGGAGAGACCAGATTCATGTAATTCTGTTTTCCTCAATTGCTTGTATGGACATGGAGTCATTCAGTCAGTTTTGACAACATTTGAAGCTACCAGTCAATTGCTCCTCACAGTAAATAGGGCTCCTGCATCTCCAATGGAAACGGATGATGGGAACTCAAAGCAGGATGAAAGGGAAGATAGTGACCATTCATGGATTTATGGTCCGTTAGCTAGCTACGGCAAACTTATGGACCACCTGGTAACATCGTCTTTTATATTATCTCCTTTTACAAAGCAGTTGCTTGCACAGCCCCTTGCAAATGGAACAATTCCTTTTCCGCGTGATGCTGAGACTTTCGTAAAGGTCCTCCAATCCATGGTGCTGAAGGTAGTGCTTCCTGTCTGGACTCATCCCCAATTTGTCGACTGTAGTTATGATTTTATAACTACAGTTATTTCAATAATCAGGCACATATACTCTGGGGTTGAAGTTAAGAATGTCAATAGTAGTTCCAGTGCCCGTATTGCTGGTCCCCCTCCTAATGAGACGACTATATCAACTATTGTAGATATGGGCTTCTCCAGATCTAGAGCTGAAGAAGCTTTGAGACAGGTTGGATCCAATAGTGTGGAGTTAGCTATGGAGTGGTTGTTCTCACATCCAGAGGAAGTTCAAGAAGATGATGATTTTGCTCGTGCACTTGCCATGTCTTTGGATAATTCAGAGTCTGACACTAAGGAAGCTGGTGCAATGGAAAATGCACCAGAAGAAGAAAAGGTTCAGCTTCCTCCTGTTGAGGAGTTGTTGTCCACATGCACAAAGCTTCTGCAGATGAAGGAACCTCTCGCTTTTCCAGTGCGAGACCTGCTTGTAATGATATGCTCCCAAAATGACGGTCAATGTAGGCCTAATATCATATCATTTATTGTTGATCGTGTCAAAGAAACAAGTTTGAATTCTGACGGTGGAAACGGTACCTTGCTATCTGCTCTTTTTCATGTACTTGCTTTAATTCTCCACGAAGATGCAGTTGCAAGAGAAATAGCCTCAAAGAATGGATTTGTGAAAATAGCTTCAGATCTACTTTCCCAATGGGATTCTGGTTCGACTGGCATAGCAAAACGAGAGGTGCCCAAGTGGGTAACAACAGCTTTTCTTGCTATAGATCGGCTGTTGCAGGTGGATCAAAAATTGAATTCTGAAATTGCCGAGCAGTTGAAGAGAGATGCTGTTAGTAGCCAGCAAACATCTATTACCATTGATGAGGACAAGCAAAACAAGTTGCAGTCTGCATTGGGATTATCTTCAAAGCACATAGAAATTAAGGAGCAGAAGAGGCTTATTGAGATCGCTTGTTCCTGTATCAGGAATCAGCTTCCTTCTGAAACAATGCATGCAGTTTTACAGCTGTGCTCTACCCTCACTAAAACACATACAGTTGCTGTTAGTTTTCTTGATGCTGGGGGTTTAAGCTTGCTACTTTCATTGCCAACAAGTAGTCTATTTTCCGGTTTTGATAATATTGCTGCTACTATTATCCGCCATGTTCTTGAGGATCCTCAAACCCTTCAGCAGGCAATGGAATTTGAAATAAGGCACACCCTTGTGGCTGCTGCCAACAGACATTCAAATGGAAGGGTTTCTCCCCGCAATTTTCTAGCAAGTCTAAGTTCTGCCATTTCCAGGGATCCAGTCATATTCATGCGTGCTGCTCAGTCTATTTGTCAAGTGGAGATGGTTGGTGAGAGGCCCTGCATTGTTTTGCTGAAGGATCGTGACAAAGATAAATCCAAAGAAAAAGAAAAAGAGAAGGATAAGTCATTGGAGAAGGAGAAAACACAGATTGCGGATGGGAAAACTGCTCTGGGTAATACAAATCCAGTACCTTCTGGGAATGCACAAGGCAAGGGCCATGATTCAAACTCAAAGAGTGGTAAAGTTCATCGAAAATATCCCCAGAGTTTCGTGAGTGTGATTGAGCTACTTCTGGATTCTGTCTGTACTTACGTACCTCCTCCAAAAGATAATCTTGTCGTTGATGTGCTGCATAATACCCCATCGTCAACTGACATGGACATTGATGTTGCCGCTGTCAAAGGAAAAGGAAAAGCTGTTGCCTCATCTTCTGAGGATGGTGGAGCTTGTACCCAAGAAGCTTCTGCATCACTTGCAAAGGTTGTATTCATTTTGAAGCTTCTGACAGAGATTCTTGCAATGTATGCTTCATCTGCTCATGTTCTACTTCGGAAAGATGCTGAACTTAGTAGTTGCAGGACTCCTAATCAAAAGGGTTCTACTGCTGTATGCACTGGTGGAATATTTCACCATGTTCTTCACAAATTTATTCCATATTCACGGAGTGCCAAGAAGGATAAGAAAACAGATGGTGATTGGAAGCACAAGTTAGCAAGCAGGGCAAGCCAGTTTTTGGTTGCATCATGTGTTCGTTCTTCCGAGGCAAGGAAAAGGATTTTCGCGGAGATCAGTTTTATTTTCAATGACTTTGTGGACTCGTGTAGTGGCTTTCGACCACCTGAAAATGACATACAAGCTTTCGCTGATCTTCTTAATGATGTTCTGGCTGCTCGCACTCCTACTGGTTCATACATCTCTGCAGAAGCGTCTGCCACTTTTATAGATGTTGGTCTGGTCGGATCATTGACTCGAACTCTTGAAGTGCTGGACCTGGACCATGCTGACTCACCTAAAGTTGTTACAGGTCTGATCAAAGCTCTGGAACTGGTAACCAAGGAACACGTCCATTTGGCTGATTCGAATGCTGGTAAGGGCGACAGTTCTACAAAACCTCCTGATCAATCTGGCAGGACAGATAATGTTGATGGTGGATCACAGTCCATGGAGACACCATCCCAATCCCATCACAATTCTGCTCCAGCTGAGCACACTGGGTCTTTTATTAATGTCCAATCTTATGGTGGTTCTGAGGCTGTCACAGATGATATGGAACATGACCAAGATCTTGAAGGAGGTTTTGCTGCTGCTAACGAAGATGAGTATATGCATGAAATTTCAGAGGACACTAGGGGTCTGGAGAACGGTATTGATACCATGGGTATACGGTTTGAAATTCAGCCTCATGAGCAAGAAAATCTTGAGGATGACGATGAGGATGATGAAGATATGTCTGAGGATGATGGAGATGAAGTGGATGACGATGAAGATGAAGATGATGAGGAGCATAATGATCTGGAAGATGAAGTCCATCACTTGCCACATCCTGACACTGATCAAGATGATCATGAAATTGATGATGAGGAGTTTGATGAAGAAGTATTGGAGGAAGATGATGAGGATGAGGAAGATGAGGAGGATGGAGTTATACTTAGGCTGGAGGAAGGCATAAATGGGATTAATGTTTTTGACCATATTGAGGTTTTTGGAAGAGAACATGGTTTCCCTAACGAAGCACTTCATGTGATGCCAGTGGAAGTTTTTGGGTCTAGACGTCAAGGGCGCACTACTTCTATTTACAGTCTTTTGGGCAGAACAGGTGAGAATGCGGCTCCATCAAGACATCCTCTTTTGGTTGGACCTTTGTCTATGCATTCAGCTCCTCCTAGGCAATCAGAAAATGCTCGTGATGGGGTCATACCAGATAGGAACACAGAGATCACCTCATCAAGATTGGACAGTATTTTCCGATCACTGAGGAATGGACGCCATGGACACCGTCTGAATTTGTGGATGGATGATAACCAGCAAGGTGGTGGATCAAATGCTGGTATAGTACCCCAAGGACTTGAGGAGTTGCTTGTTTCCCAATTGAGGCGACCGACACCTGAAAAAACATCTGAAGAGAATACAACACCGGTAGTTTCTCAGAACAGAGAAGAAGTAGCTGAGTTACAAGATTCACATGCAGCTGTAAGGCCTGAAATGCCTGTTGAAAACGATATAAATAATGAAAGTGCTAATGTTCCCCCTCCTGATACAATGGTTAACTCTGGCAATGCTGATTTGGCACCACCAACAGCAAGTGAATCTCTACAAGCAATGGACATGTCTAGTACACATCCGCAGTCTGTTGATATGCAGTTTGAACACACTGATGCAGCGGTGCGGGATGTAGAAGCTGTGAGTCAAGAGAGTGGTGGAAGTGGAGCAACTTTAGGGGAGAGCCTCCGGAGCCTTGATGTTGAAATTGGGAGTGCTGATGGTCACGATGATGGTGCAGATAGGCAAGGCTCCTCAGATAGAATGCCACTTGGTGATTCTCAGACGAGTCGAGTGAGGAGAACAAACATATCTTTAGGAAATTCTGCATCTGTAAGTGCAAGAGATGTTTCACTTCATAGTGTAACTGAGGTGTCAGAAAATTCTAGCCGTGAAGCAGATCAGGATGGCCCAGCAGCAGAACGGCAACTCAGTAGTGATGCTGGTTCTGGGGCAATTGATCCTGCTTTCTTGGATGCTCTTCCTGAGGAGTTGCGAGCTGAAGTCCTTTCTGCACAACAGGGTCAAGTTGCTCCGCAGTCAGCCTCTGAGCCACAAAATGCTGGTGATATTGATCCAGAATTTCTTGCTGCCCTTCCTCCGGATATCAGGGCTGAAGTTTTAGCTCAACAGCAAGCCCAAAGGGTACATCAGTCCCAGGAACTGGAAGGTCAACCAGTTGAAATGGACACTGTTTCAATAATTGCAACTTTTCCCTCAGAATTGCGAGAAGAGGTTCTGTTAACTTCATCTGATGCTATACTTGCCAATCTTACACCGGCTCTAGTTGCGGAGGCAAACATGCTGCGTGAAAGATTTGCCAATCGTTATAATCGTACCCTATTTGGTATGTATCCTAGAAACCGCAGGGGTGAGACGTCAAGATCTGGCATTGGATCCAGCCTGGATAGAATCGGTGGAGGCCTTGCCTCACGTAGGCCTATTGGTGCTAAGGTAGTTGAAGCTGAAGGAGCTCCTTTAGTCAATGCAGAAGCTCTACATGCAATAGTTCGAGTGCTTCGTGTGTTTCAGCCTCTGTATAAAGGTCAGCTGCAGAAGCTTCTGTTGAATTTGTGTGCTCATGCTGAAAGCAGAAATTCTGTTGTGAGAATTCTGATGGGCATACTAATGCTCGATACAAGAAAGCCTGGGAATCACTCTACTGATATTGAAACGTCATATCGGCTCTATGGTTGTCCAGGAAATGTGATGTATTCACGCGCCACAGCTAAAGATGGAGTTCCACCATTGTTATCTCGCCGCATTCTGGAAACTCTGACATATTTGGCTCGCCATCATCCGAACGTGGCAAAGATTTTGCTTCATTTAAGGTTGCCTCATTCTGGTCCTCAAGAAAGAGAGAATAGTGACAGGGCTCGTGGAAAAGCTGTGATGGTTGTGGAGGAGAACGGTCAGAATAATAGTCATAATCAGGAAGGATATCTGTCCATAGCCTTGCTTTTGAGCCTCTTGAATCAACCACTTTATTTGATGAGAAGTATAGCTCATCTGGAACAGCTACTTAACTTACTGGATGTCATCATTGATAATGCTGAAAGCAAGTTACCGGAAAAATCTGGGGTTTCTATTTCTGAACAACCATCTGCTCCACAAGTTTCGACTTCTGACGCTGAGATGAATACAGAGTCTGGTAGCACATCTGTTGATCTTGGAACACAAAGTAAGGTTGTTGATTCCTCCCAACCCTCCACTTCTGGTGCAGATGACGAATGCCATACTGAAAGTGTTCTGCTGAACCTGCCACAAGCCGAACTTCGCCTTCTATGTTCATTGCTTGCACGAGAAGGGCTTTCAGATAATGCATATACTCTTGTGGCTGAGGTAATGAAGAAGTTGGTGGCAATTGTTCCTACCCATTCCAATCTGTTTATTACTGAGCTAGCAGATGCTATAAGAAGTTTGACTAGATCTGCCATGGATGAGTTGCACAAGTTTGGAGAAGCAGTGAAAGAGCTCCTAAGTACCAAGTCGTCTGATGGAGCTGCTATTTTAAGAGTGTTGCAGGCATTGAGCTCCCTTGTTGCCTCCCTGATTGAGAAAGAGAAGGATCCACAGATACTTGCAAACAAGGAGCACACTACTCTTTCCCAGGTTTGGGATATCAATGCAGCTTTGGAACCTTTGTGGCTTGAGCTAAGCAGTTGCATAAGTAAGATAGAAAGCTATTCAGAAACCACCCCTGATTTGTTGACCTCATATAGAGCTTCCACATCTAAACCATCTGGTGTAATTCCTCCCTTGCCTGCTGGGACTCAAAACATTTTGCCATACATAGAATCCTTCTTTGTGGTTTGTGAGAAATTGCATCCTGGGCAGCCAGGCCCTGGTAACGACTTCAGCATTGCTGCAGTTTCTGAGGTTGAGGATGCCAGTACATCTGCTAGCCTGCAGAAATCCTCGACTCCCACTGTCAAAGTGGATGAGAAACATGTTGCTTTTATGAAGTTCTCAGAGAAACATAGGAAGTTACTAAATGCTTTCATCCGTCAAAATCCTGGTTTGCTGGAAAAGTCTTTCTCACTGATGCTGAAGGTTCCTCGCTTTATTGATTTTGACAACAAACGTGCTCACTTCAGGTCAAAGATTAAGCATCAACATGATCACCACCACAATCCTCTAAGAATTTCTGTAAGAAGAGCATACATTCTTGAAGATTCATATAACCAGCTTCGCATGCGGTCAACTCAAGATTTGAAGGGAAGATTGACTGTTCACTTTCAAGGAGAGGAAGGAATTGATGCTGGTGGACTCACAAGGGAATGGTATCAGTTGCTGTCCAGGGTTATCTTTGACAAGGGAGCACTACTATTTACAACTGTGGGCAATGAATCAACTTTTCAACCCAACCCCAACTCTGTTTACCAAACAGAACATCTTTCATATTTCAAGTTTGTTGGGCGAGTGGTTGGGAAAGCACTTTTTGATGGTCAATTACTGGATGTCCATTTTACTCGATCCTTCTACAAGCACATTTTGGGGGCTAAGGTGACTTATCATGATATTGAGGCCATTGATCCTGATTACTTTAAAAACCTCAAGTGGATGCTGGAGAATGATATAAGTGATGTTCTAGACCTTACTTTCAGCATCGATGCAGATGAGGAGAAACTGATATTATATGAAAGAACAGAAGTTACTGACTATGAACTGATTCCTGGAGGTCAAAACATTAAAGTTACAGAAGAAAATAAGCACCAATATGTTGACTTAGTTGCAGAGCATCGATTAACAACTGCTATTCGTCCCCAGATAAATGCCTTTTTGGAAGGATTTTCTGAATTAATTCCTAGGGAACTAATATCCATTTTCAATGACAAGGAACTGGAACTATTGATCAGCGGGCTTCCAGATATTGACTTGGATGACATGAGGGCAAATACTGAATATTCTGGTTACAGCCCTGGATCGCCCGTGATACAGTGGTTCTGGGAAGTTGTCCAAGCTCTTAGTAAGGAGGATAAAGCTCGTCTATTGCAGTTTGTTACTGGCACCTCAAAGGTACCTTTGGAAGGTTTTAGTGCACTTCAGGGAATTTCAGGCTCGCAGAAGTTCCAAATACACAAAGCGTATGGAAGCCCTGATCACTTGCCATCTGCACATACATGTTTCAATCAGTTGGATTTACCAGAGTATCCTTCTAAGCAACATCTTGAAGAGAGATTGCTTCTTGCGATTCATGAAGCCAACGAGGGATTTGGCTTTGGTTAA

Protein Analysis

3683

Amino Acids

404.94

Weight (kDa)

5.11

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF908 PF06012 106 - 410 3.8e-32 Domain of Unknown Function (DUF908)
DUF913 PF06025 473 - 807 4.5e-60 Domain of Unknown Function (DUF913)
UBA PF00627 1302 - 1339 6.1e-09 UBA/TS-N domain
UBA_7 PF22562 1303 - 1349 9.8e-14 UBA-like domain
UBM PF14377 2593 - 2616 3.3e-07 Ubiquitin binding region
UBM PF14377 2627 - 2655 3e-11 Ubiquitin binding region
UBM PF14377 2664 - 2695 1e-06 Ubiquitin binding region
HECT PF00632 3371 - 3681 2.1e-99 HECT-domain (ubiquitin-transferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 782, 3809, 8151
AarI CACCTGC 1 cut(s) 4534
AasI GACNNNNNNGTC 1 cut(s) 253
AatII GACGTC 2 cut(s) 6835, 8201
Acc16I TGCGCA 1 cut(s) 990
Acc36I ACCTGC 4 cut(s) 921, 4239, 4534, 9087
Acc65I GGTACC 2 cut(s) 4340, 10840
AccB1I GGYRCC 6 cut(s) 856, 4340, 4495, 7348, 10829, 10840
AccB7I CCANNNNNTGG 5 cut(s) 2323, 3742, 5794, 7984, 9665
AccBSI CCGCTC 1 cut(s) 1147
AccI GTMKAC 5 cut(s) 1031, 3205, 3382, 3789, 6442
AccII CGCG 5 cut(s) 2982, 2994, 3706, 5843, 8541
AccIII TCCGGA 2 cut(s) 7509, 7921
AcyI GRCGYC 3 cut(s) 6832, 7045, 8198
AdeI CACNNNGTG 2 cut(s) 5726, 7595
AflIII ACRYGT 4 cut(s) 6121, 7386, 9769, 10943
AgeI ACCGGT 1 cut(s) 7195
AhdI GACNNNNNGTC 1 cut(s) 3440
AhlI ACTAGT 1 cut(s) 3155
AjiI CACGTC 1 cut(s) 6124
AjuI GAANNNNNNNTTGG 2 cut(s) 1801, 1833
AleI CACNNNNGTG 2 cut(s) 1900, 4970
AloI GAACNNNNNNTCC 6 cut(s) 2867, 2899, 4001, 4033, 6765, 6797
Alw44I GTGCAC 2 cut(s) 4062, 10860
Aor13HI TCCGGA 2 cut(s) 7509, 7921
ApaLI GTGCAC 2 cut(s) 4062, 10860
ArsI GACNNNNNNTTYG 2 cut(s) 4246, 4278
AseI ATTAAT 3 cut(s) 6285, 6738, 10622
AsiGI ACCGGT 1 cut(s) 7195
Asp718I GGTACC 2 cut(s) 4340, 10840
AspA2I CCTAGG 2 cut(s) 6944, 10628
AspLEI GCGC 7 cut(s) 62, 469, 991, 2073, 2996, 6843, 8543
AsuC2I CCSGG 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 6140
AsuNHI GCTAGC 4 cut(s) 2164, 3596, 9220, 9722
AvrII CCTAGG 2 cut(s) 6944, 10628
AxyI CCTNAGG 2 cut(s) 2534, 7806
BaeGI GKGCMC 5 cut(s) 1153, 3886, 4066, 4500, 10864
BamHI GGATCC 5 cut(s) 3983, 4921, 5053, 8216, 9388
BanI GGYRCC 6 cut(s) 856, 4340, 4495, 7348, 10829, 10840
BanII GRGCYC 7 cut(s) 1583, 3107, 3508, 8296, 8698, 9297, 9356
BauI CACGAG 6 cut(s) 903, 4059, 5878, 6963, 8697, 9120
BbsI GAAGAC 3 cut(s) 1832, 2073, 2223
BbvCI CCTCAGC 1 cut(s) 9159
BceAI ACGGC 6 cut(s) 10, 73, 79, 3619, 7695, 7760
BcgI CGANNNNNNTGC 2 cut(s) 7538, 7572
BciVI GTATCC 3 cut(s) 1015, 8184, 10983
BclI TGATCA 8 cut(s) 3277, 6090, 6178, 6613, 6622, 9940, 10674, 10921
BcnI CCSGG 1 cut(s) 31
BcuI ACTAGT 1 cut(s) 3155
BfoI RGCGCY 1 cut(s) 63
BfuAI ACCTGC 4 cut(s) 921, 4239, 4534, 9087
BfuI GTATCC 3 cut(s) 1015, 8184, 10983
BglII AGATCT 8 cut(s) 793, 1679, 3305, 3950, 4444, 6343, 8204, 9248
BlnI CCTAGG 2 cut(s) 6944, 10628
BlpI GCTNAGC 2 cut(s) 6264, 9476
BmcAI AGTACT 2 cut(s) 327, 763
BmeRI GACNNNNNGTC 1 cut(s) 3440
BmgBI CACGTC 1 cut(s) 6124
BmrI ACTGGG 2 cut(s) 1335, 6282
BmtI GCTAGC 4 cut(s) 2168, 3600, 9224, 9726
BmuI ACTGGG 2 cut(s) 1335, 6282
BoxI GACNNNNGTC 1 cut(s) 6922
BpiI GAAGAC 3 cut(s) 1832, 2073, 2223
BplI GAGNNNNNCTC 2 cut(s) 6986, 7018
BpmI CTGGAG 9 cut(s) 1202, 1883, 3407, 3931, 6243, 6437, 6737, 10409, 10518
Bpu10I CCTNAGC 3 cut(s) 8271, 9159, 10323
Bpu1102I GCTNAGC 2 cut(s) 6264, 9476
Bpu14I TTCGAA 1 cut(s) 6140
BpuEI CTTGAG 8 cut(s) 606, 4937, 6500, 7148, 8655, 9491, 10011, 10361
BpuMI CCSGG 1 cut(s) 31
Bsa29I ATCGAT 2 cut(s) 10431, 10564
BsaAI YACGTR 2 cut(s) 5374, 8255
BsaBI GATNNNNATC 2 cut(s) 1386, 7893
BsaHI GRCGYC 3 cut(s) 6832, 7045, 8198
BsaI GGTCTC 3 cut(s) 1922, 3385, 4221
BsaWI WCCGGW 6 cut(s) 167, 4874, 7195, 7509, 7921, 8887
Bse118I RCCGGY 2 cut(s) 7195, 8098
Bse21I CCTNAGG 2 cut(s) 2534, 7806
Bse8I GATNNNNATC 2 cut(s) 1386, 7893
BseAI TCCGGA 2 cut(s) 7509, 7921
BseCI ATCGAT 2 cut(s) 10431, 10564
BseJI GATNNNNATC 2 cut(s) 1386, 7893
BseSI GKGCMC 5 cut(s) 1153, 3886, 4066, 4500, 10864
BseYI CCCAGC 8 cut(s) 177, 561, 1871, 2685, 3175, 4826, 7732, 9587
BsgI GTGCAG 8 cut(s) 2262, 2490, 2592, 2679, 7578, 7818, 9060, 10920
Bsh1236I CGCG 5 cut(s) 2982, 2994, 3706, 5843, 8541
Bsh1285I CGRYCG 1 cut(s) 7160
BshNI GGYRCC 6 cut(s) 856, 4340, 4495, 7348, 10829, 10840
BshTI ACCGGT 1 cut(s) 7195
BshVI ATCGAT 2 cut(s) 10431, 10564
BsiEI CGRYCG 1 cut(s) 7160
BsiSI CCGG 8 cut(s) 31, 168, 4875, 7196, 7510, 7922, 8099, 8888
BslFI GGGAC 6 cut(s) 13, 2596, 3882, 7960, 9604, 10569
BsmBI CGTCTC 3 cut(s) 102, 3905, 8189
BsmFI GGGAC 6 cut(s) 13, 2596, 3882, 7960, 9604, 10569
Bso31I GGTCTC 3 cut(s) 1922, 3385, 4221
Bsp119I TTCGAA 1 cut(s) 6140
Bsp13I TCCGGA 2 cut(s) 7509, 7921
Bsp1407I TGTACA 2 cut(s) 936, 2428
Bsp1720I GCTNAGC 2 cut(s) 6264, 9476
Bsp19I CCATGG 6 cut(s) 2469, 3741, 6222, 6435, 7048, 9255
Bsp68I TCGCGA 1 cut(s) 2982
BspDI ATCGAT 2 cut(s) 10431, 10564
BspEI TCCGGA 2 cut(s) 7509, 7921
BspFNI CGCG 5 cut(s) 2982, 2994, 3706, 5843, 8541
BspHI TCATGA 6 cut(s) 1141, 1693, 6463, 6625, 10336, 11017
BspMAI CTGCAG 8 cut(s) 932, 2260, 2275, 4197, 5983, 8376, 9691, 9732
BspMI ACCTGC 4 cut(s) 921, 4239, 4534, 9087
BspOI GCTAGC 4 cut(s) 2168, 3600, 9224, 9726
BspQI GCTCTTC 6 cut(s) 1287, 2055, 2533, 2787, 7806, 9970
BspT104I TTCGAA 1 cut(s) 6140
BspT107I GGYRCC 6 cut(s) 856, 4340, 4495, 7348, 10829, 10840
BspTNI GGTCTC 3 cut(s) 1922, 3385, 4221
BsrBI CCGCTC 1 cut(s) 1147
BsrFI RCCGGY 2 cut(s) 7195, 8098
BsrGI TGTACA 2 cut(s) 936, 2428
BssAI RCCGGY 2 cut(s) 7195, 8098
BssNAI GTATAC 2 cut(s) 1032, 6443
BssNI GRCGYC 3 cut(s) 6832, 7045, 8198
BssSI CACGAG 6 cut(s) 903, 4059, 5878, 6963, 8697, 9120
Bst1107I GTATAC 2 cut(s) 1032, 6443
Bst2BI CACGAG 6 cut(s) 903, 4059, 5878, 6963, 8697, 9120
BstACI GRCGYC 3 cut(s) 6832, 7045, 8198
BstAPI GCANNNNNTGC 6 cut(s) 948, 1103, 1133, 3269, 5534, 5585
BstAUI TGTACA 2 cut(s) 936, 2428
BstBAI YACGTR 2 cut(s) 5374, 8255
BstBI TTCGAA 1 cut(s) 6140
BstDSI CCRYGG 6 cut(s) 2469, 3741, 6222, 6435, 7048, 9255
BstEII GGTNACC 1 cut(s) 6109
BstENI CCTNNNNNAGG 4 cut(s) 4729, 4937, 8254, 10848
BstFNI CGCG 5 cut(s) 2982, 2994, 3706, 5843, 8541
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 7 cut(s) 62, 469, 991, 2073, 2996, 6843, 8543
BstMCI CGRYCG 1 cut(s) 7160
BstPAI GACNNNNGTC 1 cut(s) 6922
BstPI GGTNACC 1 cut(s) 6109
BstSLI GKGCMC 5 cut(s) 1153, 3886, 4066, 4500, 10864
BstSNI TACGTA 1 cut(s) 5374
BstUI CGCG 5 cut(s) 2982, 2994, 3706, 5843, 8541
BstV2I GAAGAC 3 cut(s) 1832, 2073, 2223
BstXI CCANNNNNNTGG 5 cut(s) 1948, 3994, 4078, 6299, 7091
BstZ17I GTATAC 2 cut(s) 1032, 6443
Bsu15I ATCGAT 2 cut(s) 10431, 10564
Bsu36I CCTNAGG 2 cut(s) 2534, 7806
BsuI GTATCC 3 cut(s) 1015, 8184, 10983
BsuTUI ATCGAT 2 cut(s) 10431, 10564
BtgI CCRYGG 6 cut(s) 2469, 3741, 6222, 6435, 7048, 9255
BtrI CACGTC 1 cut(s) 6124
BtsI GCAGTG 2 cut(s) 2696, 9291
BtuMI TCGCGA 1 cut(s) 2982
BveI ACCTGC 4 cut(s) 921, 4239, 4534, 9087
CciI TCATGA 6 cut(s) 1141, 1693, 6463, 6625, 10336, 11017
CfoI GCGC 7 cut(s) 62, 469, 991, 2073, 2996, 6843, 8543
Cfr10I RCCGGY 2 cut(s) 7195, 8098
ClaI ATCGAT 2 cut(s) 10431, 10564
CseI GACGC 3 cut(s) 5976, 7053, 8957
CsiI ACCWGGT 1 cut(s) 3621
CspAI ACCGGT 1 cut(s) 7195
CspCI CAANNNNNGTGG 6 cut(s) 2037, 2072, 3228, 3263, 8790, 8825
DraI TTTAAA 2 cut(s) 822, 10369
DraIII CACNNNGTG 2 cut(s) 5726, 7595
DrdI GACNNNNNNGTC 1 cut(s) 253
DriI GACNNNNNGTC 1 cut(s) 3440
DseDI GACNNNNNNGTC 1 cut(s) 253
Eam1105I GACNNNNNGTC 1 cut(s) 3440
EciI GGCGGA 2 cut(s) 40, 4895
Ecl136II GAGCTC 5 cut(s) 1581, 3105, 8294, 9295, 9354
Eco105I TACGTA 1 cut(s) 5374
Eco147I AGGCCT 4 cut(s) 4273, 7258, 8244, 8260
Eco24I GRGCYC 7 cut(s) 1583, 3107, 3508, 8296, 8698, 9297, 9356
Eco31I GGTCTC 3 cut(s) 1922, 3385, 4221
Eco32I GATATC 3 cut(s) 7927, 8762, 9442
Eco53kI GAGCTC 5 cut(s) 1581, 3105, 8294, 9295, 9354
Eco81I CCTNAGG 2 cut(s) 2534, 7806
Eco91I GGTNACC 1 cut(s) 6109
EcoICRI GAGCTC 5 cut(s) 1581, 3105, 8294, 9295, 9354
EcoNI CCTNNNNNAGG 4 cut(s) 4729, 4937, 8254, 10848
EcoO109I RGGNCCY 3 cut(s) 3730, 5115, 9662
EcoO65I GGTNACC 1 cut(s) 6109
EcoRI GAATTC 3 cut(s) 4321, 4561, 8430
EcoRV GATATC 3 cut(s) 7927, 8762, 9442
EcoT22I ATGCAT 5 cut(s) 498, 4761, 6390, 6933, 9145
EcoT38I GRGCYC 7 cut(s) 1583, 3107, 3508, 8296, 8698, 9297, 9356
Esp3I CGTCTC 3 cut(s) 102, 3905, 8189
FaqI GGGAC 6 cut(s) 13, 2596, 3882, 7960, 9604, 10569
FauI CCCGC 4 cut(s) 1140, 5021, 7440, 10673
FauNDI CATATG 2 cut(s) 801, 1657
FbaI TGATCA 8 cut(s) 3277, 6090, 6178, 6613, 6622, 9940, 10674, 10921
FblI GTMKAC 5 cut(s) 1031, 3205, 3382, 3789, 6442
FriOI GRGCYC 7 cut(s) 1583, 3107, 3508, 8296, 8698, 9297, 9356
FspAI RTGCGCAY 1 cut(s) 990
FspI TGCGCA 1 cut(s) 990
GlaI GCGC 7 cut(s) 61, 468, 990, 2072, 2995, 6842, 8542
GsaI CCCAGC 8 cut(s) 181, 565, 1875, 2689, 3179, 4830, 7736, 9591
GsuI CTGGAG 9 cut(s) 1202, 1883, 3407, 3931, 6243, 6437, 6737, 10409, 10518
HaeII RGCGCY 1 cut(s) 63
HapII CCGG 8 cut(s) 31, 168, 4875, 7196, 7510, 7922, 8099, 8888
HgaI GACGC 3 cut(s) 5976, 7053, 8957
HhaI GCGC 7 cut(s) 62, 469, 991, 2073, 2996, 6843, 8543
Hin1I GRCGYC 3 cut(s) 6832, 7045, 8198
Hin6I GCGC 7 cut(s) 60, 467, 989, 2071, 2994, 6841, 8541
HinP1I GCGC 7 cut(s) 60, 467, 989, 2071, 2994, 6841, 8541
HpaI GTTAAC 2 cut(s) 7327, 8064
HpaII CCGG 8 cut(s) 31, 168, 4875, 7196, 7510, 7922, 8099, 8888
Hpy99I CGWCG 3 cut(s) 59, 3207, 3210
HpyCH4IV ACGT 8 cut(s) 5373, 6123, 6832, 8198, 8254, 8495, 8625, 9904
HpySE526I ACGT 8 cut(s) 5373, 6123, 6832, 8198, 8254, 8495, 8625, 9904
Hsp92I GRCGYC 3 cut(s) 6832, 7045, 8198
HspAI GCGC 7 cut(s) 60, 467, 989, 2071, 2994, 6841, 8541
Kpn2I TCCGGA 2 cut(s) 7509, 7921
KpnI GGTACC 2 cut(s) 4344, 10844
Ksp22I TGATCA 8 cut(s) 3277, 6090, 6178, 6613, 6622, 9940, 10674, 10921
KspAI GTTAAC 2 cut(s) 7327, 8064
LguI GCTCTTC 6 cut(s) 1287, 2055, 2533, 2787, 7806, 9970
MabI ACCWGGT 1 cut(s) 3621
MaeII ACGT 8 cut(s) 5373, 6123, 6832, 8198, 8254, 8495, 8625, 9904
MbiI CCGCTC 1 cut(s) 1147
MfeI CAATTG 5 cut(s) 3421, 3482, 7148, 7776, 9183
MmeI TCCRAC 7 cut(s) 1280, 1382, 2541, 3961, 5998, 6895, 10938
Mph1103I ATGCAT 5 cut(s) 498, 4761, 6390, 6933, 9145
MroI TCCGGA 2 cut(s) 7509, 7921
MspI CCGG 8 cut(s) 31, 168, 4875, 7196, 7510, 7922, 8099, 8888
MunI CAATTG 5 cut(s) 3421, 3482, 7148, 7776, 9183
MvnI CGCG 5 cut(s) 2982, 2994, 3706, 5843, 8541
NciI CCSGG 1 cut(s) 31
NcoI CCATGG 6 cut(s) 2469, 3741, 6222, 6435, 7048, 9255
NdeI CATATG 2 cut(s) 801, 1657
NheI GCTAGC 4 cut(s) 2164, 3596, 9220, 9722
NmeAIII GCCGAG 2 cut(s) 45, 4600
NmuCI GTSAC 8 cut(s) 1774, 3125, 3566, 5141, 6316, 7544, 8687, 10327
NruI TCGCGA 1 cut(s) 2982
NsbI TGCGCA 1 cut(s) 990
NsiI ATGCAT 5 cut(s) 498, 4761, 6390, 6933, 9145
NspV TTCGAA 1 cut(s) 6140
OliI CACNNNNGTG 2 cut(s) 1900, 4970
PaeI GCATGC 3 cut(s) 3302, 4763, 10018
PagI TCATGA 6 cut(s) 1141, 1693, 6463, 6625, 10336, 11017
PaqCI CACCTGC 1 cut(s) 4534
PceI AGGCCT 4 cut(s) 4273, 7258, 8244, 8260
PciI ACATGT 3 cut(s) 7386, 9769, 10943
PciSI GCTCTTC 6 cut(s) 1287, 2055, 2533, 2787, 7806, 9970
PcsI WCGNNNNNNNCGW 3 cut(s) 910, 8152, 8338
PflFI GACNNNGTC 1 cut(s) 7056
PflMI CCANNNNNTGG 5 cut(s) 2323, 3742, 5794, 7984, 9665
PfoI TCCNGGA 3 cut(s) 29, 8518, 10495
PinAI ACCGGT 1 cut(s) 7195
Ppu21I YACGTR 2 cut(s) 5374, 8255
PpuMI RGGWCCY 1 cut(s) 3730
PscI ACATGT 3 cut(s) 7386, 9769, 10943
PshAI GACNNNNGTC 1 cut(s) 6922
PshBI ATTAAT 3 cut(s) 6285, 6738, 10622
PsiI TTATAA 3 cut(s) 782, 3809, 8151
Psp124BI GAGCTC 5 cut(s) 1583, 3107, 8296, 9297, 9356
Psp5II RGGWCCY 1 cut(s) 3730
PspEI GGTNACC 1 cut(s) 6109
PspFI CCCAGC 8 cut(s) 177, 561, 1871, 2685, 3175, 4826, 7732, 9587
PspPPI RGGWCCY 1 cut(s) 3730
PsrI GAACNNNNNNTAC 2 cut(s) 10459, 10491
PstI CTGCAG 8 cut(s) 932, 2260, 2275, 4197, 5983, 8376, 9691, 9732
PsyI GACNNNGTC 1 cut(s) 7056
PvuII CAGCTG 6 cut(s) 1460, 2255, 4774, 6263, 7250, 8371
RruI TCGCGA 1 cut(s) 2982
SacI GAGCTC 5 cut(s) 1583, 3107, 8296, 9297, 9356
SalI GTCGAC 2 cut(s) 3204, 3788
SapI GCTCTTC 6 cut(s) 1287, 2055, 2533, 2787, 7806, 9970
ScaI AGTACT 2 cut(s) 327, 763
SexAI ACCWGGT 1 cut(s) 3621
SfuI TTCGAA 1 cut(s) 6140
SgrDI CGTCGACG 1 cut(s) 3204
SmlI CTYRAG 8 cut(s) 621, 4916, 6479, 7127, 8670, 9470, 10026, 10376
SmoI CTYRAG 8 cut(s) 621, 4916, 6479, 7127, 8670, 9470, 10026, 10376
SnaBI TACGTA 1 cut(s) 5374
SpeI ACTAGT 1 cut(s) 3155
SphI GCATGC 3 cut(s) 3302, 4763, 10018
SseBI AGGCCT 4 cut(s) 4273, 7258, 8244, 8260
SspI AATATT 3 cut(s) 4888, 5685, 10727
SstI GAGCTC 5 cut(s) 1583, 3107, 8296, 9297, 9356
StuI AGGCCT 4 cut(s) 4273, 7258, 8244, 8260
TaiI ACGT 8 cut(s) 5376, 6126, 6835, 8201, 8257, 8498, 8628, 9907
TaqII GACCGA 1 cut(s) 7174
TauI GCSGC 3 cut(s) 5456, 6890, 8583
TseFI GTSAC 8 cut(s) 1774, 3125, 3566, 5141, 6316, 7544, 8687, 10327
Tsp45I GTSAC 8 cut(s) 1774, 3125, 3566, 5141, 6316, 7544, 8687, 10327
TspGWI ACGGA 5 cut(s) 902, 3542, 3579, 5737, 9815
Tth111I GACNNNGTC 1 cut(s) 7056
Van91I CCANNNNNTGG 5 cut(s) 2323, 3742, 5794, 7984, 9665
VneI GTGCAC 2 cut(s) 4062, 10860
VspI ATTAAT 3 cut(s) 6285, 6738, 10622
XagI CCTNNNNNAGG 4 cut(s) 4729, 4937, 8254, 10848
XbaI TCTAGA 4 cut(s) 2785, 3953, 6827, 10411
XcmI CCANNNNNNNNNTGG 5 cut(s) 2803, 4463, 6299, 7091, 9754
XmaJI CCTAGG 2 cut(s) 6944, 10628
XmiI GTMKAC 5 cut(s) 1031, 3205, 3382, 3789, 6442
ZraI GACGTC 2 cut(s) 6833, 8199
ZrmI AGTACT 2 cut(s) 327, 763
Zsp2I ATGCAT 5 cut(s) 498, 4761, 6390, 6933, 9145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.