E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g34290 FvH4_5g34290 |
| malus_domestica | MD08G1203000.v1.1 MD08G1203200.v1.1 MD15G1388600.v1.1 |
| prunus_persica | Prupe.1G535000_v2.0.a1 |
| pyrus_communis | pycom08g17530 pycom15g34850 |
| rosa_chinensis | RchiOBHm_Chr7g0234861 |
| rosa_laevigata | RLG00000001209 |
| rosa_multiflora | Rmu_sc0000039.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00226700 |
| rosa_rugosa | Rorug07G0285700 Rorug07G0285800 |
| rosa_samantha | Rh7AG440400 Rh7BG413200 Rh7CG462100 Rh7DG430100 |
| rosa_wichuraiana | Rw7G036610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3393 |
| AarI | CACCTGC | 2 cut(s) | 1842, 5312 |
| AatII | GACGTC | 2 cut(s) | 2038, 2074 |
| Acc16I | TGCGCA | 1 cut(s) | 831 |
| Acc36I | ACCTGC | 2 cut(s) | 1842, 5312 |
| Acc65I | GGTACC | 1 cut(s) | 5343 |
| AccB1I | GGYRCC | 5 cut(s) | 3515, 4826, 5343, 6068, 6079 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1279, 1462, 4901, 5515 |
| AccI | GTMKAC | 2 cut(s) | 1681, 1773 |
| AccII | CGCG | 1 cut(s) | 6158 |
| AccIII | TCCGGA | 1 cut(s) | 5926 |
| AcoI | YGGCCR | 4 cut(s) | 1127, 4960, 5506, 5740 |
| AcyI | GRCGYC | 3 cut(s) | 2035, 2071, 2284 |
| AdeI | CACNNNGTG | 2 cut(s) | 959, 2837 |
| AflII | CTTAAG | 1 cut(s) | 4564 |
| AflIII | ACRYGT | 4 cut(s) | 1354, 2628, 3363, 5005 |
| AhlI | ACTAGT | 1 cut(s) | 3346 |
| AjiI | CACGTC | 2 cut(s) | 1825, 3929 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4317, 4349 |
| Alw21I | GWGCWC | 4 cut(s) | 3649, 4718, 5146, 6103 |
| Alw26I | GTCTC | 7 cut(s) | 2169, 2552, 2584, 3222, 3262, 3431, 3950 |
| Alw44I | GTGCAC | 1 cut(s) | 6099 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 725, 3604, 4184, 4202, 4463, 4751, 4901 |
| Ama87I | CYCGRG | 2 cut(s) | 2853, 6115 |
| Aor13HI | TCCGGA | 1 cut(s) | 5926 |
| AoxI | GGCC | 9 cut(s) | 359, 873, 1127, 2498, 4897, 4960, 5506, 5586, 5740 |
| ApaI | GGGCCC | 1 cut(s) | 877 |
| ApaLI | GTGCAC | 1 cut(s) | 6099 |
| AseI | ATTAAT | 2 cut(s) | 1977, 5876 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1356, 3297, 4065, 4326, 5730 |
| Asp718I | GGTACC | 1 cut(s) | 5343 |
| AspLEI | GCGC | 5 cut(s) | 655, 832, 2082, 3825, 6158 |
| AsuHPI | GGTGA | 9 cut(s) | 316, 365, 998, 1823, 2849, 3446, 3464, 4523, 5171 |
| AsuNHI | GCTAGC | 2 cut(s) | 1016, 4453 |
| AvaI | CYCGRG | 2 cut(s) | 2853, 6115 |
| AvaII | GGWCC | 7 cut(s) | 890, 1288, 1528, 2156, 2649, 2972, 5653 |
| AxyI | CCTNAGG | 2 cut(s) | 3048, 4975 |
| BaeGI | GKGCMC | 2 cut(s) | 877, 6103 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 603, 636, 2856, 2889, 6194, 6227 |
| BalI | TGGCCA | 2 cut(s) | 4962, 5742 |
| BamHI | GGATCC | 1 cut(s) | 1451 |
| BanI | GGYRCC | 5 cut(s) | 3515, 4826, 5343, 6068, 6079 |
| BanII | GRGCYC | 4 cut(s) | 877, 1509, 3744, 6122 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4528, 4560 |
| BauI | CACGAG | 4 cut(s) | 294, 1703, 4353, 6257 |
| BbsI | GAAGAC | 2 cut(s) | 1313, 4536 |
| Bbv12I | GWGCWC | 4 cut(s) | 3649, 4718, 5146, 6103 |
| BceAI | ACGGC | 2 cut(s) | 2937, 5521 |
| BciVI | GTATCC | 3 cut(s) | 3426, 5966, 6222 |
| BclI | TGATCA | 5 cut(s) | 1411, 1861, 3919, 5176, 5913 |
| BcoDI | GTCTC | 7 cut(s) | 2169, 2552, 2584, 3222, 3262, 3431, 3950 |
| BcuI | ACTAGT | 1 cut(s) | 3346 |
| BfmI | CTRYAG | 6 cut(s) | 14, 1194, 2598, 3620, 4176, 4574 |
| BfrI | CTTAAG | 1 cut(s) | 4564 |
| BfuAI | ACCTGC | 2 cut(s) | 1842, 5312 |
| BfuI | GTATCC | 3 cut(s) | 3426, 5966, 6222 |
| BglII | AGATCT | 2 cut(s) | 804, 1582 |
| BlpI | GCTNAGC | 3 cut(s) | 1503, 3111, 4712 |
| Bme18I | GGWCC | 7 cut(s) | 890, 1288, 1528, 2156, 2649, 2972, 5653 |
| BmeT110I | CYCGRG | 2 cut(s) | 2853, 6115 |
| BmgBI | CACGTC | 2 cut(s) | 1825, 3929 |
| BmrI | ACTGGG | 3 cut(s) | 873, 1471, 2843 |
| BmtI | GCTAGC | 2 cut(s) | 1020, 4457 |
| BmuI | ACTGGG | 3 cut(s) | 873, 1471, 2843 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2161 |
| BpiI | GAAGAC | 2 cut(s) | 1313, 4536 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 6200, 6232 |
| BpmI | CTGGAG | 5 cut(s) | 1012, 1976, 3147, 4727, 6251 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1503, 3111, 4712 |
| BpuEI | CTTGAG | 5 cut(s) | 1355, 2387, 5249, 5600, 5648 |
| Bsa29I | ATCGAT | 4 cut(s) | 812, 5124, 5592, 5670 |
| BsaAI | YACGTR | 2 cut(s) | 3371, 3503 |
| BsaBI | GATNNNNATC | 5 cut(s) | 1416, 1456, 3135, 3991, 5181 |
| BsaHI | GRCGYC | 3 cut(s) | 2035, 2071, 2284 |
| BsaI | GGTCTC | 1 cut(s) | 2584 |
| BsaJI | CCNNGG | 7 cut(s) | 119, 2645, 3519, 4886, 4900, 5358, 6019 |
| BsaWI | WCCGGW | 4 cut(s) | 301, 2509, 5926, 6205 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1390, 1420, 1755, 1785, 4317, 4347, 5789, 5819 |
| Bse118I | RCCGGY | 3 cut(s) | 1125, 3005, 4823 |
| Bse21I | CCTNAGG | 2 cut(s) | 3048, 4975 |
| Bse3DI | GCAATG | 6 cut(s) | 195, 511, 1123, 3492, 3579, 5410 |
| Bse8I | GATNNNNATC | 5 cut(s) | 1416, 1456, 3135, 3991, 5181 |
| BseAI | TCCGGA | 1 cut(s) | 5926 |
| BseCI | ATCGAT | 4 cut(s) | 812, 5124, 5592, 5670 |
| BseDI | CCNNGG | 7 cut(s) | 119, 2645, 3519, 4886, 4900, 5358, 6019 |
| BseJI | GATNNNNATC | 5 cut(s) | 1416, 1456, 3135, 3991, 5181 |
| BseMI | GCAATG | 6 cut(s) | 195, 511, 1123, 3492, 3579, 5410 |
| BseRI | GAGGAG | 6 cut(s) | 1814, 1946, 3065, 4520, 4803, 6248 |
| BseSI | GKGCMC | 2 cut(s) | 877, 6103 |
| BsgI | GTGCAG | 1 cut(s) | 3327 |
| Bsh1236I | CGCG | 1 cut(s) | 6158 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2399 |
| BshFI | GGCC | 9 cut(s) | 361, 875, 1129, 2500, 4899, 4962, 5508, 5588, 5742 |
| BshNI | GGYRCC | 5 cut(s) | 3515, 4826, 5343, 6068, 6079 |
| BshVI | ATCGAT | 4 cut(s) | 812, 5124, 5592, 5670 |
| BsiEI | CGRYCG | 1 cut(s) | 2399 |
| BsiHKAI | GWGCWC | 4 cut(s) | 3649, 4718, 5146, 6103 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2853, 6115 |
| BsiSI | CCGG | 7 cut(s) | 302, 1126, 2510, 3006, 4824, 5927, 6206 |
| BsiWI | CGTACG | 1 cut(s) | 6147 |
| BslFI | GGGAC | 3 cut(s) | 1465, 2368, 3939 |
| BsmAI | GTCTC | 7 cut(s) | 2169, 2552, 2584, 3222, 3262, 3431, 3950 |
| BsmFI | GGGAC | 3 cut(s) | 1465, 2368, 3939 |
| BsmI | GAATGC | 4 cut(s) | 235, 2128, 2832, 3825 |
| BsnI | GGCC | 9 cut(s) | 361, 875, 1129, 2500, 4899, 4962, 5508, 5588, 5742 |
| Bso31I | GGTCTC | 1 cut(s) | 2584 |
| BsoBI | CYCGRG | 2 cut(s) | 2853, 6115 |
| Bsp120I | GGGCCC | 1 cut(s) | 873 |
| Bsp1286I | GDGCHC | 8 cut(s) | 877, 1509, 3649, 3744, 4718, 5146, 6103, 6122 |
| Bsp13I | TCCGGA | 1 cut(s) | 5926 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1503, 3111, 4712 |
| BspANI | GGCC | 9 cut(s) | 361, 875, 1129, 2500, 4899, 4962, 5508, 5588, 5742 |
| BspDI | ATCGAT | 4 cut(s) | 812, 5124, 5592, 5670 |
| BspEI | TCCGGA | 1 cut(s) | 5926 |
| BspFNI | CGCG | 1 cut(s) | 6158 |
| BspHI | TCATGA | 3 cut(s) | 1864, 2788, 5575 |
| BspMAI | CTGCAG | 4 cut(s) | 18, 3624, 4180, 4578 |
| BspMI | ACCTGC | 2 cut(s) | 1842, 5312 |
| BspOI | GCTAGC | 2 cut(s) | 1020, 4457 |
| BspQI | GCTCTTC | 1 cut(s) | 5209 |
| BspT107I | GGYRCC | 5 cut(s) | 3515, 4826, 5343, 6068, 6079 |
| BspTI | CTTAAG | 1 cut(s) | 4564 |
| BspTNI | GGTCTC | 1 cut(s) | 2584 |
| BsrDI | GCAATG | 6 cut(s) | 195, 511, 1123, 3492, 3579, 5410 |
| BsrFI | RCCGGY | 3 cut(s) | 1125, 3005, 4823 |
| BssAI | RCCGGY | 3 cut(s) | 1125, 3005, 4823 |
| BssECI | CCNNGG | 7 cut(s) | 119, 2645, 3519, 4886, 4900, 5358, 6019 |
| BssNAI | GTATAC | 1 cut(s) | 1682 |
| BssNI | GRCGYC | 3 cut(s) | 2035, 2071, 2284 |
| BssSI | CACGAG | 4 cut(s) | 294, 1703, 4353, 6257 |
| BssT1I | CCWWGG | 2 cut(s) | 3519, 6019 |
| Bst1107I | GTATAC | 1 cut(s) | 1682 |
| Bst2BI | CACGAG | 4 cut(s) | 294, 1703, 4353, 6257 |
| Bst6I | CTCTTC | 6 cut(s) | 183, 1058, 2151, 2415, 3948, 5209 |
| BstACI | GRCGYC | 3 cut(s) | 2035, 2071, 2284 |
| BstAFI | CTTAAG | 1 cut(s) | 4564 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 767, 838, 1122, 1834, 3350 |
| BstBAI | YACGTR | 2 cut(s) | 3371, 3503 |
| BstDSI | CCRYGG | 1 cut(s) | 2645 |
| BstEII | GGTNACC | 1 cut(s) | 1342 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 2028, 3047, 6087 |
| BstFNI | CGCG | 1 cut(s) | 6158 |
| BstHHI | GCGC | 5 cut(s) | 655, 832, 2082, 3825, 6158 |
| BstMAI | GTCTC | 7 cut(s) | 2169, 2552, 2584, 3222, 3262, 3431, 3950 |
| BstMCI | CGRYCG | 1 cut(s) | 2399 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2161 |
| BstPI | GGTNACC | 1 cut(s) | 1342 |
| BstSFI | CTRYAG | 6 cut(s) | 14, 1194, 2598, 3620, 4176, 4574 |
| BstSLI | GKGCMC | 2 cut(s) | 877, 6103 |
| BstUI | CGCG | 1 cut(s) | 6158 |
| BstV2I | GAAGAC | 2 cut(s) | 1313, 4536 |
| BstX2I | RGATCY | 8 cut(s) | 166, 804, 1451, 1582, 2011, 3464, 6111, 6199 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1493, 1538, 2330, 2717 |
| BstYI | RGATCY | 8 cut(s) | 166, 804, 1451, 1582, 2011, 3464, 6111, 6199 |
| BstZ17I | GTATAC | 1 cut(s) | 1682 |
| Bsu15I | ATCGAT | 4 cut(s) | 812, 5124, 5592, 5670 |
| Bsu36I | CCTNAGG | 2 cut(s) | 3048, 4975 |
| BsuI | GTATCC | 3 cut(s) | 3426, 5966, 6222 |
| BsuRI | GGCC | 9 cut(s) | 361, 875, 1129, 2500, 4899, 4962, 5508, 5588, 5742 |
| BsuTUI | ATCGAT | 4 cut(s) | 812, 5124, 5592, 5670 |
| BtgI | CCRYGG | 1 cut(s) | 2645 |
| BtrI | CACGTC | 2 cut(s) | 1825, 3929 |
| BtsI | GCAGTG | 2 cut(s) | 964, 4343 |
| BveI | ACCTGC | 2 cut(s) | 1842, 5312 |
| CaiI | CAGNNNCTG | 7 cut(s) | 725, 3604, 4184, 4202, 4463, 4751, 4901 |
| CciI | TCATGA | 3 cut(s) | 1864, 2788, 5575 |
| CfoI | GCGC | 5 cut(s) | 655, 832, 2082, 3825, 6158 |
| Cfr10I | RCCGGY | 3 cut(s) | 1125, 3005, 4823 |
| ClaI | ATCGAT | 4 cut(s) | 812, 5124, 5592, 5670 |
| CpoI | CGGWCCG | 1 cut(s) | 2649 |
| CseI | GACGC | 1 cut(s) | 2273 |
| CsiI | ACCWGGT | 1 cut(s) | 3448 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2421, 2456 |
| CspI | CGGWCCG | 1 cut(s) | 2649 |
| DraI | TTTAAA | 3 cut(s) | 537, 2226, 5608 |
| DraIII | CACNNNGTG | 2 cut(s) | 959, 2837 |
| EaeI | YGGCCR | 4 cut(s) | 1127, 4960, 5506, 5740 |
| Eam1104I | CTCTTC | 6 cut(s) | 183, 1058, 2151, 2415, 3948, 5209 |
| EarI | CTCTTC | 6 cut(s) | 183, 1058, 2151, 2415, 3948, 5209 |
| Eco130I | CCWWGG | 2 cut(s) | 3519, 6019 |
| Eco147I | AGGCCT | 2 cut(s) | 361, 2500 |
| Eco24I | GRGCYC | 4 cut(s) | 877, 1509, 3744, 6122 |
| Eco31I | GGTCTC | 1 cut(s) | 2584 |
| Eco32I | GATATC | 1 cut(s) | 3169 |
| Eco47I | GGWCC | 7 cut(s) | 890, 1288, 1528, 2156, 2649, 2972, 5653 |
| Eco81I | CCTNAGG | 2 cut(s) | 3048, 4975 |
| Eco88I | CYCGRG | 2 cut(s) | 2853, 6115 |
| Eco91I | GGTNACC | 1 cut(s) | 1342 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 2028, 3047, 6087 |
| EcoO109I | RGGNCCY | 4 cut(s) | 873, 874, 890, 4898 |
| EcoO65I | GGTNACC | 1 cut(s) | 1342 |
| EcoRI | GAATTC | 2 cut(s) | 2884, 3143 |
| EcoRV | GATATC | 1 cut(s) | 3169 |
| EcoT14I | CCWWGG | 2 cut(s) | 3519, 6019 |
| EcoT22I | ATGCAT | 4 cut(s) | 6, 1629, 2643, 4378 |
| EcoT38I | GRGCYC | 4 cut(s) | 877, 1509, 3744, 6122 |
| ErhI | CCWWGG | 2 cut(s) | 3519, 6019 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1701, 1733, 4311, 4343 |
| FaqI | GGGAC | 3 cut(s) | 1465, 2368, 3939 |
| FauI | CCCGC | 2 cut(s) | 266, 5989 |
| FbaI | TGATCA | 5 cut(s) | 1411, 1861, 3919, 5176, 5913 |
| FblI | GTMKAC | 2 cut(s) | 1681, 1773 |
| FriOI | GRGCYC | 4 cut(s) | 877, 1509, 3744, 6122 |
| FspI | TGCGCA | 1 cut(s) | 831 |
| GlaI | GCGC | 5 cut(s) | 654, 831, 2081, 3824, 6157 |
| GsuI | CTGGAG | 5 cut(s) | 1012, 1976, 3147, 4727, 6251 |
| HaeIII | GGCC | 9 cut(s) | 361, 875, 1129, 2500, 4899, 4962, 5508, 5588, 5742 |
| HapII | CCGG | 7 cut(s) | 302, 1126, 2510, 3006, 4824, 5927, 6206 |
| HgaI | GACGC | 1 cut(s) | 2273 |
| HhaI | GCGC | 5 cut(s) | 655, 832, 2082, 3825, 6158 |
| Hin1I | GRCGYC | 3 cut(s) | 2035, 2071, 2284 |
| Hin6I | GCGC | 5 cut(s) | 653, 830, 2080, 3823, 6156 |
| HinP1I | GCGC | 5 cut(s) | 653, 830, 2080, 3823, 6156 |
| HincII | GTYRAC | 4 cut(s) | 3236, 3553, 3721, 5808 |
| HindII | GTYRAC | 4 cut(s) | 3236, 3553, 3721, 5808 |
| HindIII | AAGCTT | 6 cut(s) | 791, 1149, 1218, 2463, 3561, 3626 |
| HpaI | GTTAAC | 1 cut(s) | 5808 |
| HpaII | CCGG | 7 cut(s) | 302, 1126, 2510, 3006, 4824, 5927, 6206 |
| HphI | GGTGA | 9 cut(s) | 316, 365, 998, 1823, 2849, 3446, 3464, 4523, 5171 |
| Hpy99I | CGWCG | 4 cut(s) | 1730, 1733, 1736, 1739 |
| HpyCH4IV | ACGT | 7 cut(s) | 1824, 2035, 2071, 3370, 3502, 3639, 3928 |
| HpySE526I | ACGT | 7 cut(s) | 1824, 2035, 2071, 3370, 3502, 3639, 3928 |
| Hsp92I | GRCGYC | 3 cut(s) | 2035, 2071, 2284 |
| HspAI | GCGC | 5 cut(s) | 653, 830, 2080, 3823, 6156 |
| Kpn2I | TCCGGA | 1 cut(s) | 5926 |
| KpnI | GGTACC | 1 cut(s) | 5347 |
| KroI | GCCGGC | 2 cut(s) | 1125, 4823 |
| KroNI | GCCGGC | 2 cut(s) | 1127, 4825 |
| Ksp22I | TGATCA | 5 cut(s) | 1411, 1861, 3919, 5176, 5913 |
| KspAI | GTTAAC | 1 cut(s) | 5808 |
| LguI | GCTCTTC | 1 cut(s) | 5209 |
| MabI | ACCWGGT | 1 cut(s) | 3448 |
| MaeII | ACGT | 7 cut(s) | 1824, 2035, 2071, 3370, 3502, 3639, 3928 |
| MfeI | CAATTG | 5 cut(s) | 711, 3510, 3729, 3996, 4416 |
| MflI | RGATCY | 8 cut(s) | 166, 804, 1451, 1582, 2011, 3464, 6111, 6199 |
| MhlI | GDGCHC | 8 cut(s) | 877, 1509, 3649, 3744, 4718, 5146, 6103, 6122 |
| MlsI | TGGCCA | 2 cut(s) | 4962, 5742 |
| MluNI | TGGCCA | 2 cut(s) | 4962, 5742 |
| MlyI | GAGTC | 5 cut(s) | 1255, 1292, 1364, 1523, 1950 |
| MmeI | TCCRAC | 5 cut(s) | 52, 2134, 4531, 5467, 6177 |
| Mox20I | TGGCCA | 2 cut(s) | 4962, 5742 |
| Mph1103I | ATGCAT | 4 cut(s) | 6, 1629, 2643, 4378 |
| MroI | TCCGGA | 1 cut(s) | 5926 |
| MroNI | GCCGGC | 2 cut(s) | 1125, 4823 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1356, 3297, 4065, 4326, 5730 |
| MscI | TGGCCA | 2 cut(s) | 4962, 5742 |
| MslI | CAYNNNNRTG | 7 cut(s) | 240, 2793, 3689, 3695, 3864, 5172, 5778 |
| Msp20I | TGGCCA | 2 cut(s) | 4962, 5742 |
| MspA1I | CMGCKG | 6 cut(s) | 1502, 2459, 2684, 3604, 3619, 5264 |
| MspCI | CTTAAG | 1 cut(s) | 4564 |
| MspI | CCGG | 7 cut(s) | 302, 1126, 2510, 3006, 4824, 5927, 6206 |
| MunI | CAATTG | 5 cut(s) | 711, 3510, 3729, 3996, 4416 |
| Mva1269I | GAATGC | 4 cut(s) | 235, 2128, 2832, 3825 |
| MvnI | CGCG | 1 cut(s) | 6158 |
| NaeI | GCCGGC | 2 cut(s) | 1127, 4825 |
| NgoMIV | GCCGGC | 2 cut(s) | 1125, 4823 |
| NheI | GCTAGC | 2 cut(s) | 1016, 4453 |
| NmeAIII | GCCGAG | 2 cut(s) | 3053, 3799 |
| NsbI | TGCGCA | 1 cut(s) | 831 |
| NsiI | ATGCAT | 4 cut(s) | 6, 1629, 2643, 4378 |
| PaeI | GCATGC | 4 cut(s) | 8, 2641, 3572, 5257 |
| PaeR7I | CTCGAG | 1 cut(s) | 2853 |
| PagI | TCATGA | 3 cut(s) | 1864, 2788, 5575 |
| PaqCI | CACCTGC | 2 cut(s) | 1842, 5312 |
| PceI | AGGCCT | 2 cut(s) | 361, 2500 |
| PciI | ACATGT | 4 cut(s) | 1354, 2628, 3363, 5005 |
| PciSI | GCTCTTC | 1 cut(s) | 5209 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 1731, 1734, 3394, 5676, 6264 |
| PctI | GAATGC | 4 cut(s) | 235, 2128, 2832, 3825 |
| PdiI | GCCGGC | 2 cut(s) | 1127, 4825 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1356, 3297, 4065, 4326, 5730 |
| Pfl23II | CGTACG | 1 cut(s) | 6147 |
| PflFI | GACNNNGTC | 1 cut(s) | 3254 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1279, 1462, 4901, 5515 |
| PleI | GAGTC | 5 cut(s) | 1255, 1292, 1364, 1522, 1949 |
| PpsI | GAGTC | 5 cut(s) | 1255, 1292, 1364, 1522, 1949 |
| Ppu21I | YACGTR | 2 cut(s) | 3371, 3503 |
| PpuMI | RGGWCCY | 1 cut(s) | 890 |
| PscI | ACATGT | 4 cut(s) | 1354, 2628, 3363, 5005 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2161 |
| PshBI | ATTAAT | 2 cut(s) | 1977, 5876 |
| PsiI | TTATAA | 1 cut(s) | 3393 |
| Psp5II | RGGWCCY | 1 cut(s) | 890 |
| PspEI | GGTNACC | 1 cut(s) | 1342 |
| PspLI | CGTACG | 1 cut(s) | 6147 |
| PspOMI | GGGCCC | 1 cut(s) | 873 |
| PspPPI | RGGWCCY | 1 cut(s) | 890 |
| PspXI | VCTCGAGB | 1 cut(s) | 2853 |
| PstI | CTGCAG | 4 cut(s) | 18, 3624, 4180, 4578 |
| PstNI | CAGNNNCTG | 7 cut(s) | 725, 3604, 4184, 4202, 4463, 4751, 4901 |
| PsuI | RGATCY | 8 cut(s) | 166, 804, 1451, 1582, 2011, 3464, 6111, 6199 |
| PsyI | GACNNNGTC | 1 cut(s) | 3254 |
| PvuII | CAGCTG | 5 cut(s) | 1502, 2459, 2684, 3619, 5264 |
| RseI | CAYNNNNRTG | 7 cut(s) | 240, 2793, 3689, 3695, 3864, 5172, 5778 |
| Rsr2I | CGGWCCG | 1 cut(s) | 2649 |
| RsrII | CGGWCCG | 1 cut(s) | 2649 |
| SapI | GCTCTTC | 1 cut(s) | 5209 |
| SchI | GAGTC | 5 cut(s) | 1255, 1292, 1364, 1523, 1950 |
| SduI | GDGCHC | 8 cut(s) | 877, 1509, 3649, 3744, 4718, 5146, 6103, 6122 |
| SexAI | ACCWGGT | 1 cut(s) | 3448 |
| SfcI | CTRYAG | 6 cut(s) | 14, 1194, 2598, 3620, 4176, 4574 |
| Sfr274I | CTCGAG | 1 cut(s) | 2853 |
| SinI | GGWCC | 7 cut(s) | 890, 1288, 1528, 2156, 2649, 2972, 5653 |
| SlaI | CTCGAG | 1 cut(s) | 2853 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 240, 2793, 3689, 3695, 3864, 5172, 5778 |
| SmlI | CTYRAG | 7 cut(s) | 1334, 2366, 2853, 4564, 5228, 5615, 5627 |
| SmoI | CTYRAG | 7 cut(s) | 1334, 2366, 2853, 4564, 5228, 5615, 5627 |
| SpeI | ACTAGT | 1 cut(s) | 3346 |
| SphI | GCATGC | 4 cut(s) | 8, 2641, 3572, 5257 |
| SseBI | AGGCCT | 2 cut(s) | 361, 2500 |
| SspI | AATATT | 7 cut(s) | 133, 918, 1092, 1441, 2260, 3916, 5966 |
| StuI | AGGCCT | 2 cut(s) | 361, 2500 |
| StyI | CCWWGG | 2 cut(s) | 3519, 6019 |
| TaiI | ACGT | 7 cut(s) | 1827, 2038, 2074, 3373, 3505, 3642, 3931 |
| TaqII | GACCGA | 2 cut(s) | 2413, 2621 |
| TatI | WGTACW | 3 cut(s) | 611, 4949, 5647 |
| TauI | GCSGC | 2 cut(s) | 3604, 4688 |
| TspGWI | ACGGA | 6 cut(s) | 140, 2641, 4105, 5774, 5862, 6165 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3254 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1279, 1462, 4901, 5515 |
| Vha464I | CTTAAG | 1 cut(s) | 4564 |
| VneI | GTGCAC | 1 cut(s) | 6099 |
| VpaK11BI | GGWCC | 7 cut(s) | 890, 1288, 1528, 2156, 2649, 2972, 5653 |
| VspI | ATTAAT | 2 cut(s) | 1977, 5876 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 2028, 3047, 6087 |
| XbaI | TCTAGA | 1 cut(s) | 2066 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 1490, 1538, 1586, 2330, 2717 |
| XhoI | CTCGAG | 1 cut(s) | 2853 |
| XmiI | GTMKAC | 2 cut(s) | 1681, 1773 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1356, 3297, 4065, 4326, 5730 |
| ZraI | GACGTC | 2 cut(s) | 2036, 2072 |
| Zsp2I | ATGCAT | 4 cut(s) | 6, 1629, 2643, 4378 |