E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g34290 FvH4_5g34290 |
| malus_domestica | MD08G1203000.v1.1 MD08G1203200.v1.1 MD15G1388600.v1.1 |
| prunus_persica | Prupe.1G535000_v2.0.a1 |
| pyrus_communis | pycom08g17530 pycom15g34850 |
| rosa_chinensis | RchiOBHm_Chr7g0234861 |
| rosa_laevigata | RLG00000001209 |
| rosa_multiflora | Rmu_sc0000039.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00226700 |
| rosa_rugosa | Rorug07G0285700 Rorug07G0285800 |
| rosa_samantha | Rh7AG440400 Rh7BG413200 Rh7CG462100 Rh7DG430100 |
| rosa_wichuraiana | Rw7G036610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 782, 8136 |
| AarI | CACCTGC | 1 cut(s) | 4522 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 253 |
| AatII | GACGTC | 1 cut(s) | 6823 |
| Acc16I | TGCGCA | 1 cut(s) | 9230 |
| Acc36I | ACCTGC | 4 cut(s) | 921, 4227, 4522, 9048 |
| Acc65I | GGTACC | 2 cut(s) | 856, 10801 |
| AccB1I | GGYRCC | 5 cut(s) | 856, 5498, 7032, 10790, 10801 |
| AccB7I | CCANNNNNTGG | 6 cut(s) | 2311, 3730, 5782, 6034, 6211, 9626 |
| AccBSI | CCGCTC | 1 cut(s) | 1147 |
| AccI | GTMKAC | 6 cut(s) | 3193, 3370, 3777, 4163, 5354, 6430 |
| AccII | CGCG | 6 cut(s) | 2982, 3696, 4290, 5710, 8115, 8526 |
| AclI | AACGTT | 1 cut(s) | 1740 |
| AcyI | GRCGYC | 3 cut(s) | 6820, 7033, 8183 |
| AdeI | CACNNNGTG | 1 cut(s) | 7580 |
| AfeI | AGCGCT | 2 cut(s) | 9255, 10702 |
| AflIII | ACRYGT | 4 cut(s) | 6109, 7371, 8106, 9730 |
| AhlI | ACTAGT | 1 cut(s) | 2987 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1804, 1836, 1955, 1987 |
| AleI | CACNNNNGTG | 1 cut(s) | 1903 |
| Alw44I | GTGCAC | 2 cut(s) | 4050, 10821 |
| Ama87I | CYCGRG | 4 cut(s) | 6396, 7596, 9700, 10349 |
| Aor51HI | AGCGCT | 2 cut(s) | 9255, 10702 |
| ApaLI | GTGCAC | 2 cut(s) | 4050, 10821 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 4234, 4266, 6096, 6128, 6617, 6649 |
| AseI | ATTAAT | 2 cut(s) | 6726, 10583 |
| Asp718I | GGTACC | 2 cut(s) | 856, 10801 |
| AspA2I | CCTAGG | 2 cut(s) | 6932, 10589 |
| AsuC2I | CCSGG | 2 cut(s) | 7697, 8193 |
| AsuII | TTCGAA | 1 cut(s) | 8326 |
| AsuNHI | GCTAGC | 3 cut(s) | 2167, 9181, 9683 |
| AvaI | CYCGRG | 4 cut(s) | 6396, 7596, 9700, 10349 |
| AvrII | CCTAGG | 2 cut(s) | 6932, 10589 |
| AxyI | CCTNAGG | 2 cut(s) | 2522, 7791 |
| BaeGI | GKGCMC | 6 cut(s) | 1153, 4054, 4488, 5503, 7293, 10825 |
| BaeI | ACNNNNGTAYC | 8 cut(s) | 7293, 7326, 7943, 7976, 10709, 10742, 10916, 10949 |
| BamHI | GGATCC | 7 cut(s) | 3971, 4909, 5041, 6200, 7556, 8201, 9349 |
| BanI | GGYRCC | 5 cut(s) | 856, 5498, 7032, 10790, 10801 |
| BanII | GRGCYC | 5 cut(s) | 1117, 3095, 3496, 8281, 8674 |
| BauI | CACGAG | 6 cut(s) | 903, 4047, 6951, 8673, 9081, 10054 |
| BbsI | GAAGAC | 5 cut(s) | 1602, 1835, 2226, 3555, 4038 |
| BbvCI | CCTCAGC | 1 cut(s) | 9120 |
| BceAI | ACGGC | 3 cut(s) | 10, 79, 6427 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 4025, 4059, 8105, 8139 |
| BciVI | GTATCC | 4 cut(s) | 6385, 8169, 10688, 10944 |
| BclI | TGATCA | 8 cut(s) | 2278, 6078, 6166, 6601, 6610, 9901, 10635, 10882 |
| BcnI | CCSGG | 2 cut(s) | 7697, 8193 |
| BcuI | ACTAGT | 1 cut(s) | 2987 |
| BfoI | RGCGCY | 3 cut(s) | 7036, 9257, 10704 |
| BfuAI | ACCTGC | 4 cut(s) | 921, 4227, 4522, 9048 |
| BfuI | GTATCC | 4 cut(s) | 6385, 8169, 10688, 10944 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 9427 |
| BglII | AGATCT | 5 cut(s) | 793, 1682, 4432, 6331, 9209 |
| BlnI | CCTAGG | 2 cut(s) | 6932, 10589 |
| BlpI | GCTNAGC | 2 cut(s) | 6252, 9437 |
| BmcAI | AGTACT | 3 cut(s) | 327, 763, 2197 |
| BmeT110I | CYCGRG | 4 cut(s) | 6396, 7596, 9700, 10349 |
| BmrI | ACTGGG | 1 cut(s) | 6199 |
| BmtI | GCTAGC | 3 cut(s) | 2171, 9185, 9687 |
| BmuI | ACTGGG | 1 cut(s) | 6199 |
| BoxI | GACNNNNGTC | 2 cut(s) | 3144, 6910 |
| BpiI | GAAGAC | 5 cut(s) | 1602, 1835, 2226, 3555, 4038 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 6974, 7006 |
| BpmI | CTGGAG | 7 cut(s) | 1202, 1567, 3395, 3919, 6231, 6725, 10479 |
| Bpu10I | CCTNAGC | 3 cut(s) | 8256, 9120, 10284 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 6252, 9437 |
| Bpu14I | TTCGAA | 1 cut(s) | 8326 |
| BpuEI | CTTGAG | 6 cut(s) | 4925, 6488, 7136, 8883, 9452, 10322 |
| BpuMI | CCSGG | 2 cut(s) | 7697, 8193 |
| Bsa29I | ATCGAT | 1 cut(s) | 10525 |
| BsaAI | YACGTR | 1 cut(s) | 8240 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1386, 7878, 9906 |
| BsaHI | GRCGYC | 3 cut(s) | 6820, 7033, 8183 |
| BsaI | GGTCTC | 4 cut(s) | 1925, 3373, 3698, 4209 |
| BsaWI | WCCGGW | 3 cut(s) | 167, 7225, 8854 |
| Bse118I | RCCGGY | 2 cut(s) | 7094, 8083 |
| Bse21I | CCTNAGG | 2 cut(s) | 2522, 7791 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1386, 7878, 9906 |
| BseCI | ATCGAT | 1 cut(s) | 10525 |
| BseJI | GATNNNNATC | 3 cut(s) | 1386, 7878, 9906 |
| BseSI | GKGCMC | 6 cut(s) | 1153, 4054, 4488, 5503, 7293, 10825 |
| BseYI | CCCAGC | 7 cut(s) | 177, 561, 1874, 2673, 3163, 4814, 9548 |
| BsgI | GTGCAG | 5 cut(s) | 2478, 7563, 7803, 9021, 10881 |
| Bsh1236I | CGCG | 6 cut(s) | 2982, 3696, 4290, 5710, 8115, 8526 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1061, 2980 |
| BshNI | GGYRCC | 5 cut(s) | 856, 5498, 7032, 10790, 10801 |
| BshVI | ATCGAT | 1 cut(s) | 10525 |
| BsiEI | CGRYCG | 2 cut(s) | 1061, 2980 |
| BsiHKCI | CYCGRG | 4 cut(s) | 6396, 7596, 9700, 10349 |
| BsiSI | CCGG | 8 cut(s) | 168, 4118, 7095, 7226, 7696, 8084, 8192, 8855 |
| BslFI | GGGAC | 4 cut(s) | 4463, 9565, 9690, 10530 |
| BsmBI | CGTCTC | 1 cut(s) | 102 |
| BsmFI | GGGAC | 4 cut(s) | 4463, 9565, 9690, 10530 |
| BsmI | GAATGC | 8 cut(s) | 727, 2344, 2851, 6877, 6919, 7575, 8559, 9017 |
| Bso31I | GGTCTC | 4 cut(s) | 1925, 3373, 3698, 4209 |
| BsoBI | CYCGRG | 4 cut(s) | 6396, 7596, 9700, 10349 |
| Bsp119I | TTCGAA | 1 cut(s) | 8326 |
| Bsp1407I | TGTACA | 1 cut(s) | 2416 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 6252, 9437 |
| Bsp19I | CCATGG | 6 cut(s) | 2457, 3507, 3729, 6210, 7036, 9216 |
| BspDI | ATCGAT | 1 cut(s) | 10525 |
| BspFNI | CGCG | 6 cut(s) | 2982, 3696, 4290, 5710, 8115, 8526 |
| BspHI | TCATGA | 8 cut(s) | 1141, 1696, 4372, 5266, 6451, 6613, 7531, 10297 |
| BspMAI | CTGCAG | 8 cut(s) | 932, 2263, 4185, 4761, 8361, 9306, 9652, 9693 |
| BspMI | ACCTGC | 4 cut(s) | 921, 4227, 4522, 9048 |
| BspOI | GCTAGC | 3 cut(s) | 2171, 9185, 9687 |
| BspQI | GCTCTTC | 8 cut(s) | 2058, 2521, 2775, 2856, 3482, 7791, 8649, 9931 |
| BspT104I | TTCGAA | 1 cut(s) | 8326 |
| BspT107I | GGYRCC | 5 cut(s) | 856, 5498, 7032, 10790, 10801 |
| BspTNI | GGTCTC | 4 cut(s) | 1925, 3373, 3698, 4209 |
| BsrBI | CCGCTC | 1 cut(s) | 1147 |
| BsrFI | RCCGGY | 2 cut(s) | 7094, 8083 |
| BsrGI | TGTACA | 1 cut(s) | 2416 |
| BssAI | RCCGGY | 2 cut(s) | 7094, 8083 |
| BssNAI | GTATAC | 2 cut(s) | 5355, 6431 |
| BssNI | GRCGYC | 3 cut(s) | 6820, 7033, 8183 |
| BssSI | CACGAG | 6 cut(s) | 903, 4047, 6951, 8673, 9081, 10054 |
| Bst1107I | GTATAC | 2 cut(s) | 5355, 6431 |
| Bst2BI | CACGAG | 6 cut(s) | 903, 4047, 6951, 8673, 9081, 10054 |
| BstACI | GRCGYC | 3 cut(s) | 6820, 7033, 8183 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 948, 1103, 3257, 5573 |
| BstAUI | TGTACA | 1 cut(s) | 2416 |
| BstBAI | YACGTR | 1 cut(s) | 8240 |
| BstBI | TTCGAA | 1 cut(s) | 8326 |
| BstDSI | CCRYGG | 7 cut(s) | 2457, 3234, 3507, 3729, 6210, 7036, 9216 |
| BstEII | GGTNACC | 1 cut(s) | 6097 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 2238, 4925, 8239, 10809 |
| BstFNI | CGCG | 6 cut(s) | 2982, 3696, 4290, 5710, 8115, 8526 |
| BstH2I | RGCGCY | 3 cut(s) | 7036, 9257, 10704 |
| BstMCI | CGRYCG | 2 cut(s) | 1061, 2980 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 3144, 6910 |
| BstPI | GGTNACC | 1 cut(s) | 6097 |
| BstSLI | GKGCMC | 6 cut(s) | 1153, 4054, 4488, 5503, 7293, 10825 |
| BstUI | CGCG | 6 cut(s) | 2982, 3696, 4290, 5710, 8115, 8526 |
| BstV2I | GAAGAC | 5 cut(s) | 1602, 1835, 2226, 3555, 4038 |
| BstXI | CCANNNNNNTGG | 6 cut(s) | 1951, 3982, 4066, 6287, 7079, 7460 |
| BstZ17I | GTATAC | 2 cut(s) | 5355, 6431 |
| Bsu15I | ATCGAT | 1 cut(s) | 10525 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2522, 7791 |
| BsuI | GTATCC | 4 cut(s) | 6385, 8169, 10688, 10944 |
| BsuTUI | ATCGAT | 1 cut(s) | 10525 |
| BtgI | CCRYGG | 7 cut(s) | 2457, 3234, 3507, 3729, 6210, 7036, 9216 |
| BtgZI | GCGATG | 2 cut(s) | 3711, 5282 |
| BtsI | GCAGTG | 2 cut(s) | 3750, 9252 |
| BveI | ACCTGC | 4 cut(s) | 921, 4227, 4522, 9048 |
| CciI | TCATGA | 8 cut(s) | 1141, 1696, 4372, 5266, 6451, 6613, 7531, 10297 |
| Cfr10I | RCCGGY | 2 cut(s) | 7094, 8083 |
| ClaI | ATCGAT | 1 cut(s) | 10525 |
| CpoI | CGGWCCG | 1 cut(s) | 68 |
| CseI | GACGC | 3 cut(s) | 4279, 5964, 8172 |
| CsiI | ACCWGGT | 1 cut(s) | 3609 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2040, 2075, 3216, 3251 |
| CspI | CGGWCCG | 1 cut(s) | 68 |
| DinI | GGCGCC | 1 cut(s) | 7034 |
| DraI | TTTAAA | 3 cut(s) | 822, 1474, 10330 |
| DraIII | CACNNNGTG | 1 cut(s) | 7580 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 253 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 253 |
| EciI | GGCGGA | 1 cut(s) | 40 |
| Ecl136II | GAGCTC | 3 cut(s) | 1115, 3093, 8279 |
| Eco147I | AGGCCT | 5 cut(s) | 4261, 5104, 7243, 8229, 8245 |
| Eco24I | GRGCYC | 5 cut(s) | 1117, 3095, 3496, 8281, 8674 |
| Eco31I | GGTCTC | 4 cut(s) | 1925, 3373, 3698, 4209 |
| Eco32I | GATATC | 5 cut(s) | 3318, 7912, 8473, 8729, 9403 |
| Eco47III | AGCGCT | 2 cut(s) | 9255, 10702 |
| Eco53kI | GAGCTC | 3 cut(s) | 1115, 3093, 8279 |
| Eco81I | CCTNAGG | 2 cut(s) | 2522, 7791 |
| Eco88I | CYCGRG | 4 cut(s) | 6396, 7596, 9700, 10349 |
| Eco91I | GGTNACC | 1 cut(s) | 6097 |
| EcoICRI | GAGCTC | 3 cut(s) | 1115, 3093, 8279 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 2238, 4925, 8239, 10809 |
| EcoO109I | RGGNCCY | 3 cut(s) | 3718, 9623, 9704 |
| EcoO65I | GGTNACC | 1 cut(s) | 6097 |
| EcoRI | GAATTC | 5 cut(s) | 4309, 4549, 7627, 7886, 8415 |
| EcoRV | GATATC | 5 cut(s) | 3318, 7912, 8473, 8729, 9403 |
| EcoT22I | ATGCAT | 3 cut(s) | 498, 4749, 6378 |
| EcoT38I | GRGCYC | 5 cut(s) | 1117, 3095, 3496, 8281, 8674 |
| EgeI | GGCGCC | 1 cut(s) | 7034 |
| EheI | GGCGCC | 1 cut(s) | 7034 |
| Esp3I | CGTCTC | 1 cut(s) | 102 |
| FaqI | GGGAC | 4 cut(s) | 4463, 9565, 9690, 10530 |
| FauI | CCCGC | 3 cut(s) | 1140, 5009, 7425 |
| FauNDI | CATATG | 1 cut(s) | 1660 |
| FbaI | TGATCA | 8 cut(s) | 2278, 6078, 6166, 6601, 6610, 9901, 10635, 10882 |
| FblI | GTMKAC | 6 cut(s) | 3193, 3370, 3777, 4163, 5354, 6430 |
| FriOI | GRGCYC | 5 cut(s) | 1117, 3095, 3496, 8281, 8674 |
| FspI | TGCGCA | 1 cut(s) | 9230 |
| GsaI | CCCAGC | 7 cut(s) | 181, 565, 1878, 2677, 3167, 4818, 9552 |
| GsuI | CTGGAG | 7 cut(s) | 1202, 1567, 3395, 3919, 6231, 6725, 10479 |
| HaeII | RGCGCY | 3 cut(s) | 7036, 9257, 10704 |
| HapII | CCGG | 8 cut(s) | 168, 4118, 7095, 7226, 7696, 8084, 8192, 8855 |
| HgaI | GACGC | 3 cut(s) | 4279, 5964, 8172 |
| Hin1I | GRCGYC | 3 cut(s) | 6820, 7033, 8183 |
| HincII | GTYRAC | 9 cut(s) | 1993, 3194, 3778, 6193, 7312, 7979, 8049, 9492, 10507 |
| HindII | GTYRAC | 9 cut(s) | 1993, 3194, 3778, 6193, 7312, 7979, 8049, 9492, 10507 |
| HpaI | GTTAAC | 1 cut(s) | 8049 |
| HpaII | CCGG | 8 cut(s) | 168, 4118, 7095, 7226, 7696, 8084, 8192, 8855 |
| Hpy99I | CGWCG | 3 cut(s) | 59, 3195, 3198 |
| HpyCH4IV | ACGT | 6 cut(s) | 1740, 6343, 6820, 8239, 8601, 9865 |
| HpySE526I | ACGT | 6 cut(s) | 1740, 6343, 6820, 8239, 8601, 9865 |
| Hsp92I | GRCGYC | 3 cut(s) | 6820, 7033, 8183 |
| KasI | GGCGCC | 1 cut(s) | 7032 |
| KflI | GGGWCCC | 1 cut(s) | 9704 |
| KpnI | GGTACC | 2 cut(s) | 860, 10805 |
| Ksp22I | TGATCA | 8 cut(s) | 2278, 6078, 6166, 6601, 6610, 9901, 10635, 10882 |
| KspAI | GTTAAC | 1 cut(s) | 8049 |
| LguI | GCTCTTC | 8 cut(s) | 2058, 2521, 2775, 2856, 3482, 7791, 8649, 9931 |
| MabI | ACCWGGT | 1 cut(s) | 3609 |
| MaeII | ACGT | 6 cut(s) | 1740, 6343, 6820, 8239, 8601, 9865 |
| MbiI | CCGCTC | 1 cut(s) | 1147 |
| MfeI | CAATTG | 5 cut(s) | 3409, 3470, 7136, 7761, 9144 |
| Mly113I | GGCGCC | 1 cut(s) | 7033 |
| Mph1103I | ATGCAT | 3 cut(s) | 498, 4749, 6378 |
| MspA1I | CMGCKG | 8 cut(s) | 177, 1460, 2673, 4762, 6251, 7235, 7427, 8356 |
| MspI | CCGG | 8 cut(s) | 168, 4118, 7095, 7226, 7696, 8084, 8192, 8855 |
| MunI | CAATTG | 5 cut(s) | 3409, 3470, 7136, 7761, 9144 |
| Mva1269I | GAATGC | 8 cut(s) | 727, 2344, 2851, 6877, 6919, 7575, 8559, 9017 |
| MvnI | CGCG | 6 cut(s) | 2982, 3696, 4290, 5710, 8115, 8526 |
| NarI | GGCGCC | 1 cut(s) | 7033 |
| NciI | CCSGG | 2 cut(s) | 7697, 8193 |
| NcoI | CCATGG | 6 cut(s) | 2457, 3507, 3729, 6210, 7036, 9216 |
| NdeI | CATATG | 1 cut(s) | 1660 |
| NheI | GCTAGC | 3 cut(s) | 2167, 9181, 9683 |
| NmeAIII | GCCGAG | 3 cut(s) | 4588, 8566, 8870 |
| NmuCI | GTSAC | 7 cut(s) | 1757, 1777, 3113, 5129, 6304, 10288, 10783 |
| NsbI | TGCGCA | 1 cut(s) | 9230 |
| NsiI | ATGCAT | 3 cut(s) | 498, 4749, 6378 |
| NspV | TTCGAA | 1 cut(s) | 8326 |
| OliI | CACNNNNGTG | 1 cut(s) | 1903 |
| PaeI | GCATGC | 3 cut(s) | 3290, 4751, 8309 |
| PaeR7I | CTCGAG | 2 cut(s) | 7596, 10349 |
| PagI | TCATGA | 8 cut(s) | 1141, 1696, 4372, 5266, 6451, 6613, 7531, 10297 |
| PaqCI | CACCTGC | 1 cut(s) | 4522 |
| PceI | AGGCCT | 5 cut(s) | 4261, 5104, 7243, 8229, 8245 |
| PciI | ACATGT | 4 cut(s) | 6109, 7371, 8106, 9730 |
| PciSI | GCTCTTC | 8 cut(s) | 2058, 2521, 2775, 2856, 3482, 7791, 8649, 9931 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 910, 8137, 8323, 9639 |
| PctI | GAATGC | 8 cut(s) | 727, 2344, 2851, 6877, 6919, 7575, 8559, 9017 |
| PflFI | GACNNNGTC | 1 cut(s) | 7044 |
| PflMI | CCANNNNNTGG | 6 cut(s) | 2311, 3730, 5782, 6034, 6211, 9626 |
| PfoI | TCCNGGA | 2 cut(s) | 29, 10456 |
| PluTI | GGCGCC | 1 cut(s) | 7036 |
| Ppu21I | YACGTR | 1 cut(s) | 8240 |
| PpuMI | RGGWCCY | 2 cut(s) | 3718, 9704 |
| PscI | ACATGT | 4 cut(s) | 6109, 7371, 8106, 9730 |
| PshAI | GACNNNNGTC | 2 cut(s) | 3144, 6910 |
| PshBI | ATTAAT | 2 cut(s) | 6726, 10583 |
| PsiI | TTATAA | 2 cut(s) | 782, 8136 |
| Psp124BI | GAGCTC | 3 cut(s) | 1117, 3095, 8281 |
| Psp1406I | AACGTT | 1 cut(s) | 1740 |
| Psp5II | RGGWCCY | 2 cut(s) | 3718, 9704 |
| PspEI | GGTNACC | 1 cut(s) | 6097 |
| PspFI | CCCAGC | 7 cut(s) | 177, 561, 1874, 2673, 3163, 4814, 9548 |
| PspPPI | RGGWCCY | 2 cut(s) | 3718, 9704 |
| PspXI | VCTCGAGB | 1 cut(s) | 7596 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1863, 1895 |
| PstI | CTGCAG | 8 cut(s) | 932, 2263, 4185, 4761, 8361, 9306, 9652, 9693 |
| PsyI | GACNNNGTC | 1 cut(s) | 7044 |
| PvuII | CAGCTG | 6 cut(s) | 1460, 4762, 6251, 7235, 7427, 8356 |
| Rsr2I | CGGWCCG | 1 cut(s) | 68 |
| RsrII | CGGWCCG | 1 cut(s) | 68 |
| SacI | GAGCTC | 3 cut(s) | 1117, 3095, 8281 |
| SalI | GTCGAC | 2 cut(s) | 3192, 3776 |
| SapI | GCTCTTC | 8 cut(s) | 2058, 2521, 2775, 2856, 3482, 7791, 8649, 9931 |
| ScaI | AGTACT | 3 cut(s) | 327, 763, 2197 |
| SexAI | ACCWGGT | 1 cut(s) | 3609 |
| SfoI | GGCGCC | 1 cut(s) | 7034 |
| Sfr274I | CTCGAG | 2 cut(s) | 7596, 10349 |
| SfuI | TTCGAA | 1 cut(s) | 8326 |
| SgrDI | CGTCGACG | 1 cut(s) | 3192 |
| SlaI | CTCGAG | 2 cut(s) | 7596, 10349 |
| SmlI | CTYRAG | 8 cut(s) | 4904, 6467, 7115, 7596, 8898, 9431, 10337, 10349 |
| SmoI | CTYRAG | 8 cut(s) | 4904, 6467, 7115, 7596, 8898, 9431, 10337, 10349 |
| SpeI | ACTAGT | 1 cut(s) | 2987 |
| SphI | GCATGC | 3 cut(s) | 3290, 4751, 8309 |
| SseBI | AGGCCT | 5 cut(s) | 4261, 5104, 7243, 8229, 8245 |
| SspDI | GGCGCC | 1 cut(s) | 7032 |
| SspI | AATATT | 6 cut(s) | 1336, 4876, 5673, 9562, 10416, 10688 |
| SstI | GAGCTC | 3 cut(s) | 1117, 3095, 8281 |
| StuI | AGGCCT | 5 cut(s) | 4261, 5104, 7243, 8229, 8245 |
| TaiI | ACGT | 6 cut(s) | 1743, 6346, 6823, 8242, 8604, 9868 |
| TaqII | GACCGA | 1 cut(s) | 2966 |
| TatI | WGTACW | 9 cut(s) | 183, 325, 731, 761, 1213, 1605, 2195, 2416, 9674 |
| TauI | GCSGC | 4 cut(s) | 217, 2564, 6878, 8559 |
| TseFI | GTSAC | 7 cut(s) | 1757, 1777, 3113, 5129, 6304, 10288, 10783 |
| Tsp45I | GTSAC | 7 cut(s) | 1757, 1777, 3113, 5129, 6304, 10288, 10783 |
| TspGWI | ACGGA | 8 cut(s) | 902, 3006, 3223, 3567, 4883, 8932, 9776, 10887 |
| Tth111I | GACNNNGTC | 1 cut(s) | 7044 |
| Van91I | CCANNNNNTGG | 6 cut(s) | 2311, 3730, 5782, 6034, 6211, 9626 |
| VneI | GTGCAC | 2 cut(s) | 4050, 10821 |
| VspI | ATTAAT | 2 cut(s) | 6726, 10583 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 2238, 4925, 8239, 10809 |
| XbaI | TCTAGA | 5 cut(s) | 2773, 5341, 6088, 9988, 10372 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 2791, 6287, 7079, 7460, 9715 |
| XhoI | CTCGAG | 2 cut(s) | 7596, 10349 |
| XmaJI | CCTAGG | 2 cut(s) | 6932, 10589 |
| XmiI | GTMKAC | 6 cut(s) | 3193, 3370, 3777, 4163, 5354, 6430 |
| ZraI | GACGTC | 1 cut(s) | 6821 |
| ZrmI | AGTACT | 3 cut(s) | 327, 763, 2197 |
| Zsp2I | ATGCAT | 3 cut(s) | 498, 4749, 6378 |