Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003661

Physical Location & Seq

Genomic Coordinates Reverse (-)

25005154 .. 25018593

Gene Structure 13440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34330.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4989 bp

ATGGCCTCAGCTCAAATCTTAGAGGTTCCGACGGAGTCGGTGAGGGCGGTTAGTTTCAGCTTCTTTACAGACGAAGAGGCGTCAAAGCAGAGTGTCGTCAAGATTACTAAACCGGACTTGGTTGATGAATTAGGAACGCCGGTGCAAGGTGGCCTTTATGATCCGGCAATGGGTCCTCTCGACGACAGAAGCCACACATGTTGCAGAACATGTGGCCAGAACGCGTATAATTGCCAAGGCCATTTTGGTCATATTGACATTGTTTTGCCCGTCTATAATCCATTGTTGTTCAATCATCTTTACAAACTTCTACAAAGAACCTGCTTCAATTGTTGCTGTTTTCGAACAAGCCGAGAGCAGGTTCAAAAATGTGTTTCCCAATTGGAACTCGTGATGAGAGGTGATGTTGTTGCGGCAAAGAGATTAGACTCTGACTCGTCTAATCATCACTCATATCTCAAGGAGGGCGGGGAAGGAAATGATAGTGAGAGAGACAGGCATTCGAAGCCGGAAAGATGGACATCTCTTCAGTTCACAGAAGCCATGTCTATTTTGAATTGTTCTCTGGAGACACAACAAACGTGCAAGAATTGTGGACACAAGAATCCTAAAATCACTAAACCGACTTTTGGTTGGTTTGAGAGGAGTGGGGCTGAAAATGCTAGAAAAAATGTAATCAGAAAATGCAAACTGGTAGGACCTTTAACTGTTCAAGAAGAGGGTGAATCTTGTGGCAACGATGTTGATGCAGGCATATCTGATATATCTTGTGCATCCTCATTTGTGACTCAAGATACTGCAACGAAGAAGAGTGAAGAACAAGAGAGCATAGTGCTGGATCAGTATTTTAAGCAGAAAGAAGCCTTATCAGGAGATCTTACACCAAAAAAGGTAAAAGAAATAATGAGCCTTTTGTGGACAAAAGAGGCTCAACTCTGCTCTTATCTTAGTGATATCCAACGCCAAGGAGTGGAAAGAAAAGGTCACTATATGTTTTTCTTAGAGAGTGTTCTTGTACCACCTATCAAATTTCGTCCTCCGGCTCATAGTGGTGATTCTGTGATGGAGCATGCGCAAACTGTTTCATTAGGTGAGGTGGTTCGGGCAAATTCGTACTTGAAAGATGCTCTGGATAAGAACAAAGTGTCGCAGATAATTCAGTGCTGGAAGCGACTTCAGGATTGTATTAATCTAATGTTTGATGGTCAAGGTGGCATTCTGGAGAAGAAGGCAGGCATGTTTCGCCAGAAACTGATGGGAAAGAGGGTTAATTTTGCATGCCGGTCTGTTATATCCCCAGACCCCTATTTAGCTGTTAATGAGATTGGAATTCCACCAATCTTTGCATTGACATTAACATATCCTGAGAGAGTTACTCCGTGGAATGTTTTCAAGTTGAGAAATGCTATTGTCAATGGTTCTGAAATCCATCCTGGAGCTACACACTATATTGATAAAACATCTATCAAGTTGCCTCAAAAGCGGAGGGAGCGCCTTTTATTGTCAAGAAAGTTACCTTCTTCGAAAGGGGCAGGGACACAACATGGGAAGGGATCTGACTACGAAAACAAAATTGTACTTCGTCACTTGCAAGATGGGGACATTGTTCTTGTTAATCGCCAGCCTACACTTCACAAACCCAGTATAATGGCTCATATAGTTCGTGTGTTGAAGGGGGAGAAAACATTACGCATGCACTATGCAAATTGCAGTACATACAATGCAGATTTTGATGGTGATGAAATGAATGTTCATTTGCCACAAGATGAAATTTCTCGTGCTGAAGCTTACAATTTGGTGAACGCAAACAATCAATACGTAAAGCCCACTAGTGGTGTTCCCATTCGAGCCTTAATTCAGGACCATATCATAAGTTCTCTGTTCCTTTCAGAAAAGGACACCTTTTTCGACTTGGATGAAATGAATCAGCTTCTGTATAGTTCTTCTGTTTCAGCATGTGGTTCAGAAACTTTCTCTGGCAAGCCAGGTCAAAAGGTTCTAATGTCCAACTCTGAAGATGCAATGCAGCTCCCCCTTCCTGCAATTTGGAAACCAGTGCGTAAGTGGCCTGGCAAGCAGATCATCACTACCTTGCTAAATCGAATTACAAGTGGTTCTCCCCCACTTACTTTTGAAAAGGAAGCAAAACTTCCATCTGGGTTTTTCAACTGTAAGACTCCTGTAGAAGAAGAGAGATCTGCTAAAGGTCACCGAGCAAAAGAGAAGCAGTCAAGAATAAAAGAAGCTGGTAAAGATGATTCAAGGGAAAAAGAGGAGCCAGATGAGAGCAAGTTGTTAATCTACAAAAACAACTTGGTGCGTGGAGTGATTGACAAAAACCAGTTTGGTGATTATGGTTTGGTCCATAATGTGCAGGAACTCTATGGTTCGGAAGCTGCAGGAAAATTGCTTTCTGCTTTTAGCCGTTTATATACTGTTTATTTACAGATGCATGGGTTCACATGTGGAGTTGACGATCTTTTGCTATTACAAAGCAAAGACAAAAAAATGAAGGAACAACTTGAAAGTTGTGAAGAGCTTGGTGAAAAAGTTATCCGTGAGTTTATTGGGGTCAGACAAAATGAAAGAAAAGGTGCATTGATATTGCAATCGGATATTGAAGAATTTTTGCGCAACAATGGAGAATCTGTGTCGGAAATGTTGGACAGGAAAATGACAAGTGAACTTAATAAGAAAATCTCCAATTCTGATGTCTTCAAACAACTGTTTCAGAAAGGTTTATCAAAACCATCTGTTAAGAATTGTATGTATCTTATGACAAGCTCTGGGGCTAAAGGTGGTGTGGCAAATCTCCAACAAATTGCTGCATACTTGGGTCAGCAAGAGCTAGAAGGCAAGCGAGTCCCTCAAATGGTTTCTGGAAAAACCTTACCATGCTTCCCTCCATGGGATTGGTCACCTCGAGCTGGAGGTTTTATTATTGATCGTTTTCTTACCGGTCTTCATCCTCAGGAGTATTATTTTCACTGCATGGCTGGCCGTGAAGGGCTGGTTGATACAGCTGTTAAAACTTCTCGTAGTGGATACTTGCAAAGATGCTTAATCAAGAATCTCGAATGCCTTAAGGTTTCTTATGACTACACTGTTCGCGATGCTGATGGTTCGATTATTCAATTCCGATATGGGGAGGATGGTATTGATGTCCATTTGACAAGTTTTGTTCAAAAATTTGAAAAACTGGCGAATAATAAAGAAATGTTTGACAAGAGATTTGGTCGTGAAATTGATAAGTTCAATCCCTATATTGATGAGTTGCCTCCCGCTCTCAAAAGAAAAGCAGAGATGTCAGGTCCTGATTTCTCTTTGAAGGAAAAGAATGCCAACTTGAAGTTAATGGAGCACAAATTTCTCAGCAGTCTTGCGCAACCAGGAGAACCAGTTGGTATTCTTGCTGCTCAGTCTGTTGGAGAACCATCAACACAAATGACTCTGAATACCTTCCATAACGCTGGGCGAAGTGAAATGAATGTGACTCTTGGCATTCCTCGGCTCCAAGAGATCTTGATGACTGCTTCAATTGATATCAAGACTCCAGTTATGACATGTCCATTGAGAATGGGGAAAGCGGAAGATGCTAAAAGTCTAGCTGTTAGGTTGAAGAGGATCACCGTGGCAGACATAATAGAGAGCATGAAAGTAAATATTAAACCATTTACACATCAGGACCATCAGACCTGCCGTGTTTATGAGCTTGAGATGACGTTTTTTATACCGGAACATCTTTCGAAATTTTCAGAAGATTGGGAGGAACTCCTAAAGGTTAAATTTGTCAGGGCTTTGGAGGATGCCATACAAAATCATCTTGTTTTGCTTTCTAAAATTAGTGGTATAAAAGATATAAAGGCTGATTCACTGCCGAAGGCATCAAATGAGACAGACGAAGATATTTCTTGTAACATATCCCAGCATGAGGAAGAAGGTGGCGACGATGACAATTTAGATGACAGTGGTGAAGGAGCTGAGGATTTTGGGTTGGATGCACAAAAACGAAAGCGACAGGGTACAGATGAGATGGAGTATGATGATGACTGGGAGGATGAATTGAATGAAGGTCATCATTCTGATGGATTTGACAACGAAATTGATAATGGGGAGATTGATGTTGAAATTGATAAGGATGGTGTGACAGGGATCTCAGATGCTAATGATAAAATGCAAGAAAGTCGTTCAACTGGAGGTATATCTAAGCCACACTCGAAGGGAAAAAAGACCAAATCAAGAGATAAAATAAAAAAGAAGACCAGTGCAAAGCTAGTAAGAAAGGAGTATGACAGGGCAACTTTTGTGTCAGCCAAGGGCTTCCACTTTGAGATCCATTTTAAATTTACCAATGAACCTCATATTCTTTTGGATCAGATTGCTCGGAAGACAGCCCGAAATGTTTATGTCAAAAGCTCTGGCAATATTTTGGATTGTCAAGATATTGATATTTATGGTAATGAAGATCAAGTTTTCTGCTGCTGGAATGATCCCAGAAATAAATTATCGGGTGAAAAGAATCCCTCAGAAGAAGAAAAGAAGATGCGAGCCTTGCAAACAGCAGGCGTGGATTTTGCTACTCTATGGAAACTGCAAGATGTTCTTGATGTCAACTATATATGTTCCAACAACATTCATGCCATGCTGAACACTTACGGAGTAGAAGCTGCCAGAGAAACTATCATCAAAGAAATAAGTAACGTTTTCAAGGTGTATGGGATATCTGTCAATATTAGACACCTTTCACTGATAGCTGACTACATGACTCATAGTGGTGGTTATCGTCCAATGAACAGATTTGGGGGAATAGCGGAGTCTACATCTCCGATGAATAAAATGTCATTTGAGACGGCTTCCAAGTTCATTCAGGAAGCAGCATATCATGGGGAGAAGGATGACTTGGAAACCCCATCTGCTAGGACCTGTCTTGGGCTGCCGGTGAAAGTGGGTACTGGATGTTTTGATTTGATGCACAAGATGGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005911 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

1663

Amino Acids

187.0

Weight (kDa)

6.39

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_2	PF00623	212 - 393	3.1e-59	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	397 - 619	2.5e-28	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	672 - 772	2.1e-21	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	779 - 1397	4.6e-83	RNA polymerase Rpb1, domain 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57660 AT3G57660
fragaria_vesca	FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g35030 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210
malus_domestica	MD12G1066600.v1.1 MD14G1066700.v1.1
prunus_persica	Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1
pyrus_communis	pycom12g05800 pycom14g05430
rosa_chinensis	RchiOBHm_Chr3g0481021
rosa_laevigata	RLG00000023431
rosa_multiflora	Rmu_sc0002927.1_g000058
rosa_roxburghii	Rroxscaffold_6G00400730
rosa_rugosa	Rorug03G0189100
rosa_samantha	Rh3AG240000 Rh3BG275100 Rh3CG270600 Rh3DG266500
rosa_wichuraiana	Rw0G008430 Rw3G021430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	3 cut(s)	1074, 2633, 3384
Acc36I	ACCTGC	3 cut(s)	329, 349, 3704
AccB7I	CCANNNNNTGG	1 cut(s)	970
AccBSI	CCGCTC	1 cut(s)	3284
AccI	GTMKAC	1 cut(s)	4817
AccII	CGCG	2 cut(s)	224, 3111
AciI	CCGC	7 cut(s)	47, 413, 468, 1483, 3282, 3587, 4811
AclI	AACGTT	1 cut(s)	4701
AclWI	GGATC	8 cut(s)	155, 846, 1561, 3632, 4160, 4327, 4380, 4484
AcoI	YGGCCR	2 cut(s)	214, 2998
AcuI	CTGAAG	4 cut(s)	512, 1160, 1803, 2034
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	6 cut(s)	1017, 1115, 1578, 1714, 4024, 4951
AflII	CTTAAG	1 cut(s)	3083
AflIII	ACRYGT	5 cut(s)	197, 209, 222, 2462, 3563
AgeI	ACCGGT	1 cut(s)	2957
AhlI	ACTAGT	1 cut(s)	1829
AjnI	CCWGG	4 cut(s)	1432, 1984, 2068, 3388
AjuI	GAANNNNNNNTTGG	2 cut(s)	4883, 4915
Alw21I	GWGCWC	1 cut(s)	3363
Alw26I	GTCTC	4 cut(s)	486, 563, 3887, 4841
AlwI	GGATC	8 cut(s)	155, 846, 1561, 3632, 4160, 4327, 4380, 4484
AlwNI	CAGNNNCTG	3 cut(s)	1252, 1933, 3314
Ama87I	CYCGRG	1 cut(s)	2922
AoxI	GGCC	6 cut(s)	3, 151, 214, 238, 2066, 2998
ApeKI	GCWGC	8 cut(s)	2026, 2396, 2825, 3413, 4479, 4667, 4874, 4933
ArsI	GACNNNNNNTTYG	4 cut(s)	1889, 1921, 3215, 3247
AseI	ATTAAT	1 cut(s)	1188
AsiGI	ACCGGT	1 cut(s)	2957
Asp700I	GAANNNNTTC	2 cut(s)	1388, 3458
AspLEI	GCGC	4 cut(s)	1075, 1494, 2634, 3385
AspS9I	GGNCC	7 cut(s)	173, 698, 1861, 2362, 3311, 3685, 4920
AsuII	TTCGAA	4 cut(s)	343, 503, 1523, 3746
AvaI	CYCGRG	1 cut(s)	2922
AvaII	GGWCC	7 cut(s)	173, 698, 1861, 2362, 3311, 3685, 4920
AxyI	CCTNAGG	1 cut(s)	2970
BaeI	ACNNNNGTAYC	2 cut(s)	3009, 3042
BalI	TGGCCA	1 cut(s)	216
BauI	CACGAG	2 cut(s)	389, 1776
BbsI	GAAGAC	4 cut(s)	2707, 2954, 4265, 4394
Bbv12I	GWGCWC	1 cut(s)	3363
BbvCI	CCTCAGC	2 cut(s)	7, 3981
BbvI	GCAGC	8 cut(s)	2038, 2383, 2812, 3400, 4466, 4654, 4886, 4920
BceAI	ACGGC	4 cut(s)	2409, 2985, 3684, 4866
BcgI	CGANNNNNNTGC	4 cut(s)	728, 762, 4166, 4200
BciT130I	CCWGG	4 cut(s)	1434, 1986, 2070, 3390
BciVI	GTATCC	1 cut(s)	3038
BcoDI	GTCTC	4 cut(s)	486, 563, 3887, 4841
BcuI	ACTAGT	1 cut(s)	1829
BfaI	CTAG	6 cut(s)	663, 1830, 2849, 3605, 4274, 4917
BfmI	CTRYAG	2 cut(s)	2181, 2397
BfoI	RGCGCY	1 cut(s)	1495
BfrI	CTTAAG	1 cut(s)	3083
BfuAI	ACCTGC	3 cut(s)	329, 349, 3704
BfuI	GTATCC	1 cut(s)	3038
BglII	AGATCT	3 cut(s)	874, 2195, 3519
BisI	GCNGC	9 cut(s)	414, 2027, 2397, 2826, 3414, 4480, 4668, 4875, 4934
BlsI	GCNGC	9 cut(s)	415, 2028, 2398, 2827, 3415, 4481, 4669, 4876, 4935
Bme1390I	CCNGG	4 cut(s)	1434, 1986, 2070, 3390
Bme18I	GGWCC	7 cut(s)	173, 698, 1861, 2362, 3311, 3685, 4920
BmeT110I	CYCGRG	1 cut(s)	2922
BmgT120I	GGNCC	7 cut(s)	173, 698, 1861, 2362, 3311, 3685, 4920
BmiI	GGNNCC	4 cut(s)	27, 174, 2277, 3512
BmrFI	CCNGG	4 cut(s)	1434, 1986, 2070, 3390
BmrI	ACTGGG	2 cut(s)	1635, 4060
BmuI	ACTGGG	2 cut(s)	1635, 4060
BpiI	GAAGAC	4 cut(s)	2707, 2954, 4265, 4394
BplI	GAGNNNNNCTC	2 cut(s)	1360, 1392
BpmI	CTGGAG	6 cut(s)	587, 1241, 1455, 2949, 3537, 4215
Bpu10I	CCTNAGC	2 cut(s)	7, 3981
Bpu14I	TTCGAA	4 cut(s)	343, 503, 1523, 3746
BpuEI	CTTGAG	3 cut(s)	443, 774, 3734
BsaAI	YACGTR	1 cut(s)	1819
BsaBI	GATNNNNATC	1 cut(s)	520
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	7 cut(s)	235, 964, 1379, 2906, 3506, 3630, 4314
BsaWI	WCCGGW	3 cut(s)	112, 2957, 3733
BsaXI	ACNNNNNCTCC	4 cut(s)	2634, 2664, 3384, 3414
Bse118I	RCCGGY	4 cut(s)	139, 1281, 2957, 4936
Bse21I	CCTNAGG	1 cut(s)	2970
Bse3DI	GCAATG	2 cut(s)	174, 2028
Bse8I	GATNNNNATC	1 cut(s)	520
BseBI	CCWGG	4 cut(s)	1434, 1986, 2070, 3390
BseDI	CCNNGG	7 cut(s)	235, 964, 1379, 2906, 3506, 3630, 4314
BseJI	GATNNNNATC	1 cut(s)	520
BseMI	GCAATG	2 cut(s)	174, 2028
BseMII	CTCAG	8 cut(s)	21, 1356, 2984, 3385, 3431, 3972, 4170, 4539
BseRI	GAGGAG	2 cut(s)	658, 2288
BseXI	GCAGC	8 cut(s)	2038, 2383, 2812, 3400, 4466, 4654, 4886, 4920
BseYI	CCCAGC	2 cut(s)	3470, 3924
BsgI	GTGCAG	1 cut(s)	2393
Bsh1236I	CGCG	2 cut(s)	224, 3111
BshFI	GGCC	6 cut(s)	5, 153, 216, 240, 2068, 3000
BshTI	ACCGGT	1 cut(s)	2957
BsiHKAI	GWGCWC	1 cut(s)	3363
BsiHKCI	CYCGRG	1 cut(s)	2922
BsiSI	CCGG	9 cut(s)	113, 140, 164, 509, 1040, 1282, 2958, 3734, 4937
BslFI	GGGAC	3 cut(s)	1549, 1613, 2849
BsmAI	GTCTC	4 cut(s)	486, 563, 3887, 4841
BsmBI	CGTCTC	1 cut(s)	4841
BsmFI	GGGAC	3 cut(s)	1549, 1613, 2849
BsmI	GAATGC	5 cut(s)	499, 1215, 3083, 3343, 3501
BsnI	GGCC	6 cut(s)	5, 153, 216, 240, 2068, 3000
BsoBI	CYCGRG	1 cut(s)	2922
Bsp119I	TTCGAA	4 cut(s)	343, 503, 1523, 3746
Bsp1286I	GDGCHC	1 cut(s)	3363
Bsp19I	CCATGG	1 cut(s)	2906
Bsp68I	TCGCGA	1 cut(s)	3111
BspACI	CCGC	7 cut(s)	47, 413, 468, 1483, 3282, 3587, 4811
BspANI	GGCC	6 cut(s)	5, 153, 216, 240, 2068, 3000
BspCNI	CTCAG	8 cut(s)	20, 1357, 2983, 3384, 3430, 3973, 4169, 4538
BspFNI	CGCG	2 cut(s)	224, 3111
BspLI	GGNNCC	4 cut(s)	27, 174, 2277, 3512
BspMAI	CTGCAG	1 cut(s)	2401
BspMI	ACCTGC	3 cut(s)	329, 349, 3704
BspPI	GGATC	8 cut(s)	155, 846, 1561, 3632, 4160, 4327, 4380, 4484
BspQI	GCTCTTC	1 cut(s)	2529
BspT104I	TTCGAA	4 cut(s)	343, 503, 1523, 3746
BspTI	CTTAAG	1 cut(s)	3083
BsrBI	CCGCTC	1 cut(s)	3284
BsrDI	GCAATG	2 cut(s)	174, 2028
BsrFI	RCCGGY	4 cut(s)	139, 1281, 2957, 4936
BssAI	RCCGGY	4 cut(s)	139, 1281, 2957, 4936
BssECI	CCNNGG	7 cut(s)	235, 964, 1379, 2906, 3506, 3630, 4314
BssNI	GRCGYC	1 cut(s)	80
BssSI	CACGAG	2 cut(s)	389, 1776
BssT1I	CCWWGG	4 cut(s)	235, 964, 2906, 4314
Bst2BI	CACGAG	2 cut(s)	389, 1776
Bst2UI	CCWGG	4 cut(s)	1434, 1986, 2070, 3390
Bst4CI	ACNGT	8 cut(s)	709, 1081, 2171, 2437, 2727, 3106, 3631, 3968
Bst6I	CTCTTC	7 cut(s)	69, 531, 711, 803, 2184, 2529, 3614
BstACI	GRCGYC	1 cut(s)	80
BstAFI	CTTAAG	1 cut(s)	3083
BstBAI	YACGTR	1 cut(s)	1819
BstBI	TTCGAA	4 cut(s)	343, 503, 1523, 3746
BstDSI	CCRYGG	3 cut(s)	1379, 2906, 3630
BstEII	GGTNACC	2 cut(s)	2207, 2916
BstFNI	CGCG	2 cut(s)	224, 3111
BstH2I	RGCGCY	1 cut(s)	1495
BstHHI	GCGC	4 cut(s)	1075, 1494, 2634, 3385
BstMAI	GTCTC	4 cut(s)	486, 563, 3887, 4841
BstNI	CCWGG	4 cut(s)	1434, 1986, 2070, 3390
BstNSI	RCATGY	9 cut(s)	201, 213, 1073, 1240, 1281, 1696, 1959, 2466, 3567
BstPI	GGTNACC	2 cut(s)	2207, 2916
BstSCI	CCNGG	4 cut(s)	1432, 1984, 2068, 3388
BstSFI	CTRYAG	2 cut(s)	2181, 2397
BstSNI	TACGTA	1 cut(s)	1819
BstUI	CGCG	2 cut(s)	224, 3111
BstV1I	GCAGC	8 cut(s)	2038, 2383, 2812, 3400, 4466, 4654, 4886, 4920
BstV2I	GAAGAC	4 cut(s)	2707, 2954, 4265, 4394
BstX2I	RGATCY	6 cut(s)	874, 1553, 2195, 3519, 4152, 4332
BstXI	CCANNNNNNTGG	3 cut(s)	1648, 2913, 3470
BstYI	RGATCY	6 cut(s)	874, 1553, 2195, 3519, 4152, 4332
Bsu36I	CCTNAGG	1 cut(s)	2970
BsuI	GTATCC	1 cut(s)	3038
BsuRI	GGCC	6 cut(s)	5, 153, 216, 240, 2068, 3000
BtgI	CCRYGG	3 cut(s)	1379, 2906, 3630
BtgZI	GCGATG	1 cut(s)	3126
BtsI	GCAGTG	2 cut(s)	2986, 3872
BtsIMutI	CAGTG	8 cut(s)	1166, 2061, 2986, 3102, 3872, 3973, 4270, 4745
BtuMI	TCGCGA	1 cut(s)	3111
BveI	ACCTGC	3 cut(s)	329, 349, 3704
CaiI	CAGNNNCTG	3 cut(s)	1252, 1933, 3314
CfoI	GCGC	4 cut(s)	1075, 1494, 2634, 3385
Cfr10I	RCCGGY	4 cut(s)	139, 1281, 2957, 4936
Cfr13I	GGNCC	7 cut(s)	173, 698, 1861, 2362, 3311, 3685, 4920
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	6 cut(s)	1016, 1114, 1577, 1713, 4023, 4950
CspAI	ACCGGT	1 cut(s)	2957
CspCI	CAANNNNNGTGG	4 cut(s)	182, 217, 574, 609
CviQI	GTAC	6 cut(s)	1016, 1114, 1577, 1713, 4023, 4950
DraI	TTTAAA	1 cut(s)	4342
EaeI	YGGCCR	2 cut(s)	214, 2998
Eam1104I	CTCTTC	7 cut(s)	69, 531, 711, 803, 2184, 2529, 3614
EarI	CTCTTC	7 cut(s)	69, 531, 711, 803, 2184, 2529, 3614
Eco105I	TACGTA	1 cut(s)	1819
Eco130I	CCWWGG	4 cut(s)	235, 964, 2906, 4314
Eco32I	GATATC	3 cut(s)	955, 3544, 4722
Eco47I	GGWCC	7 cut(s)	173, 698, 1861, 2362, 3311, 3685, 4920
Eco57I	CTGAAG	4 cut(s)	512, 1160, 1803, 2034
Eco81I	CCTNAGG	1 cut(s)	2970
Eco88I	CYCGRG	1 cut(s)	2922
Eco91I	GGTNACC	2 cut(s)	2207, 2916
EcoO109I	RGGNCCY	4 cut(s)	173, 698, 3311, 4920
EcoO65I	GGTNACC	2 cut(s)	2207, 2916
EcoRI	GAATTC	1 cut(s)	1329
EcoRII	CCWGG	4 cut(s)	1432, 1984, 2068, 3388
EcoRV	GATATC	3 cut(s)	955, 3544, 4722
EcoT14I	CCWWGG	4 cut(s)	235, 964, 2906, 4314
EcoT22I	ATGCAT	1 cut(s)	2454
ErhI	CCWWGG	4 cut(s)	235, 964, 2906, 4314
Esp3I	CGTCTC	1 cut(s)	4841
FaqI	GGGAC	3 cut(s)	1549, 1613, 2849
FauI	CCCGC	2 cut(s)	461, 3289
FblI	GTMKAC	1 cut(s)	4817
Fnu4HI	GCNGC	9 cut(s)	414, 2027, 2397, 2826, 3414, 4480, 4668, 4875, 4934
Fsp4HI	GCNGC	9 cut(s)	414, 2027, 2397, 2826, 3414, 4480, 4668, 4875, 4934
FspBI	CTAG	6 cut(s)	663, 1830, 2849, 3605, 4274, 4917
FspI	TGCGCA	3 cut(s)	1074, 2633, 3384
GlaI	GCGC	4 cut(s)	1074, 1493, 2633, 3384
GluI	GCNGC	9 cut(s)	414, 2027, 2397, 2826, 3414, 4480, 4668, 4875, 4934
GsaI	CCCAGC	2 cut(s)	3474, 3928
GsuI	CTGGAG	6 cut(s)	587, 1241, 1455, 2949, 3537, 4215
HaeII	RGCGCY	1 cut(s)	1495
HaeIII	GGCC	6 cut(s)	5, 153, 216, 240, 2068, 3000
HapII	CCGG	9 cut(s)	113, 140, 164, 509, 1040, 1282, 2958, 3734, 4937
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	4 cut(s)	1075, 1494, 2634, 3385
Hin1I	GRCGYC	1 cut(s)	80
Hin6I	GCGC	4 cut(s)	1073, 1492, 2632, 3383
HinP1I	GCGC	4 cut(s)	1073, 1492, 2632, 3383
HincII	GTYRAC	2 cut(s)	2473, 4612
HindII	GTYRAC	2 cut(s)	2473, 4612
HindIII	AAGCTT	1 cut(s)	1785
HpaII	CCGG	9 cut(s)	113, 140, 164, 509, 1040, 1282, 2958, 3734, 4937
Hpy166II	GTNNAC	9 cut(s)	534, 596, 918, 1801, 2460, 2473, 2684, 4612, 4818
Hpy8I	GTNNAC	9 cut(s)	534, 596, 918, 1801, 2460, 2473, 2684, 4612, 4818
Hpy99I	CGWCG	3 cut(s)	34, 185, 3950
HpyCH4III	ACNGT	8 cut(s)	709, 1081, 2171, 2437, 2727, 3106, 3631, 3968
HpyCH4IV	ACGT	4 cut(s)	581, 1818, 3722, 4701
HpySE526I	ACGT	4 cut(s)	581, 1818, 3722, 4701
Hsp92I	GRCGYC	1 cut(s)	80
HspAI	GCGC	4 cut(s)	1073, 1492, 2632, 3383
LguI	GCTCTTC	1 cut(s)	2529
LmnI	GCTCC	8 cut(s)	1066, 1436, 1489, 2034, 2275, 3358, 3516, 3977
Lsp1109I	GCAGC	8 cut(s)	2038, 2383, 2812, 3400, 4466, 4654, 4886, 4920
MaeI	CTAG	6 cut(s)	663, 1830, 2849, 3605, 4274, 4917
MaeII	ACGT	4 cut(s)	581, 1818, 3722, 4701
MbiI	CCGCTC	1 cut(s)	3284
MfeI	CAATTG	3 cut(s)	328, 380, 3537
MflI	RGATCY	6 cut(s)	874, 1553, 2195, 3519, 4152, 4332
MhlI	GDGCHC	1 cut(s)	3363
MlsI	TGGCCA	1 cut(s)	216
MluI	ACGCGT	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	216
MmeI	TCCRAC	9 cut(s)	53, 982, 2031, 2634, 2643, 2839, 3406, 3975, 4650
Mox20I	TGGCCA	1 cut(s)	216
Mph1103I	ATGCAT	1 cut(s)	2454
MroXI	GAANNNNTTC	2 cut(s)	1388, 3458
MscI	TGGCCA	1 cut(s)	216
MslI	CAYNNNNRTG	3 cut(s)	1050, 4083, 4773
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	3023
MspCI	CTTAAG	1 cut(s)	3083
MspI	CCGG	9 cut(s)	113, 140, 164, 509, 1040, 1282, 2958, 3734, 4937
MspR9I	CCNGG	4 cut(s)	1434, 1986, 2070, 3390
MunI	CAATTG	3 cut(s)	328, 380, 3537
Mva1269I	GAATGC	5 cut(s)	499, 1215, 3083, 3343, 3501
MvaI	CCWGG	4 cut(s)	1434, 1986, 2070, 3390
MvnI	CGCG	2 cut(s)	224, 3111
NcoI	CCATGG	1 cut(s)	2906
NlaIV	GGNNCC	4 cut(s)	27, 174, 2277, 3512
NmeAIII	GCCGAG	2 cut(s)	377, 3487
NmuCI	GTSAC	7 cut(s)	784, 983, 1583, 2207, 2916, 3490, 4144
NruI	TCGCGA	1 cut(s)	3111
NsbI	TGCGCA	3 cut(s)	1074, 2633, 3384
NsiI	ATGCAT	1 cut(s)	2454
NspI	RCATGY	9 cut(s)	201, 213, 1073, 1240, 1281, 1696, 1959, 2466, 3567
NspV	TTCGAA	4 cut(s)	343, 503, 1523, 3746
PaeI	GCATGC	3 cut(s)	1073, 1281, 1696
PaeR7I	CTCGAG	1 cut(s)	2922
PciI	ACATGT	4 cut(s)	197, 209, 2462, 3563
PciSI	GCTCTTC	1 cut(s)	2529
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PctI	GAATGC	5 cut(s)	499, 1215, 3083, 3343, 3501
PdmI	GAANNNNTTC	2 cut(s)	1388, 3458
PfeI	GAWTC	9 cut(s)	604, 725, 1055, 1924, 2258, 2645, 3070, 3869, 4519
PflFI	GACNNNGTC	1 cut(s)	34
PflMI	CCANNNNNTGG	1 cut(s)	970
PfoI	TCCNGGA	1 cut(s)	1432
PinAI	ACCGGT	1 cut(s)	2957
PkrI	GCNGC	9 cut(s)	415, 2028, 2398, 2827, 3415, 4481, 4669, 4876, 4935
Ppu21I	YACGTR	1 cut(s)	1819
PpuMI	RGGWCCY	4 cut(s)	173, 698, 3311, 4920
PscI	ACATGT	4 cut(s)	197, 209, 2462, 3563
PshBI	ATTAAT	1 cut(s)	1188
Psp1406I	AACGTT	1 cut(s)	4701
Psp5II	RGGWCCY	4 cut(s)	173, 698, 3311, 4920
Psp6I	CCWGG	4 cut(s)	1432, 1984, 2068, 3388
PspEI	GGTNACC	2 cut(s)	2207, 2916
PspFI	CCCAGC	2 cut(s)	3470, 3924
PspGI	CCWGG	4 cut(s)	1432, 1984, 2068, 3388
PspN4I	GGNNCC	4 cut(s)	27, 174, 2277, 3512
PspPI	GGNCC	7 cut(s)	173, 698, 1861, 2362, 3311, 3685, 4920
PspPPI	RGGWCCY	4 cut(s)	173, 698, 3311, 4920
PspXI	VCTCGAGB	1 cut(s)	2922
PstI	CTGCAG	1 cut(s)	2401
PstNI	CAGNNNCTG	3 cut(s)	1252, 1933, 3314
PsuI	RGATCY	6 cut(s)	874, 1553, 2195, 3519, 4152, 4332
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	3023
RruI	TCGCGA	1 cut(s)	3111
RsaI	GTAC	6 cut(s)	1017, 1115, 1578, 1714, 4024, 4951
RsaNI	GTAC	6 cut(s)	1016, 1114, 1577, 1713, 4023, 4950
RseI	CAYNNNNRTG	3 cut(s)	1050, 4083, 4773
SapI	GCTCTTC	1 cut(s)	2529
SatI	GCNGC	9 cut(s)	414, 2027, 2397, 2826, 3414, 4480, 4668, 4875, 4934
Sau96I	GGNCC	7 cut(s)	173, 698, 1861, 2362, 3311, 3685, 4920
ScrFI	CCNGG	4 cut(s)	1434, 1986, 2070, 3390
SduI	GDGCHC	1 cut(s)	3363
SfcI	CTRYAG	2 cut(s)	2181, 2397
Sfr274I	CTCGAG	1 cut(s)	2922
SfuI	TTCGAA	4 cut(s)	343, 503, 1523, 3746
SgrAI	CRCCGGYG	1 cut(s)	139
SinI	GGWCC	7 cut(s)	173, 698, 1861, 2362, 3311, 3685, 4920
SlaI	CTCGAG	1 cut(s)	2922
SmiMI	CAYNNNNRTG	3 cut(s)	1050, 4083, 4773
SmlI	CTYRAG	5 cut(s)	458, 789, 2922, 3083, 3713
SmoI	CTYRAG	5 cut(s)	458, 789, 2922, 3083, 3713
SnaBI	TACGTA	1 cut(s)	1819
SpeI	ACTAGT	1 cut(s)	1829
SphI	GCATGC	3 cut(s)	1073, 1281, 1696
SsiI	CCGC	7 cut(s)	47, 413, 468, 1483, 3282, 3587, 4811
SspI	AATATT	3 cut(s)	3664, 4426, 4732
SspMI	CTAG	6 cut(s)	663, 1830, 2849, 3605, 4274, 4917
StyD4I	CCNGG	4 cut(s)	1432, 1984, 2068, 3388
StyI	CCWWGG	4 cut(s)	235, 964, 2906, 4314
TaaI	ACNGT	8 cut(s)	709, 1081, 2171, 2437, 2727, 3106, 3631, 3968
TaiI	ACGT	4 cut(s)	584, 1821, 3725, 4704
TatI	WGTACW	2 cut(s)	1576, 1712
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	9 cut(s)	604, 725, 1055, 1924, 2258, 2645, 3070, 3869, 4519
TscAI	CASTG	8 cut(s)	1166, 2061, 2993, 3109, 3879, 3973, 4270, 4752
TseFI	GTSAC	7 cut(s)	784, 983, 1583, 2207, 2916, 3490, 4144
TseI	GCWGC	8 cut(s)	2026, 2396, 2825, 3413, 4479, 4667, 4874, 4933
Tsp45I	GTSAC	7 cut(s)	784, 983, 1583, 2207, 2916, 3490, 4144
TspGWI	ACGGA	4 cut(s)	47, 1368, 2546, 4671
TspRI	CASTG	8 cut(s)	1166, 2061, 2993, 3109, 3879, 3973, 4270, 4752
Tth111I	GACNNNGTC	1 cut(s)	34
Van91I	CCANNNNNTGG	1 cut(s)	970
Vha464I	CTTAAG	1 cut(s)	3083
VpaK11BI	GGWCC	7 cut(s)	173, 698, 1861, 2362, 3311, 3685, 4920
VspI	ATTAAT	1 cut(s)	1188
XceI	RCATGY	9 cut(s)	201, 213, 1073, 1240, 1281, 1696, 1959, 2466, 3567
XcmI	CCANNNNNNNNNTGG	2 cut(s)	242, 2061
XhoI	CTCGAG	1 cut(s)	2922
XmiI	GTMKAC	1 cut(s)	4817
XmnI	GAANNNNTTC	2 cut(s)	1388, 3458
XspI	CTAG	6 cut(s)	663, 1830, 2849, 3605, 4274, 4917
Zsp2I	ATGCAT	1 cut(s)	2454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.