DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G57660 AT3G57660 |
| fragaria_vesca | FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g35030 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 |
| malus_domestica | MD12G1066600.v1.1 MD14G1066700.v1.1 |
| prunus_persica | Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 |
| pyrus_communis | pycom12g05800 pycom14g05430 |
| rosa_chinensis | RchiOBHm_Chr3g0481021 |
| rosa_laevigata | RLG00000023431 |
| rosa_multiflora | Rmu_sc0002927.1_g000058 |
| rosa_roxburghii | Rroxscaffold_6G00400730 |
| rosa_rugosa | Rorug03G0189100 |
| rosa_samantha | Rh3AG240000 Rh3BG275100 Rh3CG270600 Rh3DG266500 |
| rosa_wichuraiana | Rw0G008430 Rw3G021430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 267, 3765 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3137 |
| AatII | GACGTC | 2 cut(s) | 399, 2748 |
| AbsI | CCTCGAGG | 1 cut(s) | 4981 |
| Acc36I | ACCTGC | 3 cut(s) | 908, 3090, 4287 |
| Acc65I | GGTACC | 1 cut(s) | 3078 |
| AccB1I | GGYRCC | 4 cut(s) | 2896, 3078, 3090, 4803 |
| AccII | CGCG | 2 cut(s) | 217, 2355 |
| AciI | CCGC | 6 cut(s) | 195, 1178, 1824, 2111, 2355, 4734 |
| AclI | AACGTT | 1 cut(s) | 4767 |
| AcoI | YGGCCR | 2 cut(s) | 135, 2838 |
| AcsI | RAATTY | 9 cut(s) | 965, 1311, 1761, 1910, 2180, 2657, 3221, 3263, 4424 |
| AcuI | CTGAAG | 3 cut(s) | 491, 3297, 3722 |
| AcvI | CACGTG | 1 cut(s) | 2147 |
| AcyI | GRCGYC | 3 cut(s) | 26, 396, 2745 |
| AdeI | CACNNNGTG | 1 cut(s) | 434 |
| AfaI | GTAC | 7 cut(s) | 948, 1124, 1139, 1705, 1709, 3080, 4645 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 137, 554, 611, 689, 983, 1823, 2700, 2820, 4411 |
| AflIII | ACRYGT | 5 cut(s) | 200, 311, 349, 2495, 3617 |
| AjnI | CCWGG | 6 cut(s) | 672, 1183, 1414, 3231, 3442, 4736 |
| AleI | CACNNNNGTG | 1 cut(s) | 4839 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1205, 1237 |
| Alw21I | GWGCWC | 3 cut(s) | 2415, 3897, 4351 |
| Alw26I | GTCTC | 5 cut(s) | 935, 1453, 3953, 4269, 4907 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2120, 2429 |
| Ama87I | CYCGRG | 4 cut(s) | 226, 1767, 4837, 4981 |
| AoxI | GGCC | 5 cut(s) | 135, 163, 1216, 2838, 2999 |
| ApoI | RAATTY | 9 cut(s) | 965, 1311, 1761, 1910, 2180, 2657, 3221, 3263, 4424 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4530, 4562 |
| AseI | ATTAAT | 1 cut(s) | 2330 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 3263, 3512, 4400 |
| Asp718I | GGTACC | 1 cut(s) | 3078 |
| AspLEI | GCGC | 3 cut(s) | 1645, 1902, 2355 |
| AspS9I | GGNCC | 6 cut(s) | 164, 680, 1400, 1852, 2395, 4414 |
| AsuC2I | CCSGG | 3 cut(s) | 183, 227, 228 |
| AvaI | CYCGRG | 4 cut(s) | 226, 1767, 4837, 4981 |
| AvaII | GGWCC | 5 cut(s) | 680, 1400, 1852, 2395, 4414 |
| AxyI | CCTNAGG | 1 cut(s) | 3003 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3042, 3075 |
| BalI | TGGCCA | 1 cut(s) | 2840 |
| BamHI | GGATCC | 2 cut(s) | 1180, 4564 |
| BanI | GGYRCC | 4 cut(s) | 2896, 3078, 3090, 4803 |
| BanII | GRGCYC | 2 cut(s) | 2415, 4351 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2181, 2213, 3864, 3896 |
| BbrPI | CACGTG | 1 cut(s) | 2147 |
| BbsI | GAAGAC | 4 cut(s) | 2740, 2987, 3557, 4011 |
| Bbv12I | GWGCWC | 3 cut(s) | 2415, 3897, 4351 |
| BbvCI | CCTCAGC | 1 cut(s) | 4044 |
| BceAI | ACGGC | 3 cut(s) | 39, 3069, 3741 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1634, 1668 |
| BciT130I | CCWGG | 6 cut(s) | 674, 1185, 1416, 3233, 3444, 4738 |
| BciVI | GTATCC | 1 cut(s) | 1882 |
| BcnI | CCSGG | 3 cut(s) | 183, 227, 228 |
| BcoDI | GTCTC | 5 cut(s) | 935, 1453, 3953, 4269, 4907 |
| BfaI | CTAG | 8 cut(s) | 432, 1332, 2100, 2630, 2882, 3429, 3662, 3845 |
| BfmI | CTRYAG | 4 cut(s) | 2121, 2198, 2430, 4619 |
| BfuAI | ACCTGC | 3 cut(s) | 908, 3090, 4287 |
| BfuI | GTATCC | 1 cut(s) | 1882 |
| BglII | AGATCT | 4 cut(s) | 808, 2626, 4138, 4496 |
| BlpI | GCTNAGC | 3 cut(s) | 3303, 3654, 4464 |
| Bme1390I | CCNGG | 9 cut(s) | 183, 227, 228, 674, 1185, 1416, 3233, 3444, 4738 |
| Bme18I | GGWCC | 5 cut(s) | 680, 1400, 1852, 2395, 4414 |
| BmeT110I | CYCGRG | 4 cut(s) | 226, 1767, 4837, 4981 |
| BmgT120I | GGNCC | 6 cut(s) | 164, 680, 1400, 1852, 2395, 4414 |
| BmrFI | CCNGG | 9 cut(s) | 183, 227, 228, 674, 1185, 1416, 3233, 3444, 4738 |
| BmrI | ACTGGG | 1 cut(s) | 1626 |
| BmuI | ACTGGG | 1 cut(s) | 1626 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3608 |
| BpiI | GAAGAC | 4 cut(s) | 2740, 2987, 3557, 4011 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 857, 889, 1342, 1374 |
| BpmI | CTGGAG | 5 cut(s) | 1437, 2982, 3465, 4293, 4650 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3792, 4044 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 3303, 3654, 4464 |
| BpuEI | CTTGAG | 3 cut(s) | 1223, 3128, 3305 |
| BpuMI | CCSGG | 3 cut(s) | 183, 227, 228 |
| Bsa29I | ATCGAT | 1 cut(s) | 1110 |
| BsaAI | YACGTR | 2 cut(s) | 1707, 2147 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1179, 4137 |
| BsaHI | GRCGYC | 3 cut(s) | 26, 396, 2745 |
| BsaI | GGTCTC | 1 cut(s) | 4269 |
| BsaWI | WCCGGW | 2 cut(s) | 1467, 3607 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 509, 539, 2717, 2747, 3438, 3468, 4143, 4173 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 137, 554, 611, 689, 983, 1823, 2700, 2820, 4411 |
| Bse118I | RCCGGY | 1 cut(s) | 137 |
| Bse21I | CCTNAGG | 1 cut(s) | 3003 |
| Bse3DI | GCAATG | 3 cut(s) | 3019, 3297, 3623 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1179, 4137 |
| BseBI | CCWGG | 6 cut(s) | 674, 1185, 1416, 3233, 3444, 4738 |
| BseCI | ATCGAT | 1 cut(s) | 1110 |
| BseJI | GATNNNNATC | 2 cut(s) | 1179, 4137 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 137, 554, 611, 689, 983, 1823, 2700, 2820, 4411 |
| BseMI | GCAATG | 3 cut(s) | 3019, 3297, 3623 |
| BseRI | GAGGAG | 2 cut(s) | 80, 4199 |
| BseYI | CCCAGC | 1 cut(s) | 1902 |
| BsgI | GTGCAG | 3 cut(s) | 1058, 2426, 4044 |
| Bsh1236I | CGCG | 2 cut(s) | 217, 2355 |
| BshFI | GGCC | 5 cut(s) | 137, 165, 1218, 2840, 3001 |
| BshNI | GGYRCC | 4 cut(s) | 2896, 3078, 3090, 4803 |
| BshVI | ATCGAT | 1 cut(s) | 1110 |
| BsiHKAI | GWGCWC | 3 cut(s) | 2415, 3897, 4351 |
| BsiHKCI | CYCGRG | 4 cut(s) | 226, 1767, 4837, 4981 |
| BsiSI | CCGG | 6 cut(s) | 138, 183, 227, 1225, 1468, 3608 |
| BslFI | GGGAC | 3 cut(s) | 693, 866, 1604 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 137, 554, 611, 689, 983, 1823, 2700, 2820, 4411 |
| BsmAI | GTCTC | 5 cut(s) | 935, 1453, 3953, 4269, 4907 |
| BsmBI | CGTCTC | 1 cut(s) | 3953 |
| BsmFI | GGGAC | 3 cut(s) | 693, 866, 1604 |
| BsmI | GAATGC | 1 cut(s) | 1390 |
| BsnI | GGCC | 5 cut(s) | 137, 165, 1218, 2840, 3001 |
| Bso31I | GGTCTC | 1 cut(s) | 4269 |
| BsoBI | CYCGRG | 4 cut(s) | 226, 1767, 4837, 4981 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2415, 3897, 4351 |
| Bsp1407I | TGTACA | 1 cut(s) | 1137 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 3303, 3654, 4464 |
| Bsp19I | CCATGG | 1 cut(s) | 2939 |
| BspACI | CCGC | 6 cut(s) | 195, 1178, 1824, 2111, 2355, 4734 |
| BspANI | GGCC | 5 cut(s) | 137, 165, 1218, 2840, 3001 |
| BspDI | ATCGAT | 1 cut(s) | 1110 |
| BspFNI | CGCG | 2 cut(s) | 217, 2355 |
| BspHI | TCATGA | 1 cut(s) | 3612 |
| BspMAI | CTGCAG | 2 cut(s) | 2434, 4623 |
| BspMI | ACCTGC | 3 cut(s) | 908, 3090, 4287 |
| BspT107I | GGYRCC | 4 cut(s) | 2896, 3078, 3090, 4803 |
| BspTNI | GGTCTC | 1 cut(s) | 4269 |
| BsrDI | GCAATG | 3 cut(s) | 3019, 3297, 3623 |
| BsrFI | RCCGGY | 1 cut(s) | 137 |
| BsrGI | TGTACA | 1 cut(s) | 1137 |
| BssAI | RCCGGY | 1 cut(s) | 137 |
| BssNI | GRCGYC | 3 cut(s) | 26, 396, 2745 |
| BssT1I | CCWWGG | 6 cut(s) | 898, 981, 2685, 2694, 2939, 4593 |
| Bst2UI | CCWGG | 6 cut(s) | 674, 1185, 1416, 3233, 3444, 4738 |
| Bst6I | CTCTTC | 6 cut(s) | 510, 2169, 2184, 2562, 3523, 4260 |
| BstACI | GRCGYC | 3 cut(s) | 26, 396, 2745 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 573 |
| BstAUI | TGTACA | 1 cut(s) | 1137 |
| BstBAI | YACGTR | 2 cut(s) | 1707, 2147 |
| BstC8I | GCNNGC | 5 cut(s) | 480, 1041, 1518, 4251, 4452 |
| BstDSI | CCRYGG | 3 cut(s) | 132, 1361, 2939 |
| BstEII | GGTNACC | 1 cut(s) | 94 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2698 |
| BstFNI | CGCG | 2 cut(s) | 217, 2355 |
| BstHHI | GCGC | 3 cut(s) | 1645, 1902, 2355 |
| BstMAI | GTCTC | 5 cut(s) | 935, 1453, 3953, 4269, 4907 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 192, 484, 573, 641, 2690, 4460, 4810 |
| BstNI | CCWGG | 6 cut(s) | 674, 1185, 1416, 3233, 3444, 4738 |
| BstNSI | RCATGY | 7 cut(s) | 204, 353, 482, 1649, 2499, 3621, 4706 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3608 |
| BstPI | GGTNACC | 1 cut(s) | 94 |
| BstSCI | CCNGG | 9 cut(s) | 181, 225, 226, 672, 1183, 1414, 3231, 3442, 4736 |
| BstSFI | CTRYAG | 4 cut(s) | 2121, 2198, 2430, 4619 |
| BstSNI | TACGTA | 1 cut(s) | 1707 |
| BstUI | CGCG | 2 cut(s) | 217, 2355 |
| BstV2I | GAAGAC | 4 cut(s) | 2740, 2987, 3557, 4011 |
| BstX2I | RGATCY | 9 cut(s) | 808, 1180, 1282, 1538, 2626, 4138, 4496, 4564, 4986 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 905, 1639, 2946, 3524 |
| BstYI | RGATCY | 9 cut(s) | 808, 1180, 1282, 1538, 2626, 4138, 4496, 4564, 4986 |
| Bsu15I | ATCGAT | 1 cut(s) | 1110 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3003 |
| BsuI | GTATCC | 1 cut(s) | 1882 |
| BsuRI | GGCC | 5 cut(s) | 137, 165, 1218, 2840, 3001 |
| BsuTUI | ATCGAT | 1 cut(s) | 1110 |
| BtgI | CCRYGG | 3 cut(s) | 132, 1361, 2939 |
| BtsI | GCAGTG | 4 cut(s) | 1109, 2076, 2636, 4510 |
| BveI | ACCTGC | 3 cut(s) | 908, 3090, 4287 |
| Cac8I | GCNNGC | 5 cut(s) | 480, 1041, 1518, 4251, 4452 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2120, 2429 |
| CciI | TCATGA | 1 cut(s) | 3612 |
| CfoI | GCGC | 3 cut(s) | 1645, 1902, 2355 |
| Cfr10I | RCCGGY | 1 cut(s) | 137 |
| Cfr13I | GGNCC | 6 cut(s) | 164, 680, 1400, 1852, 2395, 4414 |
| Cfr9I | CCCGGG | 1 cut(s) | 226 |
| ClaI | ATCGAT | 1 cut(s) | 1110 |
| CseI | GACGC | 2 cut(s) | 15, 2039 |
| CsiI | ACCWGGT | 1 cut(s) | 672 |
| Csp6I | GTAC | 7 cut(s) | 947, 1123, 1138, 1704, 1708, 3079, 4644 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3895, 3930 |
| CviQI | GTAC | 7 cut(s) | 947, 1123, 1138, 1704, 1708, 3079, 4644 |
| DraI | TTTAAA | 1 cut(s) | 4423 |
| DraIII | CACNNNGTG | 1 cut(s) | 434 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3137 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3137 |
| EaeI | YGGCCR | 2 cut(s) | 135, 2838 |
| Eam1104I | CTCTTC | 6 cut(s) | 510, 2169, 2184, 2562, 3523, 4260 |
| EarI | CTCTTC | 6 cut(s) | 510, 2169, 2184, 2562, 3523, 4260 |
| EciI | GGCGGA | 1 cut(s) | 2100 |
| Ecl136II | GAGCTC | 2 cut(s) | 2413, 4349 |
| Eco105I | TACGTA | 1 cut(s) | 1707 |
| Eco130I | CCWWGG | 6 cut(s) | 898, 981, 2685, 2694, 2939, 4593 |
| Eco147I | AGGCCT | 1 cut(s) | 1218 |
| Eco24I | GRGCYC | 2 cut(s) | 2415, 4351 |
| Eco31I | GGTCTC | 1 cut(s) | 4269 |
| Eco32I | GATATC | 3 cut(s) | 889, 4788, 4887 |
| Eco47I | GGWCC | 5 cut(s) | 680, 1400, 1852, 2395, 4414 |
| Eco53kI | GAGCTC | 2 cut(s) | 2413, 4349 |
| Eco57I | CTGAAG | 3 cut(s) | 491, 3297, 3722 |
| Eco72I | CACGTG | 1 cut(s) | 2147 |
| Eco81I | CCTNAGG | 1 cut(s) | 3003 |
| Eco88I | CYCGRG | 4 cut(s) | 226, 1767, 4837, 4981 |
| Eco91I | GGTNACC | 1 cut(s) | 94 |
| EcoICRI | GAGCTC | 2 cut(s) | 2413, 4349 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2698 |
| EcoO109I | RGGNCCY | 1 cut(s) | 680 |
| EcoO65I | GGTNACC | 1 cut(s) | 94 |
| EcoRI | GAATTC | 1 cut(s) | 1311 |
| EcoRII | CCWGG | 6 cut(s) | 672, 1183, 1414, 3231, 3442, 4736 |
| EcoRV | GATATC | 3 cut(s) | 889, 4788, 4887 |
| EcoT14I | CCWWGG | 6 cut(s) | 898, 981, 2685, 2694, 2939, 4593 |
| EcoT22I | ATGCAT | 1 cut(s) | 2487 |
| EcoT38I | GRGCYC | 2 cut(s) | 2415, 4351 |
| ErhI | CCWWGG | 6 cut(s) | 898, 981, 2685, 2694, 2939, 4593 |
| Esp3I | CGTCTC | 1 cut(s) | 3953 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1877, 1909, 4653, 4685 |
| FaqI | GGGAC | 3 cut(s) | 693, 866, 1604 |
| FriOI | GRGCYC | 2 cut(s) | 2415, 4351 |
| FspBI | CTAG | 8 cut(s) | 432, 1332, 2100, 2630, 2882, 3429, 3662, 3845 |
| GlaI | GCGC | 3 cut(s) | 1644, 1901, 2354 |
| GsaI | CCCAGC | 1 cut(s) | 1906 |
| GsuI | CTGGAG | 5 cut(s) | 1437, 2982, 3465, 4293, 4650 |
| HaeIII | GGCC | 5 cut(s) | 137, 165, 1218, 2840, 3001 |
| HapII | CCGG | 6 cut(s) | 138, 183, 227, 1225, 1468, 3608 |
| HgaI | GACGC | 2 cut(s) | 15, 2039 |
| HhaI | GCGC | 3 cut(s) | 1645, 1902, 2355 |
| Hin1I | GRCGYC | 3 cut(s) | 26, 396, 2745 |
| Hin6I | GCGC | 3 cut(s) | 1643, 1900, 2353 |
| HinP1I | GCGC | 3 cut(s) | 1643, 1900, 2353 |
| HincII | GTYRAC | 5 cut(s) | 724, 1372, 1396, 3492, 4795 |
| HindII | GTYRAC | 5 cut(s) | 724, 1372, 1396, 3492, 4795 |
| HindIII | AAGCTT | 5 cut(s) | 842, 1776, 3208, 4076, 4083 |
| HpaII | CCGG | 6 cut(s) | 138, 183, 227, 1225, 1468, 3608 |
| Hpy99I | CGWCG | 3 cut(s) | 25, 401, 1953 |
| HpyCH4IV | ACGT | 7 cut(s) | 311, 396, 1706, 2146, 2745, 3719, 4767 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 192, 484, 573, 641, 2690, 4460, 4810 |
| HpySE526I | ACGT | 7 cut(s) | 311, 396, 1706, 2146, 2745, 3719, 4767 |
| Hsp92I | GRCGYC | 3 cut(s) | 26, 396, 2745 |
| HspAI | GCGC | 3 cut(s) | 1643, 1900, 2353 |
| KflI | GGGWCCC | 1 cut(s) | 680 |
| KpnI | GGTACC | 1 cut(s) | 3082 |
| LmnI | GCTCC | 6 cut(s) | 517, 1003, 1418, 2410, 3412, 4319 |
| MabI | ACCWGGT | 1 cut(s) | 672 |
| MaeI | CTAG | 8 cut(s) | 432, 1332, 2100, 2630, 2882, 3429, 3662, 3845 |
| MaeII | ACGT | 7 cut(s) | 311, 396, 1706, 2146, 2745, 3719, 4767 |
| MfeI | CAATTG | 5 cut(s) | 168, 571, 1389, 2642, 4218 |
| MflI | RGATCY | 9 cut(s) | 808, 1180, 1282, 1538, 2626, 4138, 4496, 4564, 4986 |
| MhlI | GDGCHC | 3 cut(s) | 2415, 3897, 4351 |
| MlsI | TGGCCA | 1 cut(s) | 2840 |
| MluNI | TGGCCA | 1 cut(s) | 2840 |
| MlyI | GAGTC | 7 cut(s) | 419, 1070, 2464, 3221, 3598, 4825, 4889 |
| MmeI | TCCRAC | 6 cut(s) | 44, 1104, 2760, 2872, 3849, 4716 |
| Mox20I | TGGCCA | 1 cut(s) | 2840 |
| Mph1103I | ATGCAT | 1 cut(s) | 2487 |
| MroXI | GAANNNNTTC | 3 cut(s) | 3263, 3512, 4400 |
| MscI | TGGCCA | 1 cut(s) | 2840 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1130, 2540, 4839 |
| Msp20I | TGGCCA | 1 cut(s) | 2840 |
| MspA1I | CMGCKG | 1 cut(s) | 1824 |
| MspI | CCGG | 6 cut(s) | 138, 183, 227, 1225, 1468, 3608 |
| MspR9I | CCNGG | 9 cut(s) | 183, 227, 228, 674, 1185, 1416, 3233, 3444, 4738 |
| MunI | CAATTG | 5 cut(s) | 168, 571, 1389, 2642, 4218 |
| Mva1269I | GAATGC | 1 cut(s) | 1390 |
| MvaI | CCWGG | 6 cut(s) | 674, 1185, 1416, 3233, 3444, 4738 |
| MvnI | CGCG | 2 cut(s) | 217, 2355 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 192, 484, 573, 641, 2690, 4460, 4810 |
| NciI | CCSGG | 3 cut(s) | 183, 227, 228 |
| NcoI | CCATGG | 1 cut(s) | 2939 |
| NmeAIII | GCCGAG | 2 cut(s) | 141, 2550 |
| NmuCI | GTSAC | 8 cut(s) | 392, 464, 470, 920, 1574, 3544, 3928, 4532 |
| NsiI | ATGCAT | 1 cut(s) | 2487 |
| NspI | RCATGY | 7 cut(s) | 204, 353, 482, 1649, 2499, 3621, 4706 |
| OliI | CACNNNNGTG | 1 cut(s) | 4839 |
| PaeI | GCATGC | 1 cut(s) | 482 |
| PaeR7I | CTCGAG | 2 cut(s) | 1767, 4981 |
| PagI | TCATGA | 1 cut(s) | 3612 |
| PceI | AGGCCT | 1 cut(s) | 1218 |
| PciI | ACATGT | 4 cut(s) | 200, 349, 2495, 3617 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 1579, 3285, 4889, 4979 |
| PctI | GAATGC | 1 cut(s) | 1390 |
| PdmI | GAANNNNTTC | 3 cut(s) | 3263, 3512, 4400 |
| PfeI | GAWTC | 6 cut(s) | 419, 586, 992, 1846, 2678, 3555 |
| PflFI | GACNNNGTC | 2 cut(s) | 25, 1856 |
| PfoI | TCCNGGA | 2 cut(s) | 1183, 1414 |
| PleI | GAGTC | 7 cut(s) | 419, 1069, 2463, 3221, 3598, 4825, 4888 |
| PmaCI | CACGTG | 1 cut(s) | 2147 |
| PmlI | CACGTG | 1 cut(s) | 2147 |
| PpsI | GAGTC | 7 cut(s) | 419, 1069, 2463, 3221, 3598, 4825, 4888 |
| Ppu21I | YACGTR | 2 cut(s) | 1707, 2147 |
| PpuMI | RGGWCCY | 1 cut(s) | 680 |
| PscI | ACATGT | 4 cut(s) | 200, 349, 2495, 3617 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3608 |
| PshBI | ATTAAT | 1 cut(s) | 2330 |
| PsiI | TTATAA | 2 cut(s) | 267, 3765 |
| Psp124BI | GAGCTC | 2 cut(s) | 2415, 4351 |
| Psp1406I | AACGTT | 1 cut(s) | 4767 |
| Psp5II | RGGWCCY | 1 cut(s) | 680 |
| Psp6I | CCWGG | 6 cut(s) | 672, 1183, 1414, 3231, 3442, 4736 |
| PspCI | CACGTG | 1 cut(s) | 2147 |
| PspEI | GGTNACC | 1 cut(s) | 94 |
| PspFI | CCCAGC | 1 cut(s) | 1902 |
| PspGI | CCWGG | 6 cut(s) | 672, 1183, 1414, 3231, 3442, 4736 |
| PspPI | GGNCC | 6 cut(s) | 164, 680, 1400, 1852, 2395, 4414 |
| PspPPI | RGGWCCY | 1 cut(s) | 680 |
| PspXI | VCTCGAGB | 1 cut(s) | 4981 |
| PstI | CTGCAG | 2 cut(s) | 2434, 4623 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2120, 2429 |
| PsuI | RGATCY | 9 cut(s) | 808, 1180, 1282, 1538, 2626, 4138, 4496, 4564, 4986 |
| PsyI | GACNNNGTC | 2 cut(s) | 25, 1856 |
| RsaI | GTAC | 7 cut(s) | 948, 1124, 1139, 1705, 1709, 3080, 4645 |
| RsaNI | GTAC | 7 cut(s) | 947, 1123, 1138, 1704, 1708, 3079, 4644 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1130, 2540, 4839 |
| SacI | GAGCTC | 2 cut(s) | 2415, 4351 |
| Sau96I | GGNCC | 6 cut(s) | 164, 680, 1400, 1852, 2395, 4414 |
| SchI | GAGTC | 7 cut(s) | 419, 1070, 2464, 3221, 3598, 4825, 4889 |
| ScrFI | CCNGG | 9 cut(s) | 183, 227, 228, 674, 1185, 1416, 3233, 3444, 4738 |
| SduI | GDGCHC | 3 cut(s) | 2415, 3897, 4351 |
| SexAI | ACCWGGT | 1 cut(s) | 672 |
| SfcI | CTRYAG | 4 cut(s) | 2121, 2198, 2430, 4619 |
| Sfr274I | CTCGAG | 2 cut(s) | 1767, 4981 |
| SinI | GGWCC | 5 cut(s) | 680, 1400, 1852, 2395, 4414 |
| SlaI | CTCGAG | 2 cut(s) | 1767, 4981 |
| SmaI | CCCGGG | 1 cut(s) | 228 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1130, 2540, 4839 |
| SmlI | CTYRAG | 5 cut(s) | 1202, 1767, 3107, 3320, 4981 |
| SmoI | CTYRAG | 5 cut(s) | 1202, 1767, 3107, 3320, 4981 |
| SnaBI | TACGTA | 1 cut(s) | 1707 |
| SphI | GCATGC | 1 cut(s) | 482 |
| SseBI | AGGCCT | 1 cut(s) | 1218 |
| SsiI | CCGC | 6 cut(s) | 195, 1178, 1824, 2111, 2355, 4734 |
| SspI | AATATT | 3 cut(s) | 2439, 3973, 4383 |
| SspMI | CTAG | 8 cut(s) | 432, 1332, 2100, 2630, 2882, 3429, 3662, 3845 |
| SstI | GAGCTC | 2 cut(s) | 2415, 4351 |
| StuI | AGGCCT | 1 cut(s) | 1218 |
| StyD4I | CCNGG | 9 cut(s) | 181, 225, 226, 672, 1183, 1414, 3231, 3442, 4736 |
| StyI | CCWWGG | 6 cut(s) | 898, 981, 2685, 2694, 2939, 4593 |
| TaiI | ACGT | 7 cut(s) | 314, 399, 1709, 2149, 2748, 3722, 4770 |
| TaqII | GACCGA | 2 cut(s) | 1254, 1941 |
| TatI | WGTACW | 3 cut(s) | 946, 1122, 1137 |
| TauI | GCSGC | 1 cut(s) | 4736 |
| TfiI | GAWTC | 6 cut(s) | 419, 586, 992, 1846, 2678, 3555 |
| TseFI | GTSAC | 8 cut(s) | 392, 464, 470, 920, 1574, 3544, 3928, 4532 |
| Tsp45I | GTSAC | 8 cut(s) | 392, 464, 470, 920, 1574, 3544, 3928, 4532 |
| TspMI | CCCGGG | 1 cut(s) | 226 |
| Tth111I | GACNNNGTC | 2 cut(s) | 25, 1856 |
| VpaK11BI | GGWCC | 5 cut(s) | 680, 1400, 1852, 2395, 4414 |
| VspI | ATTAAT | 1 cut(s) | 2330 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2698 |
| XapI | RAATTY | 9 cut(s) | 965, 1311, 1761, 1910, 2180, 2657, 3221, 3263, 4424 |
| XceI | RCATGY | 7 cut(s) | 204, 353, 482, 1649, 2499, 3621, 4706 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2052 |
| XhoI | CTCGAG | 2 cut(s) | 1767, 4981 |
| XmaI | CCCGGG | 1 cut(s) | 226 |
| XmnI | GAANNNNTTC | 3 cut(s) | 3263, 3512, 4400 |
| XspI | CTAG | 8 cut(s) | 432, 1332, 2100, 2630, 2882, 3429, 3662, 3845 |
| ZraI | GACGTC | 2 cut(s) | 397, 2746 |
| Zsp2I | ATGCAT | 1 cut(s) | 2487 |