Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003661

Physical Location & Seq

Genomic Coordinates Reverse (-)

17077734 .. 17091046

Gene Structure 13313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23210.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5025 bp

ATGGCCTCAGCTCAAACCTTAGAGGTTGCGACGGAGTCGGTGACGGCAGTCACGTTCAGCTTCTTCACCGACGAAGAGGCGCGGAAGCAGAGCGTTGTGAAGATTACAAAACCGGATTTGGTTGACGAATTAGGGACGCCGGTGCCAGGTGGGCTTTACGACCCTGCGATGGGCCCTCTCGACGACAGAAGCGACACGCTTTGCAAGACATGTGGTCAGAGGTCGGTCAATTGCCGGGGTCATTTTGGTCACATTGACGTTGTTTTGCCCGTCTATAATCCCTTGCTGTTCAACGTTCTTTACAAACTTCTACAAAGAACCTGTCTCGGATGTTTCCATTTTCGAACAAGCAAAGAGCTGGTTGAAAAATGTGTATCCAAATTGGAACTGGTGATGAAAGGTGATGTTGTTGGTGCAAAAAGATTAGACTCTGACACGCCTAATGAATACTCATATCTTGACGAGGACGGGGAAGGAAATAATATTGACAGAGACAAGCATTCAAAGCCGGAAAGATGGACTTCTCTTCAGTTCACAGAAGCAATGTCTATTTTGGAAGATTCTTTGGAGACACAACAAAAGTGCAAGAACTGCAAATTTAAGAATCCTAAAATCACTAAACCGACTTTTGGTTGGTTACAGATGACTGGTGCGGGCAATGCTAGAGAAAATGTTATCAGAGGATGCAAGCTGGTAGGACCTTTAAGTGTTCAAGACGAGGGTGAATCTTGTGGTGATGATGTTGATGCAGGCATATCTGATATATCTTGTGCATCCTCTCTTGTGACTCAAGATACTGCAACGAAGAGTAAAGGACATGAGAGCAAAGAACTCAGTGAGTTCTCTAAGCTGAAAATAGCTTTATCCGGAGATCTAAAACCAACCGAGGTTAAAGGAATAATGAGGCTTTTGTGGACAAATGAGGTTCCACTGTGCTCTTTTCTTAGTGACATCCAATGCCAAGGGGTTGAAAGAAAGGGAGGTTACTCTATGTTTTTCTTAGAGACTGTTCTTGTACCACCAATCAAATTTCGTCCTGCAGCCCATAGTGGTGATTCTGTGATGGAGCATCCTCAAACTGTTTCATTGAGTAAGGTGGTTCAGACAAATACTTACTTGAAAGACGCTCTTAGTCAGAACAAACAATCACAGACAATTCGGCGTTGGAGGGAACTTCAAGATTGTATAAATCTAATGTTCGATAGCAAAACTGTTTCGGGTCAAGGTAAAACAGATGCTTCTGGAATATGTCAGTTGCTGGAGAAGAAGGAAGGCGTGTTCCGCCAGAAAATGATGGGAAAGAGGGTTAATCATGCATGCCGGTCGGTTATATCCCCTGACCCCTATTTAGCTGTTAATGAGATTGGAATTCCTCCAGTCTTTGCATTGACATTAACATATCCTGAGAGAGTTACTCCCTGGAATGTTTTCAAGTTAAGGAATGCTATTGTCAATGGTTCTGAAATCCATCCTGGAGCTACACACTATATTGATAAAAAATCTATCAAGTTGCCACAAAAGCGGAGAGAGCGCATTTTATTGTCAAGAAAGTTACCTTCTTCAAAAGGGGCAGGGACACAACATGGGAAGGGATCTGACTATGAAAACAAAATGGTACTCCGTCACTTGCAAGATGGAGACATTGTTCTTGTTAATCGCCAGCCTACACTTCACAAACCCAGTATAATGGCTCACATAGTTCGTGTATTGAAGGGGGAGAAAACATTACGCATGCACTATGCAAATTGCAGTACATACAATGCTGATTTTGATGGTGATGAAATGAATGTTCATTTGCCACAAGATGAAATTTCTCGCGCTGAAGCTTACAATTTGGTGAACGCAAATAATCAATACGTAAAGCCCACTAGTGGTGATCCCATTCGAGCCTTAATTCAGGACCATGTTATAAGTGCTGTCCTCCTTACAAAAAAGGACACCTTTCTCCGCTCGGATGAATTTAATCAGCTTCTTTATAGTTCATCTGTTTCAGCATGTGGTTCAGACACTTTCTCTGGCAAGCCAGGTCAAAAGGTTTTAACATCCAACTCTGAAGATGAAATGCAGCCCCTTCTTCCTGCAATTTGGAAACCAGTGCGTCTGTGGACGGGAAAGCAGGTCATCACTACCTTGCTAAATCATATTACAAGTGGTTCTCCACCACTTACTGTTGAAAAGGAAGCAAAACTCCCATGTGGGTTTTTCAACTGCAAGACTCTTGAAGAAGAAGAGGAATTTGATAAAGCTCAACGAGCAAAAGAAAAGAAGTCAAGAAAAGTAGCTTTTAAAGATGATTCAAAAGGAAAGGAGGAGCCAGATGAGAGCAAGTTGTTAATCTATCGAAATAACTTGGTGCGTGGTGTGATCGACAAAAACCAGTTTGGTGACTATGGTTTGGTCCATAATGTGCAGGAACTCTATGGTTCGGAAGCTGCAGGAAAATTGCTTTCTGTTTTTAGTCGTTTATATACTGTTTATTTACAGATGCATGGGTTCACTTGTGGGGTTGACGATCTTTTGCTAATACAAAGCAAAGACAAAAAAATGAAGGAACAACTCGAAAGTTGTGAAGAGCTTGGTGAAATAGTTTTCCGTGAGTTTATTGGGGTCAGACAAAATGAAAGAAAAGATCCAGTGATATTGCAATCGGATATTGAAGAATTTTTACGCAATAATGGAGAATCTGTGTCGGAAATGTTGGACAGGAAAATGACGAGTGAACTTAATAAAAAAATCTCCAAATCTGATGTCTTCAAACAATTGTTTCAGAAAGGGTTATCAAAACCATCTGTTAAGAATTATATGTATCTTATGACAAGCTCTGGGGCTAAAGGTGGTGTGGCAAATCTCCAACAAATTGCTTCATACTTGGGTCAGCAAGAGCTAGAAGGTAAACGAGTCCCCCAAATGGTTTCTGGAAAGACCTTACCATGCTTCCCTCCATGGGATTGGTCACCTCGAGCTGGAGGTTTTATTATTGATCGCTTTCTTACCGGTCTTCATCCTCAGGAGTATTATTTTCACTGCATGGCTGGCCGTGAAGGGCTGGTTGATACAGCTGTCAAAACTTCTCGAAGTGGATACTTGCAAAGATGCCTAATAAAAAATCTCGAATGCCTTAAGATTTCTTATGATCATACTGTCCGTGATGCTGATGGTTCAATTATTCAATTCCATTATGGGGAGGATGGTATTGATGTCCATTTGACAAGCTTTATTAAGAAGTTTGAAAAACTGGCAAATAATAAAGAAATGTTTGACAAGAGATTTGGTCGTCAAATTGATAAACTCAATCCCTATATTGATGAGTTGCCTCCCGCTCTCAAAAGAAAAGCAGAGATGTCAGTTCCTAATTTGTCTTTGAAGGAGAAAAATGCCACCTTGAAGTTAATGGAGCACAAATATCTCAGCAGTCTTGCGCAACCTGGTGAACCAGTTGGTATTCTTGCTGCTCAGTCCGTAGGAGAACCATCAACACAAATGACTCTGAATACCTTCCATAATGCTGGACGAAGTGAAATGAATGTGACTCTCGGAATTCCACGGCTCCAAGAGATCTTGATGACTGCTTCAAATGATATCAAGACTCCAGTCATGACATGTCCGTTGATAAACGAGAAAACGGACTATGCTAAAAGTTTAGCTGATAGATTGAAGAGGATCACTGTGGCAGACATAATAGAGAGCATGAAAGTAAACATTACACCATTTACACATAAGGACCGTCAAACTTGCCGTATTTATGAGCTTGAGATGACACTTTTTGTACCAGAACATCTTTCAAAATTTTCAGAAGATTGGGAGGAACTCCTAGTGGTTAAATTTGTCAGGGCTTTGGAGGATGCCATACAGAATCATCTGGTTTTGCTCTCTAAAATTAGTGGTATAAAAGATATAAAGGCTGATTCACTGCCGAAGGTATCAATGGAGGCAGATGAAGATGTCTCTTGTAAAATTTCGCAGCATGGGGGAGAAGATGATGATGATGGCGATATAGATGACAGTGGTGAAGGTGCTGAGGATTTTGGGTTGGATGCACAAAAACGAAAGCGGCAGGGTACAGATGAGATGGAGTATGAAGGTGACTGTGAGGATGAAGTGAGTGAAGGTCATCATTCTGATAGATTTGAAAGCGAAATTGATAAGGGGGAAAGTGATGTGGAAATCGATAAGGATGGTGTGATGGGGATCTCAGATGCAAATGATGAAATGCATGAAAGTCCCTCAACTGGAGATACATCTAAGCCACAATCGAAGGGAAAAAAGACCAAATCAAGGGAGAAAATAAAAAAGAAGACCCGAGCAAAGCTAGTAAGAAAGGAGTATGACAGGGCAACTTTTGTGTCAGCCAAGGGGTTTCACTTTGAGATCCATTTTAAATTTACCAATGAACCTCATATTCTTTTGGATCAGATTGCTCGGAAGACAGCCCGAAATGTATATGTCAAAAGCTCTGGCAATATTTTGGATTGTAAAGATATTGATATTTATGGTAATGAAGATCAAGTTTTCTGCTCCTGGAATGATCCCAGAAATAAATTACCGGGTGAAAAGAATCCCACAAAAGAAGAAAAGAAGATGCGAGCCGTGCAGACAGCAGGCGTGGATTTTGCTACACTATGGAAACTGCAAGATGATCTTGATGTCAACTATATATATTCCAACAACATTCATGCTATGCTTAACACTTATGGAGTGGAAGCCGCCAGAGAAACTATCATCAAAGAAATAAGCAACGTTTTCAAGGTTTATGGGATATCTGTCAATATCAGACACCTTTCACTCATAGCTGATTACATGACTCATAGTGGTGGGTATCGTCCAATGAACAGATTTGGAGGTATAGCAGAGTCTACATCGCCAATCAATAAAATGTCATTTGAGACGGCTTCCAAGTTCATTCGAGAAGCAGCATATCATGGGGAGACTGATGACCTGGAAACCCCATCTGCTAGGATCTGTCTTGGGCTGCCTGTGAAAGTTGGTACGGGTTCTTTTGATTTGATGCAAAAGATGGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005911 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

1675

Amino Acids

187.99

Weight (kDa)

6.31

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	49 - 299	2.3e-09	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	302 - 483	2.3e-58	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	487 - 708	1.8e-29	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	760 - 861	3e-20	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	868 - 1486	3.4e-85	RNA polymerase Rpb1, domain 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57660 AT3G57660
fragaria_vesca	FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g35030 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210
malus_domestica	MD12G1066600.v1.1 MD14G1066700.v1.1
prunus_persica	Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1
pyrus_communis	pycom12g05800 pycom14g05430
rosa_chinensis	RchiOBHm_Chr3g0481021
rosa_laevigata	RLG00000023431
rosa_multiflora	Rmu_sc0002927.1_g000058
rosa_roxburghii	Rroxscaffold_6G00400730
rosa_rugosa	Rorug03G0189100
rosa_samantha	Rh3AG240000 Rh3BG275100 Rh3CG270600 Rh3DG266500
rosa_wichuraiana	Rw0G008430 Rw3G021430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1910
Acc16I	TGCGCA	1 cut(s)	3420
Acc36I	ACCTGC	1 cut(s)	2107
AccB1I	GGYRCC	1 cut(s)	142
AccBSI	CCGCTC	2 cut(s)	1950, 3320
AccI	GTMKAC	1 cut(s)	4853
AccII	CGCG	2 cut(s)	82, 1818
AccIII	TCCGGA	1 cut(s)	866
AciI	CCGC	8 cut(s)	82, 653, 1282, 1522, 1948, 3318, 4051, 4704
AclI	AACGTT	2 cut(s)	294, 4737
AclWI	GGATC	9 cut(s)	1600, 1871, 2624, 3668, 4196, 4363, 4416, 4520, 4964
AcoI	YGGCCR	1 cut(s)	3034
AcuI	CTGAAG	3 cut(s)	512, 1842, 2073
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	6 cut(s)	1017, 1617, 1753, 3768, 4060, 4987
AflII	CTTAAG	1 cut(s)	3119
AflIII	ACRYGT	2 cut(s)	209, 3599
AgeI	ACCGGT	1 cut(s)	2993
AhdI	GACNNNNNGTC	1 cut(s)	213
AhlI	ACTAGT	1 cut(s)	1868
AjnI	CCWGG	7 cut(s)	145, 1418, 1471, 2023, 3424, 4517, 4935
AloI	GAACNNNNNNTCC	4 cut(s)	1262, 1294, 1629, 1661
Alw21I	GWGCWC	2 cut(s)	938, 3399
Alw26I	GTCTC	8 cut(s)	329, 486, 563, 998, 1632, 3949, 4877, 4919
AlwI	GGATC	9 cut(s)	1600, 1871, 2624, 3668, 4196, 4363, 4416, 4520, 4964
AlwNI	CAGNNNCTG	1 cut(s)	1258
Ama87I	CYCGRG	2 cut(s)	2958, 4299
Aor13HI	TCCGGA	1 cut(s)	866
AoxI	GGCC	3 cut(s)	3, 172, 3034
ApaI	GGGCCC	1 cut(s)	176
ApeKI	GCWGC	7 cut(s)	1040, 2065, 2432, 3449, 3961, 4910, 4969
ArsI	GACNNNNNNTTYG	6 cut(s)	307, 339, 2733, 2765, 3251, 3283
AsiGI	ACCGGT	1 cut(s)	2993
Asp700I	GAANNNNTTC	2 cut(s)	1427, 3494
AspLEI	GCGC	4 cut(s)	82, 1533, 1820, 3421
AspS9I	GGNCC	6 cut(s)	172, 173, 698, 1900, 2398, 3721
AsuC2I	CCSGG	2 cut(s)	236, 4545
AsuII	TTCGAA	1 cut(s)	343
AvaI	CYCGRG	2 cut(s)	2958, 4299
AvaII	GGWCC	4 cut(s)	698, 1900, 2398, 3721
AxyI	CCTNAGG	1 cut(s)	3006
BaeGI	GKGCMC	1 cut(s)	176
BaeI	ACNNNNGTAYC	2 cut(s)	3045, 3078
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	176
BarI	GAAGNNNNNNTAC	2 cut(s)	2649, 2681
BbsI	GAAGAC	4 cut(s)	2743, 2990, 4301, 4430
Bbv12I	GWGCWC	2 cut(s)	938, 3399
BbvCI	CCTCAGC	2 cut(s)	7, 4017
BbvI	GCAGC	7 cut(s)	1052, 2077, 2419, 3436, 3973, 4922, 4956
BceAI	ACGGC	6 cut(s)	60, 3021, 3560, 3720, 4571, 4902
BcgI	CGANNNNNNTGC	2 cut(s)	1305, 1339
BciT130I	CCWGG	7 cut(s)	147, 1420, 1473, 2025, 3426, 4519, 4937
BciVI	GTATCC	2 cut(s)	385, 3074
BclI	TGATCA	1 cut(s)	3133
BcnI	CCSGG	2 cut(s)	236, 4545
BcoDI	GTCTC	8 cut(s)	329, 486, 563, 998, 1632, 3949, 4877, 4919
BcuI	ACTAGT	1 cut(s)	1868
BfaI	CTAG	6 cut(s)	663, 1869, 2885, 3812, 4310, 4953
BfmI	CTRYAG	2 cut(s)	1038, 2433
BfrI	CTTAAG	1 cut(s)	3119
BfuAI	ACCTGC	1 cut(s)	2107
BfuI	GTATCC	2 cut(s)	385, 3074
BglI	GCCNNNNNGGC	1 cut(s)	151
BglII	AGATCT	2 cut(s)	871, 3555
BisI	GCNGC	9 cut(s)	1041, 2066, 2433, 3450, 3962, 4052, 4704, 4911, 4970
BlsI	GCNGC	9 cut(s)	1042, 2067, 2434, 3451, 3963, 4053, 4705, 4912, 4971
Bme1390I	CCNGG	9 cut(s)	147, 236, 1420, 1473, 2025, 3426, 4519, 4545, 4937
Bme18I	GGWCC	4 cut(s)	698, 1900, 2398, 3721
BmeRI	GACNNNNNGTC	1 cut(s)	213
BmeT110I	CYCGRG	2 cut(s)	2958, 4299
BmgT120I	GGNCC	6 cut(s)	172, 173, 698, 1900, 2398, 3721
BmiI	GGNNCC	5 cut(s)	144, 174, 927, 2313, 3548
BmrFI	CCNGG	9 cut(s)	147, 236, 1420, 1473, 2025, 3426, 4519, 4545, 4937
BmrI	ACTGGG	1 cut(s)	1674
BmuI	ACTGGG	1 cut(s)	1674
BoxI	GACNNNNGTC	2 cut(s)	47, 3590
BpiI	GAAGAC	4 cut(s)	2743, 2990, 4301, 4430
BplI	GAGNNNNNCTC	2 cut(s)	1399, 1431
BpmI	CTGGAG	6 cut(s)	1280, 1359, 1494, 2985, 3573, 4251
Bpu10I	CCTNAGC	2 cut(s)	7, 4017
Bpu14I	TTCGAA	1 cut(s)	343
BpuEI	CTTGAG	2 cut(s)	774, 3770
BpuMI	CCSGG	2 cut(s)	236, 4545
Bsa29I	ATCGAT	1 cut(s)	4167
BsaAI	YACGTR	1 cut(s)	1858
BsaBI	GATNNNNATC	1 cut(s)	4187
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	7 cut(s)	235, 885, 961, 1418, 2942, 3542, 4350
BsaWI	WCCGGW	3 cut(s)	112, 866, 2993
BsaXI	ACNNNNNCTCC	4 cut(s)	1629, 1659, 2670, 2700
Bse118I	RCCGGY	3 cut(s)	139, 1320, 2993
Bse21I	CCTNAGG	1 cut(s)	3006
Bse3DI	GCAATG	2 cut(s)	549, 664
Bse8I	GATNNNNATC	1 cut(s)	4187
BseAI	TCCGGA	1 cut(s)	866
BseBI	CCWGG	7 cut(s)	147, 1420, 1473, 2025, 3426, 4519, 4937
BseCI	ATCGAT	1 cut(s)	4167
BseDI	CCNNGG	7 cut(s)	235, 885, 961, 1418, 2942, 3542, 4350
BseJI	GATNNNNATC	1 cut(s)	4187
BseMI	GCAATG	2 cut(s)	549, 664
BseMII	CTCAG	8 cut(s)	21, 847, 1395, 3020, 3421, 3467, 4008, 4206
BseRI	GAGGAG	1 cut(s)	2324
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	7 cut(s)	1052, 2077, 2419, 3436, 3973, 4922, 4956
BsgI	GTGCAG	2 cut(s)	2429, 4610
Bsh1236I	CGCG	2 cut(s)	82, 1818
Bsh1285I	CGRYCG	1 cut(s)	1325
BshFI	GGCC	3 cut(s)	5, 174, 3036
BshNI	GGYRCC	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	2993
BshVI	ATCGAT	1 cut(s)	4167
BsiEI	CGRYCG	1 cut(s)	1325
BsiHKAI	GWGCWC	2 cut(s)	938, 3399
BsiHKCI	CYCGRG	2 cut(s)	2958, 4299
BsiSI	CCGG	8 cut(s)	113, 140, 235, 509, 867, 1321, 2994, 4544
BslFI	GGGAC	4 cut(s)	148, 1588, 2885, 4206
BsmAI	GTCTC	8 cut(s)	329, 486, 563, 998, 1632, 3949, 4877, 4919
BsmBI	CGTCTC	1 cut(s)	4877
BsmFI	GGGAC	4 cut(s)	148, 1588, 2885, 4206
BsmI	GAATGC	3 cut(s)	499, 1447, 3119
BsnI	GGCC	3 cut(s)	5, 174, 3036
BsoBI	CYCGRG	2 cut(s)	2958, 4299
Bsp119I	TTCGAA	1 cut(s)	343
Bsp120I	GGGCCC	1 cut(s)	172
Bsp1286I	GDGCHC	3 cut(s)	176, 938, 3399
Bsp13I	TCCGGA	1 cut(s)	866
Bsp19I	CCATGG	1 cut(s)	2942
BspACI	CCGC	8 cut(s)	82, 653, 1282, 1522, 1948, 3318, 4051, 4704
BspANI	GGCC	3 cut(s)	5, 174, 3036
BspCNI	CTCAG	8 cut(s)	20, 846, 1396, 3019, 3420, 3466, 4009, 4205
BspDI	ATCGAT	1 cut(s)	4167
BspEI	TCCGGA	1 cut(s)	866
BspFNI	CGCG	2 cut(s)	82, 1818
BspHI	TCATGA	1 cut(s)	3594
BspLI	GGNNCC	5 cut(s)	144, 174, 927, 2313, 3548
BspMAI	CTGCAG	2 cut(s)	1042, 2437
BspMI	ACCTGC	1 cut(s)	2107
BspPI	GGATC	9 cut(s)	1600, 1871, 2624, 3668, 4196, 4363, 4416, 4520, 4964
BspQI	GCTCTTC	1 cut(s)	2565
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	3119
BsrBI	CCGCTC	2 cut(s)	1950, 3320
BsrDI	GCAATG	2 cut(s)	549, 664
BsrFI	RCCGGY	3 cut(s)	139, 1320, 2993
BssAI	RCCGGY	3 cut(s)	139, 1320, 2993
BssECI	CCNNGG	7 cut(s)	235, 885, 961, 1418, 2942, 3542, 4350
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	3 cut(s)	961, 2942, 4350
Bst2UI	CCWGG	7 cut(s)	147, 1420, 1473, 2025, 3426, 4519, 4937
Bst6I	CTCTTC	6 cut(s)	69, 531, 800, 2223, 2565, 3650
BstACI	GRCGYC	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	3119
BstAPI	GCANNNNNTGC	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	1858
BstBI	TTCGAA	1 cut(s)	343
BstDSI	CCRYGG	2 cut(s)	2942, 3542
BstEII	GGTNACC	1 cut(s)	2952
BstFNI	CGCG	2 cut(s)	82, 1818
BstHHI	GCGC	4 cut(s)	82, 1533, 1820, 3421
BstMAI	GTCTC	8 cut(s)	329, 486, 563, 998, 1632, 3949, 4877, 4919
BstMCI	CGRYCG	1 cut(s)	1325
BstNI	CCWGG	7 cut(s)	147, 1420, 1473, 2025, 3426, 4519, 4937
BstNSI	RCATGY	5 cut(s)	213, 1320, 1735, 1998, 3603
BstPAI	GACNNNNGTC	2 cut(s)	47, 3590
BstPI	GGTNACC	1 cut(s)	2952
BstSCI	CCNGG	9 cut(s)	145, 234, 1418, 1471, 2023, 3424, 4517, 4543, 4935
BstSFI	CTRYAG	2 cut(s)	1038, 2433
BstSLI	GKGCMC	1 cut(s)	176
BstSNI	TACGTA	1 cut(s)	1858
BstUI	CGCG	2 cut(s)	82, 1818
BstV1I	GCAGC	7 cut(s)	1052, 2077, 2419, 3436, 3973, 4922, 4956
BstV2I	GAAGAC	4 cut(s)	2743, 2990, 4301, 4430
BstX2I	RGATCY	7 cut(s)	871, 1592, 2629, 3555, 4188, 4368, 4956
BstXI	CCANNNNNNTGG	3 cut(s)	1687, 2949, 3506
BstYI	RGATCY	7 cut(s)	871, 1592, 2629, 3555, 4188, 4368, 4956
Bsu15I	ATCGAT	1 cut(s)	4167
Bsu36I	CCTNAGG	1 cut(s)	3006
BsuI	GTATCC	2 cut(s)	385, 3074
BsuRI	GGCC	3 cut(s)	5, 174, 3036
BsuTUI	ATCGAT	1 cut(s)	4167
BtgI	CCRYGG	2 cut(s)	2942, 3542
BtgZI	GCGATG	2 cut(s)	182, 4842
BtsI	GCAGTG	2 cut(s)	3022, 3908
BtsIMutI	CAGTG	8 cut(s)	841, 929, 2100, 2640, 3022, 3663, 3908, 4009
BveI	ACCTGC	1 cut(s)	2107
CaiI	CAGNNNCTG	1 cut(s)	1258
CciI	TCATGA	1 cut(s)	3594
CfoI	GCGC	4 cut(s)	82, 1533, 1820, 3421
Cfr10I	RCCGGY	3 cut(s)	139, 1320, 2993
Cfr13I	GGNCC	6 cut(s)	172, 173, 698, 1900, 2398, 3721
ClaI	ATCGAT	1 cut(s)	4167
CseI	GACGC	3 cut(s)	145, 1133, 2087
CsiI	ACCWGGT	1 cut(s)	3424
Csp6I	GTAC	6 cut(s)	1016, 1616, 1752, 3767, 4059, 4986
CspAI	ACCGGT	1 cut(s)	2993
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviQI	GTAC	6 cut(s)	1016, 1616, 1752, 3767, 4059, 4986
DraI	TTTAAA	2 cut(s)	2287, 4378
DriI	GACNNNNNGTC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	3034
Eam1104I	CTCTTC	6 cut(s)	69, 531, 800, 2223, 2565, 3650
Eam1105I	GACNNNNNGTC	1 cut(s)	213
EarI	CTCTTC	6 cut(s)	69, 531, 800, 2223, 2565, 3650
EciI	GGCGGA	1 cut(s)	1271
Eco105I	TACGTA	1 cut(s)	1858
Eco130I	CCWWGG	3 cut(s)	961, 2942, 4350
Eco24I	GRGCYC	1 cut(s)	176
Eco32I	GATATC	2 cut(s)	3580, 4758
Eco47I	GGWCC	4 cut(s)	698, 1900, 2398, 3721
Eco57I	CTGAAG	3 cut(s)	512, 1842, 2073
Eco81I	CCTNAGG	1 cut(s)	3006
Eco88I	CYCGRG	2 cut(s)	2958, 4299
Eco91I	GGTNACC	1 cut(s)	2952
EcoO109I	RGGNCCY	2 cut(s)	173, 698
EcoO65I	GGTNACC	1 cut(s)	2952
EcoRI	GAATTC	2 cut(s)	1368, 3537
EcoRII	CCWGG	7 cut(s)	145, 1418, 1471, 2023, 3424, 4517, 4935
EcoRV	GATATC	2 cut(s)	3580, 4758
EcoT14I	CCWWGG	3 cut(s)	961, 2942, 4350
EcoT22I	ATGCAT	3 cut(s)	1318, 2490, 4215
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	3 cut(s)	961, 2942, 4350
Esp3I	CGTCTC	1 cut(s)	4877
FalI	AAGNNNNNCTT	8 cut(s)	505, 537, 1113, 1145, 1925, 1957, 4623, 4655
FaqI	GGGAC	4 cut(s)	148, 1588, 2885, 4206
FauI	CCCGC	2 cut(s)	646, 3325
FbaI	TGATCA	1 cut(s)	3133
FblI	GTMKAC	1 cut(s)	4853
Fnu4HI	GCNGC	9 cut(s)	1041, 2066, 2433, 3450, 3962, 4052, 4704, 4911, 4970
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	9 cut(s)	1041, 2066, 2433, 3450, 3962, 4052, 4704, 4911, 4970
FspBI	CTAG	6 cut(s)	663, 1869, 2885, 3812, 4310, 4953
FspI	TGCGCA	1 cut(s)	3420
GlaI	GCGC	4 cut(s)	81, 1532, 1819, 3420
GluI	GCNGC	9 cut(s)	1041, 2066, 2433, 3450, 3962, 4052, 4704, 4911, 4970
GsuI	CTGGAG	6 cut(s)	1280, 1359, 1494, 2985, 3573, 4251
HaeIII	GGCC	3 cut(s)	5, 174, 3036
HapII	CCGG	8 cut(s)	113, 140, 235, 509, 867, 1321, 2994, 4544
HgaI	GACGC	3 cut(s)	145, 1133, 2087
HhaI	GCGC	4 cut(s)	82, 1533, 1820, 3421
Hin1I	GRCGYC	1 cut(s)	137
Hin6I	GCGC	4 cut(s)	80, 1531, 1818, 3419
HinP1I	GCGC	4 cut(s)	80, 1531, 1818, 3419
HincII	GTYRAC	3 cut(s)	124, 2509, 4648
HindII	GTYRAC	3 cut(s)	124, 2509, 4648
HindIII	AAGCTT	2 cut(s)	1824, 3211
HpaII	CCGG	8 cut(s)	113, 140, 235, 509, 867, 1321, 2994, 4544
Hpy99I	CGWCG	3 cut(s)	34, 74, 185
HpyCH4IV	ACGT	5 cut(s)	53, 258, 294, 1857, 4737
HpySE526I	ACGT	5 cut(s)	53, 258, 294, 1857, 4737
Hsp92I	GRCGYC	1 cut(s)	137
HspAI	GCGC	4 cut(s)	80, 1531, 1818, 3419
Kpn2I	TCCGGA	1 cut(s)	866
Ksp22I	TGATCA	1 cut(s)	3133
LguI	GCTCTTC	1 cut(s)	2565
LmnI	GCTCC	6 cut(s)	1066, 1475, 2311, 3394, 3552, 4520
Lsp1109I	GCAGC	7 cut(s)	1052, 2077, 2419, 3436, 3973, 4922, 4956
MabI	ACCWGGT	1 cut(s)	3424
MaeI	CTAG	6 cut(s)	663, 1869, 2885, 3812, 4310, 4953
MaeII	ACGT	5 cut(s)	53, 258, 294, 1857, 4737
MbiI	CCGCTC	2 cut(s)	1950, 3320
MfeI	CAATTG	2 cut(s)	229, 2759
MflI	RGATCY	7 cut(s)	871, 1592, 2629, 3555, 4188, 4368, 4956
MhlI	GDGCHC	3 cut(s)	176, 938, 3399
MmeI	TCCRAC	7 cut(s)	1145, 2070, 2670, 2679, 2875, 4011, 4686
Mph1103I	ATGCAT	3 cut(s)	1318, 2490, 4215
MroI	TCCGGA	1 cut(s)	866
MroXI	GAANNNNTTC	2 cut(s)	1427, 3494
MslI	CAYNNNNRTG	2 cut(s)	1050, 4809
MspA1I	CMGCKG	1 cut(s)	3059
MspCI	CTTAAG	1 cut(s)	3119
MspI	CCGG	8 cut(s)	113, 140, 235, 509, 867, 1321, 2994, 4544
MspR9I	CCNGG	9 cut(s)	147, 236, 1420, 1473, 2025, 3426, 4519, 4545, 4937
MunI	CAATTG	2 cut(s)	229, 2759
Mva1269I	GAATGC	3 cut(s)	499, 1447, 3119
MvaI	CCWGG	7 cut(s)	147, 1420, 1473, 2025, 3426, 4519, 4937
MvnI	CGCG	2 cut(s)	82, 1818
NciI	CCSGG	2 cut(s)	236, 4545
NcoI	CCATGG	1 cut(s)	2942
NlaIV	GGNNCC	5 cut(s)	144, 174, 927, 2313, 3548
NsbI	TGCGCA	1 cut(s)	3420
NsiI	ATGCAT	3 cut(s)	1318, 2490, 4215
NspI	RCATGY	5 cut(s)	213, 1320, 1735, 1998, 3603
NspV	TTCGAA	1 cut(s)	343
PaeI	GCATGC	2 cut(s)	1320, 1735
PaeR7I	CTCGAG	1 cut(s)	2958
PagI	TCATGA	1 cut(s)	3594
PciI	ACATGT	2 cut(s)	209, 3599
PciSI	GCTCTTC	1 cut(s)	2565
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 189
PctI	GAATGC	3 cut(s)	499, 1447, 3119
PdmI	GAANNNNTTC	2 cut(s)	1427, 3494
PfeI	GAWTC	9 cut(s)	560, 604, 725, 1055, 2294, 2681, 3853, 3905, 4555
PflFI	GACNNNGTC	1 cut(s)	34
PfoI	TCCNGGA	2 cut(s)	1471, 4517
PinAI	ACCGGT	1 cut(s)	2993
PkrI	GCNGC	9 cut(s)	1042, 2067, 2434, 3451, 3963, 4053, 4705, 4912, 4971
Ppu21I	YACGTR	1 cut(s)	1858
PpuMI	RGGWCCY	1 cut(s)	698
PscI	ACATGT	2 cut(s)	209, 3599
PshAI	GACNNNNGTC	2 cut(s)	47, 3590
PsiI	TTATAA	1 cut(s)	1910
Psp1406I	AACGTT	2 cut(s)	294, 4737
Psp5II	RGGWCCY	1 cut(s)	698
Psp6I	CCWGG	7 cut(s)	145, 1418, 1471, 2023, 3424, 4517, 4935
PspEI	GGTNACC	1 cut(s)	2952
PspGI	CCWGG	7 cut(s)	145, 1418, 1471, 2023, 3424, 4517, 4935
PspN4I	GGNNCC	5 cut(s)	144, 174, 927, 2313, 3548
PspOMI	GGGCCC	1 cut(s)	172
PspPI	GGNCC	6 cut(s)	172, 173, 698, 1900, 2398, 3721
PspPPI	RGGWCCY	1 cut(s)	698
PspXI	VCTCGAGB	1 cut(s)	2958
PstI	CTGCAG	2 cut(s)	1042, 2437
PstNI	CAGNNNCTG	1 cut(s)	1258
PsuI	RGATCY	7 cut(s)	871, 1592, 2629, 3555, 4188, 4368, 4956
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	3059
RsaI	GTAC	6 cut(s)	1017, 1617, 1753, 3768, 4060, 4987
RsaNI	GTAC	6 cut(s)	1016, 1616, 1752, 3767, 4059, 4986
RseI	CAYNNNNRTG	2 cut(s)	1050, 4809
SapI	GCTCTTC	1 cut(s)	2565
SatI	GCNGC	9 cut(s)	1041, 2066, 2433, 3450, 3962, 4052, 4704, 4911, 4970
Sau96I	GGNCC	6 cut(s)	172, 173, 698, 1900, 2398, 3721
ScrFI	CCNGG	9 cut(s)	147, 236, 1420, 1473, 2025, 3426, 4519, 4545, 4937
SduI	GDGCHC	3 cut(s)	176, 938, 3399
SexAI	ACCWGGT	1 cut(s)	3424
SfcI	CTRYAG	2 cut(s)	1038, 2433
Sfr274I	CTCGAG	1 cut(s)	2958
SfuI	TTCGAA	1 cut(s)	343
SgrAI	CRCCGGYG	1 cut(s)	139
SinI	GGWCC	4 cut(s)	698, 1900, 2398, 3721
SlaI	CTCGAG	1 cut(s)	2958
SmiMI	CAYNNNNRTG	2 cut(s)	1050, 4809
SmlI	CTYRAG	4 cut(s)	789, 2958, 3119, 3749
SmoI	CTYRAG	4 cut(s)	789, 2958, 3119, 3749
SnaBI	TACGTA	1 cut(s)	1858
SpeI	ACTAGT	1 cut(s)	1868
SphI	GCATGC	2 cut(s)	1320, 1735
SsiI	CCGC	8 cut(s)	82, 653, 1282, 1522, 1948, 3318, 4051, 4704
SspI	AATATT	2 cut(s)	484, 4462
SspMI	CTAG	6 cut(s)	663, 1869, 2885, 3812, 4310, 4953
StyD4I	CCNGG	9 cut(s)	145, 234, 1418, 1471, 2023, 3424, 4517, 4543, 4935
StyI	CCWWGG	3 cut(s)	961, 2942, 4350
TaiI	ACGT	5 cut(s)	56, 261, 297, 1860, 4740
TaqII	GACCGA	1 cut(s)	214
TatI	WGTACW	1 cut(s)	1751
TauI	GCSGC	2 cut(s)	4054, 4706
TfiI	GAWTC	9 cut(s)	560, 604, 725, 1055, 2294, 2681, 3853, 3905, 4555
TscAI	CASTG	8 cut(s)	841, 936, 2100, 2640, 3029, 3670, 3915, 4009
TseI	GCWGC	7 cut(s)	1040, 2065, 2432, 3449, 3961, 4910, 4969
TspGWI	ACGGA	7 cut(s)	47, 1610, 2582, 3134, 3448, 3594, 3638
TspRI	CASTG	8 cut(s)	841, 936, 2100, 2640, 3029, 3670, 3915, 4009
Tth111I	GACNNNGTC	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	3119
VpaK11BI	GGWCC	4 cut(s)	698, 1900, 2398, 3721
XceI	RCATGY	5 cut(s)	213, 1320, 1735, 1998, 3603
XcmI	CCANNNNNNNNNTGG	3 cut(s)	385, 2100, 2912
XhoI	CTCGAG	1 cut(s)	2958
XmiI	GTMKAC	1 cut(s)	4853
XmnI	GAANNNNTTC	2 cut(s)	1427, 3494
XspI	CTAG	6 cut(s)	663, 1869, 2885, 3812, 4310, 4953
Zsp2I	ATGCAT	3 cut(s)	1318, 2490, 4215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.