DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G57660 AT3G57660 |
| fragaria_vesca | FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g35030 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 |
| malus_domestica | MD12G1066600.v1.1 MD14G1066700.v1.1 |
| prunus_persica | Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 |
| pyrus_communis | pycom12g05800 pycom14g05430 |
| rosa_chinensis | RchiOBHm_Chr3g0481021 |
| rosa_laevigata | RLG00000023431 |
| rosa_multiflora | Rmu_sc0002927.1_g000058 |
| rosa_roxburghii | Rroxscaffold_6G00400730 |
| rosa_rugosa | Rorug03G0189100 |
| rosa_samantha | Rh3AG240000 Rh3BG275100 Rh3CG270600 Rh3DG266500 |
| rosa_wichuraiana | Rw0G008430 Rw3G021430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 276, 1913 |
| Acc36I | ACCTGC | 3 cut(s) | 329, 2110, 3278 |
| AccBSI | CCGCTC | 1 cut(s) | 1953 |
| AccI | GTMKAC | 1 cut(s) | 2251 |
| AccII | CGCG | 2 cut(s) | 82, 1821 |
| AciI | CCGC | 6 cut(s) | 165, 413, 1220, 1525, 1951, 1995 |
| AclWI | GGATC | 8 cut(s) | 155, 564, 1337, 1603, 1874, 2312, 2325, 2630 |
| AcoI | YGGCCR | 1 cut(s) | 247 |
| AcsI | RAATTY | 6 cut(s) | 596, 1031, 1371, 1812, 1961, 2666 |
| AcuI | CTGAAG | 5 cut(s) | 512, 1845, 2076, 3286, 3447 |
| AdeI | CACNNNGTG | 2 cut(s) | 443, 3380 |
| AfaI | GTAC | 4 cut(s) | 1020, 1620, 1756, 3257 |
| AfeI | AGCGCT | 1 cut(s) | 1535 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 146, 170, 358, 629, 1874, 2924, 3018 |
| AflIII | ACRYGT | 1 cut(s) | 209 |
| AhlI | ACTAGT | 1 cut(s) | 1871 |
| AjnI | CCWGG | 4 cut(s) | 439, 888, 1474, 2026 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 101, 133 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1265, 1297 |
| Alw21I | GWGCWC | 2 cut(s) | 3385, 3447 |
| Alw26I | GTCTC | 3 cut(s) | 486, 818, 1001 |
| Alw44I | GTGCAC | 2 cut(s) | 3381, 3443 |
| AlwI | GGATC | 8 cut(s) | 155, 564, 1337, 1603, 1874, 2312, 2325, 2630 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1261 |
| Ama87I | CYCGRG | 1 cut(s) | 868 |
| Aor51HI | AGCGCT | 1 cut(s) | 1535 |
| AoxI | GGCC | 3 cut(s) | 3, 172, 247 |
| ApaI | GGGCCC | 1 cut(s) | 176 |
| ApaLI | GTGCAC | 2 cut(s) | 3381, 3443 |
| ApeKI | GCWGC | 5 cut(s) | 2068, 2438, 2855, 3160, 3208 |
| ApoI | RAATTY | 6 cut(s) | 596, 1031, 1371, 1812, 1961, 2666 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2739, 2771 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1430, 2973, 3299 |
| AspLEI | GCGC | 3 cut(s) | 82, 1536, 1823 |
| AspS9I | GGNCC | 6 cut(s) | 172, 173, 698, 1903, 2359, 2404 |
| AsuC2I | CCSGG | 1 cut(s) | 236 |
| AsuII | TTCGAA | 2 cut(s) | 343, 503 |
| AvaI | CYCGRG | 1 cut(s) | 868 |
| AvaII | GGWCC | 4 cut(s) | 698, 1903, 2359, 2404 |
| BaeGI | GKGCMC | 4 cut(s) | 176, 837, 3385, 3447 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2636, 2669 |
| BalI | TGGCCA | 1 cut(s) | 249 |
| BamHI | GGATCC | 1 cut(s) | 2317 |
| BanII | GRGCYC | 1 cut(s) | 176 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2655, 2687 |
| BauI | CACGAG | 2 cut(s) | 389, 3250 |
| BbsI | GAAGAC | 2 cut(s) | 2064, 2749 |
| Bbv12I | GWGCWC | 2 cut(s) | 3385, 3447 |
| BbvCI | CCTCAGC | 1 cut(s) | 7 |
| BbvI | GCAGC | 5 cut(s) | 2080, 2425, 2842, 3147, 3220 |
| BceAI | ACGGC | 1 cut(s) | 60 |
| BciT130I | CCWGG | 4 cut(s) | 441, 890, 1476, 2028 |
| BciVI | GTATCC | 1 cut(s) | 3001 |
| BclI | TGATCA | 1 cut(s) | 675 |
| BcnI | CCSGG | 1 cut(s) | 236 |
| BcoDI | GTCTC | 3 cut(s) | 486, 818, 1001 |
| BcuI | ACTAGT | 1 cut(s) | 1871 |
| BfaI | CTAG | 2 cut(s) | 663, 1872 |
| BfmI | CTRYAG | 4 cut(s) | 2344, 2439, 2648, 3271 |
| BfoI | RGCGCY | 1 cut(s) | 1537 |
| BfuAI | ACCTGC | 3 cut(s) | 329, 2110, 3278 |
| BfuI | GTATCC | 1 cut(s) | 3001 |
| BglII | AGATCT | 1 cut(s) | 874 |
| BisI | GCNGC | 6 cut(s) | 414, 2069, 2439, 2856, 3161, 3209 |
| BlsI | GCNGC | 6 cut(s) | 415, 2070, 2440, 2857, 3162, 3210 |
| Bme1390I | CCNGG | 5 cut(s) | 236, 441, 890, 1476, 2028 |
| Bme18I | GGWCC | 4 cut(s) | 698, 1903, 2359, 2404 |
| BmeT110I | CYCGRG | 1 cut(s) | 868 |
| BmgT120I | GGNCC | 6 cut(s) | 172, 173, 698, 1903, 2359, 2404 |
| BmiI | GGNNCC | 3 cut(s) | 174, 2319, 2916 |
| BmrFI | CCNGG | 5 cut(s) | 236, 441, 890, 1476, 2028 |
| BmrI | ACTGGG | 2 cut(s) | 831, 1677 |
| BmsI | GCATC | 6 cut(s) | 674, 736, 782, 1081, 1228, 2481 |
| BmuI | ACTGGG | 2 cut(s) | 831, 1677 |
| BpiI | GAAGAC | 2 cut(s) | 2064, 2749 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1402, 1434 |
| BpmI | CTGGAG | 5 cut(s) | 587, 1026, 1283, 1497, 3220 |
| Bpu10I | CCTNAGC | 1 cut(s) | 7 |
| Bpu14I | TTCGAA | 2 cut(s) | 343, 503 |
| BpuEI | CTTGAG | 1 cut(s) | 774 |
| BpuMI | CCSGG | 1 cut(s) | 236 |
| Bsa29I | ATCGAT | 1 cut(s) | 261 |
| BsaAI | YACGTR | 1 cut(s) | 1861 |
| BsaBI | GATNNNNATC | 1 cut(s) | 520 |
| BsaI | GGTCTC | 1 cut(s) | 818 |
| BsaJI | CCNNGG | 5 cut(s) | 235, 888, 964, 1421, 2362 |
| BsaWI | WCCGGW | 1 cut(s) | 2638 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1523, 1553, 2676, 2706, 2832, 2862 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 146, 170, 358, 629, 1874, 2924, 3018 |
| Bse118I | RCCGGY | 2 cut(s) | 139, 1323 |
| Bse1I | ACTGG | 6 cut(s) | 837, 1683, 2096, 2116, 2383, 2960 |
| Bse3DI | GCAATG | 4 cut(s) | 174, 549, 664, 2070 |
| Bse8I | GATNNNNATC | 1 cut(s) | 520 |
| BseBI | CCWGG | 4 cut(s) | 441, 890, 1476, 2028 |
| BseCI | ATCGAT | 1 cut(s) | 261 |
| BseDI | CCNNGG | 5 cut(s) | 235, 888, 964, 1421, 2362 |
| BseGI | GGATG | 5 cut(s) | 689, 773, 1072, 1471, 3224 |
| BseJI | GATNNNNATC | 1 cut(s) | 520 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 146, 170, 358, 629, 1874, 2924, 3018 |
| BseMI | GCAATG | 4 cut(s) | 174, 549, 664, 2070 |
| BseMII | CTCAG | 5 cut(s) | 21, 1091, 1398, 1968, 3191 |
| BseNI | ACTGG | 6 cut(s) | 837, 1683, 2096, 2116, 2383, 2960 |
| BseRI | GAGGAG | 1 cut(s) | 1916 |
| BseSI | GKGCMC | 4 cut(s) | 176, 837, 3385, 3447 |
| BseXI | GCAGC | 5 cut(s) | 2080, 2425, 2842, 3147, 3220 |
| BseYI | CCCAGC | 3 cut(s) | 2194, 2198, 3046 |
| BsgI | GTGCAG | 2 cut(s) | 164, 2435 |
| Bsh1236I | CGCG | 2 cut(s) | 82, 1821 |
| BshFI | GGCC | 3 cut(s) | 5, 174, 249 |
| BshVI | ATCGAT | 1 cut(s) | 261 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3385, 3447 |
| BsiHKCI | CYCGRG | 1 cut(s) | 868 |
| BsiSI | CCGG | 6 cut(s) | 113, 140, 235, 509, 1324, 2639 |
| BslFI | GGGAC | 2 cut(s) | 1591, 1655 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 146, 170, 358, 629, 1874, 2924, 3018 |
| BsmAI | GTCTC | 3 cut(s) | 486, 818, 1001 |
| BsmFI | GGGAC | 2 cut(s) | 1591, 1655 |
| BsmI | GAATGC | 2 cut(s) | 499, 1450 |
| BsnI | GGCC | 3 cut(s) | 5, 174, 249 |
| Bso31I | GGTCTC | 1 cut(s) | 818 |
| BsoBI | CYCGRG | 1 cut(s) | 868 |
| Bsp119I | TTCGAA | 2 cut(s) | 343, 503 |
| Bsp120I | GGGCCC | 1 cut(s) | 172 |
| Bsp1286I | GDGCHC | 4 cut(s) | 176, 837, 3385, 3447 |
| BspACI | CCGC | 6 cut(s) | 165, 413, 1220, 1525, 1951, 1995 |
| BspANI | GGCC | 3 cut(s) | 5, 174, 249 |
| BspCNI | CTCAG | 5 cut(s) | 20, 1090, 1399, 1967, 3192 |
| BspDI | ATCGAT | 1 cut(s) | 261 |
| BspFNI | CGCG | 2 cut(s) | 82, 1821 |
| BspLI | GGNNCC | 3 cut(s) | 174, 2319, 2916 |
| BspMAI | CTGCAG | 3 cut(s) | 2443, 2652, 3275 |
| BspMI | ACCTGC | 3 cut(s) | 329, 2110, 3278 |
| BspPI | GGATC | 8 cut(s) | 155, 564, 1337, 1603, 1874, 2312, 2325, 2630 |
| BspQI | GCTCTTC | 1 cut(s) | 2571 |
| BspT104I | TTCGAA | 2 cut(s) | 343, 503 |
| BspTNI | GGTCTC | 1 cut(s) | 818 |
| BsrBI | CCGCTC | 1 cut(s) | 1953 |
| BsrDI | GCAATG | 4 cut(s) | 174, 549, 664, 2070 |
| BsrFI | RCCGGY | 2 cut(s) | 139, 1323 |
| BsrI | ACTGG | 6 cut(s) | 837, 1683, 2096, 2116, 2383, 2960 |
| BssAI | RCCGGY | 2 cut(s) | 139, 1323 |
| BssECI | CCNNGG | 5 cut(s) | 235, 888, 964, 1421, 2362 |
| BssSI | CACGAG | 2 cut(s) | 389, 3250 |
| BssT1I | CCWWGG | 1 cut(s) | 964 |
| Bst2BI | CACGAG | 2 cut(s) | 389, 3250 |
| Bst2UI | CCWGG | 4 cut(s) | 441, 890, 1476, 2028 |
| Bst6I | CTCTTC | 8 cut(s) | 69, 531, 711, 803, 2226, 2277, 2571, 2881 |
| BstBAI | YACGTR | 1 cut(s) | 1861 |
| BstBI | TTCGAA | 2 cut(s) | 343, 503 |
| BstC8I | GCNNGC | 8 cut(s) | 655, 689, 751, 1321, 1664, 1736, 2024, 2333 |
| BstDEI | CTNAG | 8 cut(s) | 7, 19, 947, 1003, 1077, 1407, 1954, 3200 |
| BstDSI | CCRYGG | 2 cut(s) | 1421, 2362 |
| BstF5I | GGATG | 5 cut(s) | 689, 773, 1072, 1471, 3224 |
| BstFNI | CGCG | 2 cut(s) | 82, 1821 |
| BstH2I | RGCGCY | 1 cut(s) | 1537 |
| BstHHI | GCGC | 3 cut(s) | 82, 1536, 1823 |
| BstMAI | GTCTC | 3 cut(s) | 486, 818, 1001 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 151, 505, 659, 1171, 1522, 1531, 3169, 3217 |
| BstNI | CCWGG | 4 cut(s) | 441, 890, 1476, 2028 |
| BstNSI | RCATGY | 5 cut(s) | 213, 1282, 1738, 2001, 3057 |
| BstSCI | CCNGG | 5 cut(s) | 234, 439, 888, 1474, 2026 |
| BstSFI | CTRYAG | 4 cut(s) | 2344, 2439, 2648, 3271 |
| BstSLI | GKGCMC | 4 cut(s) | 176, 837, 3385, 3447 |
| BstSNI | TACGTA | 1 cut(s) | 1861 |
| BstUI | CGCG | 2 cut(s) | 82, 1821 |
| BstV1I | GCAGC | 5 cut(s) | 2080, 2425, 2842, 3147, 3220 |
| BstV2I | GAAGAC | 2 cut(s) | 2064, 2749 |
| BstX2I | RGATCY | 5 cut(s) | 874, 1342, 1595, 2317, 2635 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1690 |
| BstYI | RGATCY | 5 cut(s) | 874, 1342, 1595, 2317, 2635 |
| Bsu15I | ATCGAT | 1 cut(s) | 261 |
| BsuI | GTATCC | 1 cut(s) | 3001 |
| BsuRI | GGCC | 3 cut(s) | 5, 174, 249 |
| BsuTUI | ATCGAT | 1 cut(s) | 261 |
| BtgI | CCRYGG | 2 cut(s) | 1421, 2362 |
| BtsCI | GGATG | 5 cut(s) | 689, 773, 1072, 1471, 3224 |
| BtsIMutI | CAGTG | 3 cut(s) | 844, 2103, 3331 |
| BveI | ACCTGC | 3 cut(s) | 329, 2110, 3278 |
| Cac8I | GCNNGC | 8 cut(s) | 655, 689, 751, 1321, 1664, 1736, 2024, 2333 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1261 |
| CfoI | GCGC | 3 cut(s) | 82, 1536, 1823 |
| Cfr10I | RCCGGY | 2 cut(s) | 139, 1323 |
| Cfr13I | GGNCC | 6 cut(s) | 172, 173, 698, 1903, 2359, 2404 |
| ClaI | ATCGAT | 1 cut(s) | 261 |
| CseI | GACGC | 3 cut(s) | 1136, 2069, 2090 |
| CsiI | ACCWGGT | 1 cut(s) | 439 |
| Csp6I | GTAC | 4 cut(s) | 1019, 1619, 1755, 3256 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 193, 228, 3318, 3353 |
| CviQI | GTAC | 4 cut(s) | 1019, 1619, 1755, 3256 |
| DdeI | CTNAG | 8 cut(s) | 7, 19, 947, 1003, 1077, 1407, 1954, 3200 |
| DraIII | CACNNNGTG | 2 cut(s) | 443, 3380 |
| EaeI | YGGCCR | 1 cut(s) | 247 |
| Eam1104I | CTCTTC | 8 cut(s) | 69, 531, 711, 803, 2226, 2277, 2571, 2881 |
| EarI | CTCTTC | 8 cut(s) | 69, 531, 711, 803, 2226, 2277, 2571, 2881 |
| Eco105I | TACGTA | 1 cut(s) | 1861 |
| Eco130I | CCWWGG | 1 cut(s) | 964 |
| Eco24I | GRGCYC | 1 cut(s) | 176 |
| Eco31I | GGTCTC | 1 cut(s) | 818 |
| Eco32I | GATATC | 1 cut(s) | 955 |
| Eco47I | GGWCC | 4 cut(s) | 698, 1903, 2359, 2404 |
| Eco47III | AGCGCT | 1 cut(s) | 1535 |
| Eco57I | CTGAAG | 5 cut(s) | 512, 1845, 2076, 3286, 3447 |
| Eco88I | CYCGRG | 1 cut(s) | 868 |
| EcoO109I | RGGNCCY | 2 cut(s) | 173, 698 |
| EcoRI | GAATTC | 1 cut(s) | 1371 |
| EcoRII | CCWGG | 4 cut(s) | 439, 888, 1474, 2026 |
| EcoRV | GATATC | 1 cut(s) | 955 |
| EcoT14I | CCWWGG | 1 cut(s) | 964 |
| EcoT22I | ATGCAT | 1 cut(s) | 2496 |
| EcoT38I | GRGCYC | 1 cut(s) | 176 |
| ErhI | CCWWGG | 1 cut(s) | 964 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1116, 1148, 1928, 1960 |
| FaqI | GGGAC | 2 cut(s) | 1591, 1655 |
| FauI | CCCGC | 2 cut(s) | 172, 1213 |
| FbaI | TGATCA | 1 cut(s) | 675 |
| FblI | GTMKAC | 1 cut(s) | 2251 |
| Fnu4HI | GCNGC | 6 cut(s) | 414, 2069, 2439, 2856, 3161, 3209 |
| FokI | GGATG | 5 cut(s) | 696, 760, 1059, 1458, 3211 |
| FriOI | GRGCYC | 1 cut(s) | 176 |
| Fsp4HI | GCNGC | 6 cut(s) | 414, 2069, 2439, 2856, 3161, 3209 |
| FspBI | CTAG | 2 cut(s) | 663, 1872 |
| GlaI | GCGC | 3 cut(s) | 81, 1535, 1822 |
| GluI | GCNGC | 6 cut(s) | 414, 2069, 2439, 2856, 3161, 3209 |
| GsaI | CCCAGC | 3 cut(s) | 2198, 2202, 3050 |
| GsuI | CTGGAG | 5 cut(s) | 587, 1026, 1283, 1497, 3220 |
| HaeII | RGCGCY | 1 cut(s) | 1537 |
| HaeIII | GGCC | 3 cut(s) | 5, 174, 249 |
| HapII | CCGG | 6 cut(s) | 113, 140, 235, 509, 1324, 2639 |
| HgaI | GACGC | 3 cut(s) | 1136, 2069, 2090 |
| HhaI | GCGC | 3 cut(s) | 82, 1536, 1823 |
| Hin6I | GCGC | 3 cut(s) | 80, 1534, 1821 |
| HinP1I | GCGC | 3 cut(s) | 80, 1534, 1821 |
| HincII | GTYRAC | 3 cut(s) | 124, 2252, 2515 |
| HindII | GTYRAC | 3 cut(s) | 124, 2252, 2515 |
| HindIII | AAGCTT | 3 cut(s) | 1827, 2903, 3298 |
| HpaII | CCGG | 6 cut(s) | 113, 140, 235, 509, 1324, 2639 |
| Hpy99I | CGWCG | 1 cut(s) | 185 |
| HpyCH4IV | ACGT | 8 cut(s) | 53, 1860, 2045, 2132, 2412, 3033, 3379, 3441 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 151, 505, 659, 1171, 1522, 1531, 3169, 3217 |
| HpyF3I | CTNAG | 8 cut(s) | 7, 19, 947, 1003, 1077, 1407, 1954, 3200 |
| HpySE526I | ACGT | 8 cut(s) | 53, 1860, 2045, 2132, 2412, 3033, 3379, 3441 |
| HspAI | GCGC | 3 cut(s) | 80, 1534, 1821 |
| Ksp22I | TGATCA | 1 cut(s) | 675 |
| LguI | GCTCTTC | 1 cut(s) | 2571 |
| LmnI | GCTCC | 5 cut(s) | 1069, 1478, 1531, 2914, 3021 |
| Lsp1109I | GCAGC | 5 cut(s) | 2080, 2425, 2842, 3147, 3220 |
| LweI | GCATC | 6 cut(s) | 674, 736, 782, 1081, 1228, 2481 |
| MabI | ACCWGGT | 1 cut(s) | 439 |
| MaeI | CTAG | 2 cut(s) | 663, 1872 |
| MaeII | ACGT | 8 cut(s) | 53, 1860, 2045, 2132, 2412, 3033, 3379, 3441 |
| MbiI | CCGCTC | 1 cut(s) | 1953 |
| MfeI | CAATTG | 2 cut(s) | 380, 2765 |
| MflI | RGATCY | 5 cut(s) | 874, 1342, 1595, 2317, 2635 |
| MhlI | GDGCHC | 4 cut(s) | 176, 837, 3385, 3447 |
| MlsI | TGGCCA | 1 cut(s) | 249 |
| MluNI | TGGCCA | 1 cut(s) | 249 |
| MlyI | GAGTC | 5 cut(s) | 44, 422, 428, 781, 2003 |
| MmeI | TCCRAC | 4 cut(s) | 1148, 2596, 2634, 2685 |
| Mox20I | TGGCCA | 1 cut(s) | 249 |
| Mph1103I | ATGCAT | 1 cut(s) | 2496 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1430, 2973, 3299 |
| MscI | TGGCCA | 1 cut(s) | 249 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1053 |
| Msp20I | TGGCCA | 1 cut(s) | 249 |
| MspA1I | CMGCKG | 1 cut(s) | 2198 |
| MspI | CCGG | 6 cut(s) | 113, 140, 235, 509, 1324, 2639 |
| MspR9I | CCNGG | 5 cut(s) | 236, 441, 890, 1476, 2028 |
| MunI | CAATTG | 2 cut(s) | 380, 2765 |
| Mva1269I | GAATGC | 2 cut(s) | 499, 1450 |
| MvaI | CCWGG | 4 cut(s) | 441, 890, 1476, 2028 |
| MvnI | CGCG | 2 cut(s) | 82, 1821 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 151, 505, 659, 1171, 1522, 1531, 3169, 3217 |
| NciI | CCSGG | 1 cut(s) | 236 |
| NlaIV | GGNNCC | 3 cut(s) | 174, 2319, 2916 |
| NmeAIII | GCCGAG | 1 cut(s) | 377 |
| NmuCI | GTSAC | 6 cut(s) | 40, 332, 784, 986, 1625, 2692 |
| NsiI | ATGCAT | 1 cut(s) | 2496 |
| NspI | RCATGY | 5 cut(s) | 213, 1282, 1738, 2001, 3057 |
| NspV | TTCGAA | 2 cut(s) | 343, 503 |
| PaeI | GCATGC | 1 cut(s) | 1738 |
| PciI | ACATGT | 1 cut(s) | 209 |
| PciSI | GCTCTTC | 1 cut(s) | 2571 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 50, 267, 349 |
| PctI | GAATGC | 2 cut(s) | 499, 1450 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1430, 2973, 3299 |
| PfeI | GAWTC | 7 cut(s) | 604, 725, 1058, 1897, 2218, 2300, 2687 |
| PfoI | TCCNGGA | 1 cut(s) | 1474 |
| PkrI | GCNGC | 6 cut(s) | 415, 2070, 2440, 2857, 3162, 3210 |
| PleI | GAGTC | 5 cut(s) | 43, 422, 428, 781, 2003 |
| PpsI | GAGTC | 5 cut(s) | 43, 422, 428, 781, 2003 |
| Ppu21I | YACGTR | 1 cut(s) | 1861 |
| PpuMI | RGGWCCY | 1 cut(s) | 698 |
| PscI | ACATGT | 1 cut(s) | 209 |
| PsiI | TTATAA | 2 cut(s) | 276, 1913 |
| Psp5II | RGGWCCY | 1 cut(s) | 698 |
| Psp6I | CCWGG | 4 cut(s) | 439, 888, 1474, 2026 |
| PspFI | CCCAGC | 3 cut(s) | 2194, 2198, 3046 |
| PspGI | CCWGG | 4 cut(s) | 439, 888, 1474, 2026 |
| PspN4I | GGNNCC | 3 cut(s) | 174, 2319, 2916 |
| PspOMI | GGGCCC | 1 cut(s) | 172 |
| PspPI | GGNCC | 6 cut(s) | 172, 173, 698, 1903, 2359, 2404 |
| PspPPI | RGGWCCY | 1 cut(s) | 698 |
| PstI | CTGCAG | 3 cut(s) | 2443, 2652, 3275 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1261 |
| PsuI | RGATCY | 5 cut(s) | 874, 1342, 1595, 2317, 2635 |
| PvuII | CAGCTG | 1 cut(s) | 2198 |
| RsaI | GTAC | 4 cut(s) | 1020, 1620, 1756, 3257 |
| RsaNI | GTAC | 4 cut(s) | 1019, 1619, 1755, 3256 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1053 |
| SalI | GTCGAC | 1 cut(s) | 2250 |
| SapI | GCTCTTC | 1 cut(s) | 2571 |
| SatI | GCNGC | 6 cut(s) | 414, 2069, 2439, 2856, 3161, 3209 |
| Sau96I | GGNCC | 6 cut(s) | 172, 173, 698, 1903, 2359, 2404 |
| SchI | GAGTC | 5 cut(s) | 44, 422, 428, 781, 2003 |
| ScrFI | CCNGG | 5 cut(s) | 236, 441, 890, 1476, 2028 |
| SduI | GDGCHC | 4 cut(s) | 176, 837, 3385, 3447 |
| SexAI | ACCWGGT | 1 cut(s) | 439 |
| SfaNI | GCATC | 6 cut(s) | 674, 736, 782, 1081, 1228, 2481 |
| SfcI | CTRYAG | 4 cut(s) | 2344, 2439, 2648, 3271 |
| SfuI | TTCGAA | 2 cut(s) | 343, 503 |
| SgrAI | CRCCGGYG | 1 cut(s) | 139 |
| SinI | GGWCC | 4 cut(s) | 698, 1903, 2359, 2404 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1053 |
| SmlI | CTYRAG | 1 cut(s) | 789 |
| SmoI | CTYRAG | 1 cut(s) | 789 |
| SnaBI | TACGTA | 1 cut(s) | 1861 |
| SpeI | ACTAGT | 1 cut(s) | 1871 |
| SphI | GCATGC | 1 cut(s) | 1738 |
| SsiI | CCGC | 6 cut(s) | 165, 413, 1220, 1525, 1951, 1995 |
| SspMI | CTAG | 2 cut(s) | 663, 1872 |
| StyD4I | CCNGG | 5 cut(s) | 234, 439, 888, 1474, 2026 |
| StyI | CCWWGG | 1 cut(s) | 964 |
| TaiI | ACGT | 8 cut(s) | 56, 1863, 2048, 2135, 2415, 3036, 3382, 3444 |
| TaqI | TCGA | 7 cut(s) | 180, 261, 343, 503, 1203, 1888, 2251 |
| TatI | WGTACW | 2 cut(s) | 1618, 1754 |
| TauI | GCSGC | 1 cut(s) | 416 |
| TfiI | GAWTC | 7 cut(s) | 604, 725, 1058, 1897, 2218, 2300, 2687 |
| TscAI | CASTG | 3 cut(s) | 844, 2103, 3338 |
| TseFI | GTSAC | 6 cut(s) | 40, 332, 784, 986, 1625, 2692 |
| TseI | GCWGC | 5 cut(s) | 2068, 2438, 2855, 3160, 3208 |
| Tsp45I | GTSAC | 6 cut(s) | 40, 332, 784, 986, 1625, 2692 |
| TspGWI | ACGGA | 8 cut(s) | 47, 1274, 1410, 1613, 2351, 2588, 2711, 2864 |
| TspRI | CASTG | 3 cut(s) | 844, 2103, 3338 |
| VneI | GTGCAC | 2 cut(s) | 3381, 3443 |
| VpaK11BI | GGWCC | 4 cut(s) | 698, 1903, 2359, 2404 |
| XapI | RAATTY | 6 cut(s) | 596, 1031, 1371, 1812, 1961, 2666 |
| XceI | RCATGY | 5 cut(s) | 213, 1282, 1738, 2001, 3057 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2103, 2150 |
| XmiI | GTMKAC | 1 cut(s) | 2251 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1430, 2973, 3299 |
| XspI | CTAG | 2 cut(s) | 663, 1872 |
| Zsp2I | ATGCAT | 1 cut(s) | 2496 |