DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G57660 AT3G57660 |
| fragaria_vesca | FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g35030 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 |
| malus_domestica | MD12G1066600.v1.1 MD14G1066700.v1.1 |
| prunus_persica | Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 |
| pyrus_communis | pycom12g05800 pycom14g05430 |
| rosa_chinensis | RchiOBHm_Chr3g0481021 |
| rosa_laevigata | RLG00000023431 |
| rosa_multiflora | Rmu_sc0002927.1_g000058 |
| rosa_roxburghii | Rroxscaffold_6G00400730 |
| rosa_rugosa | Rorug03G0189100 |
| rosa_samantha | Rh3AG240000 Rh3BG275100 Rh3CG270600 Rh3DG266500 |
| rosa_wichuraiana | Rw0G008430 Rw3G021430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 848 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2081 |
| Acc36I | ACCTGC | 1 cut(s) | 1045 |
| AccBSI | CCGCTC | 2 cut(s) | 888, 2261 |
| AccI | GTMKAC | 1 cut(s) | 1186 |
| AccII | CGCG | 1 cut(s) | 756 |
| AciI | CCGC | 9 cut(s) | 155, 460, 886, 930, 2259, 2931, 2998, 3651, 3702 |
| AcoI | YGGCCR | 1 cut(s) | 1975 |
| AcuI | CTGAAG | 3 cut(s) | 780, 1011, 3156 |
| AdeI | CACNNNGTG | 1 cut(s) | 1106 |
| AfaI | GTAC | 4 cut(s) | 555, 691, 2680, 3877 |
| AfeI | AGCGCT | 1 cut(s) | 470 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 809, 1849, 1885, 1904, 3176, 3222 |
| AflIII | ACRYGT | 1 cut(s) | 2540 |
| AgeI | ACCGGT | 1 cut(s) | 1934 |
| AhlI | ACTAGT | 1 cut(s) | 806 |
| AjnI | CCWGG | 4 cut(s) | 409, 961, 2365, 3464 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 200, 232 |
| Alw21I | GWGCWC | 2 cut(s) | 2340, 2751 |
| Alw26I | GTCTC | 4 cut(s) | 2864, 3174, 3767, 3809 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 196, 3743 |
| Ama87I | CYCGRG | 1 cut(s) | 1899 |
| Aor51HI | AGCGCT | 1 cut(s) | 470 |
| AoxI | GGCC | 1 cut(s) | 1975 |
| ApeKI | GCWGC | 5 cut(s) | 1003, 1373, 2390, 3800, 3859 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1674, 1706, 2192, 2224 |
| AsiGI | ACCGGT | 1 cut(s) | 1934 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 365, 2435 |
| AspLEI | GCGC | 2 cut(s) | 471, 758 |
| AspS9I | GGNCC | 3 cut(s) | 838, 1294, 1339 |
| AsuC2I | CCSGG | 1 cut(s) | 3492 |
| AsuII | TTCGAA | 1 cut(s) | 2723 |
| AvaI | CYCGRG | 1 cut(s) | 1899 |
| AvaII | GGWCC | 3 cut(s) | 838, 1294, 1339 |
| AxyI | CCTNAGG | 1 cut(s) | 1947 |
| BaeGI | GKGCMC | 1 cut(s) | 3008 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1571, 1604, 1986, 2019 |
| BamHI | GGATCC | 1 cut(s) | 1252 |
| BanII | GRGCYC | 1 cut(s) | 2751 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1590, 1622 |
| BbsI | GAAGAC | 6 cut(s) | 999, 1684, 1931, 3218, 3248, 3377 |
| Bbv12I | GWGCWC | 2 cut(s) | 2340, 2751 |
| BbvCI | CCTCAGC | 1 cut(s) | 2964 |
| BbvI | GCAGC | 5 cut(s) | 1015, 1360, 2377, 3812, 3846 |
| BceAI | ACGGC | 5 cut(s) | 1962, 2501, 2661, 3390, 3792 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2915, 2949 |
| BciT130I | CCWGG | 4 cut(s) | 411, 963, 2367, 3466 |
| BciVI | GTATCC | 1 cut(s) | 2015 |
| BcnI | CCSGG | 1 cut(s) | 3492 |
| BcoDI | GTCTC | 4 cut(s) | 2864, 3174, 3767, 3809 |
| BcuI | ACTAGT | 1 cut(s) | 806 |
| BfaI | CTAG | 6 cut(s) | 807, 1826, 2582, 2753, 3257, 3843 |
| BfmI | CTRYAG | 4 cut(s) | 1279, 1374, 1583, 2400 |
| BfoI | RGCGCY | 1 cut(s) | 472 |
| BfuAI | ACCTGC | 1 cut(s) | 1045 |
| BfuI | GTATCC | 1 cut(s) | 2015 |
| BglII | AGATCT | 1 cut(s) | 2496 |
| BisI | GCNGC | 7 cut(s) | 1004, 1374, 2391, 2999, 3651, 3801, 3860 |
| BlsI | GCNGC | 7 cut(s) | 1005, 1375, 2392, 3000, 3652, 3802, 3861 |
| Bme1390I | CCNGG | 5 cut(s) | 411, 963, 2367, 3466, 3492 |
| Bme18I | GGWCC | 3 cut(s) | 838, 1294, 1339 |
| BmeT110I | CYCGRG | 1 cut(s) | 1899 |
| BmgT120I | GGNCC | 3 cut(s) | 838, 1294, 1339 |
| BmiI | GGNNCC | 3 cut(s) | 1254, 2489, 3305 |
| BmrFI | CCNGG | 5 cut(s) | 411, 963, 2367, 3466, 3492 |
| BmrI | ACTGGG | 1 cut(s) | 612 |
| BmuI | ACTGGG | 1 cut(s) | 612 |
| BpiI | GAAGAC | 6 cut(s) | 999, 1684, 1931, 3218, 3248, 3377 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 337, 369 |
| BpmI | CTGGAG | 6 cut(s) | 218, 432, 1926, 2514, 2711, 3198 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2964 |
| Bpu14I | TTCGAA | 1 cut(s) | 2723 |
| BpuEI | CTTGAG | 1 cut(s) | 2045 |
| BpuMI | CCSGG | 1 cut(s) | 3492 |
| BsaAI | YACGTR | 1 cut(s) | 796 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2661 |
| BsaJI | CCNNGG | 6 cut(s) | 356, 1297, 1883, 2483, 3194, 3507 |
| BsaWI | WCCGGW | 2 cut(s) | 1573, 1934 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 458, 488, 1611, 1641, 2361, 2391 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 809, 1849, 1885, 1904, 3176, 3222 |
| Bse118I | RCCGGY | 2 cut(s) | 258, 1934 |
| Bse1I | ACTGG | 9 cut(s) | 618, 1051, 1318, 2181, 2375, 2531, 2694, 3863, 3883 |
| Bse21I | CCTNAGG | 1 cut(s) | 1947 |
| Bse3DI | GCAATG | 2 cut(s) | 1005, 3630 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2661 |
| BseBI | CCWGG | 4 cut(s) | 411, 963, 2367, 3466 |
| BseDI | CCNNGG | 6 cut(s) | 356, 1297, 1883, 2483, 3194, 3507 |
| BseJI | GATNNNNATC | 1 cut(s) | 2661 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 809, 1849, 1885, 1904, 3176, 3222 |
| BseMI | GCAATG | 2 cut(s) | 1005, 3630 |
| BseMII | CTCAG | 7 cut(s) | 26, 333, 903, 1961, 2362, 2408, 2955 |
| BseNI | ACTGG | 9 cut(s) | 618, 1051, 1318, 2181, 2375, 2531, 2694, 3863, 3883 |
| BseRI | GAGGAG | 2 cut(s) | 851, 2759 |
| BseSI | GKGCMC | 1 cut(s) | 3008 |
| BseXI | GCAGC | 5 cut(s) | 1015, 1360, 2377, 3812, 3846 |
| BseYI | CCCAGC | 4 cut(s) | 1129, 1133, 2447, 2901 |
| BsgI | GTGCAG | 2 cut(s) | 1370, 2955 |
| Bsh1236I | CGCG | 1 cut(s) | 756 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3200 |
| BshFI | GGCC | 1 cut(s) | 1977 |
| BshTI | ACCGGT | 1 cut(s) | 1934 |
| BsiEI | CGRYCG | 1 cut(s) | 3200 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2340, 2751 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1899 |
| BsiSI | CCGG | 4 cut(s) | 259, 1574, 1935, 3491 |
| BslFI | GGGAC | 4 cut(s) | 526, 590, 1826, 3239 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 809, 1849, 1885, 1904, 3176, 3222 |
| BsmAI | GTCTC | 4 cut(s) | 2864, 3174, 3767, 3809 |
| BsmBI | CGTCTC | 2 cut(s) | 3767, 3809 |
| BsmFI | GGGAC | 4 cut(s) | 526, 590, 1826, 3239 |
| BsmI | GAATGC | 2 cut(s) | 385, 2060 |
| BsnI | GGCC | 1 cut(s) | 1977 |
| BsoBI | CYCGRG | 1 cut(s) | 1899 |
| Bsp119I | TTCGAA | 1 cut(s) | 2723 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2340, 2751, 3008 |
| BspACI | CCGC | 9 cut(s) | 155, 460, 886, 930, 2259, 2931, 2998, 3651, 3702 |
| BspANI | GGCC | 1 cut(s) | 1977 |
| BspCNI | CTCAG | 7 cut(s) | 25, 334, 902, 1960, 2361, 2407, 2956 |
| BspFNI | CGCG | 1 cut(s) | 756 |
| BspLI | GGNNCC | 3 cut(s) | 1254, 2489, 3305 |
| BspMAI | CTGCAG | 2 cut(s) | 1378, 1587 |
| BspMI | ACCTGC | 1 cut(s) | 1045 |
| BspQI | GCTCTTC | 1 cut(s) | 1506 |
| BspT104I | TTCGAA | 1 cut(s) | 2723 |
| BsrBI | CCGCTC | 2 cut(s) | 888, 2261 |
| BsrDI | GCAATG | 2 cut(s) | 1005, 3630 |
| BsrFI | RCCGGY | 2 cut(s) | 258, 1934 |
| BsrI | ACTGG | 9 cut(s) | 618, 1051, 1318, 2181, 2375, 2531, 2694, 3863, 3883 |
| BssAI | RCCGGY | 2 cut(s) | 258, 1934 |
| BssECI | CCNNGG | 6 cut(s) | 356, 1297, 1883, 2483, 3194, 3507 |
| BssT1I | CCWWGG | 1 cut(s) | 1883 |
| Bst2UI | CCWGG | 4 cut(s) | 411, 963, 2367, 3466 |
| Bst4CI | ACNGT | 9 cut(s) | 19, 151, 1148, 1414, 2083, 2608, 2945, 3035, 3198 |
| Bst6I | CTCTTC | 4 cut(s) | 1161, 1212, 1506, 2591 |
| BstBAI | YACGTR | 1 cut(s) | 796 |
| BstBI | TTCGAA | 1 cut(s) | 2723 |
| BstC8I | GCNNGC | 7 cut(s) | 256, 599, 671, 959, 1268, 1975, 3531 |
| BstDEI | CTNAG | 9 cut(s) | 12, 342, 889, 1103, 1947, 2348, 2394, 2964, 3189 |
| BstDSI | CCRYGG | 5 cut(s) | 356, 1297, 2483, 3194, 3507 |
| BstEII | GGTNACC | 1 cut(s) | 1893 |
| BstFNI | CGCG | 1 cut(s) | 756 |
| BstH2I | RGCGCY | 1 cut(s) | 472 |
| BstHHI | GCGC | 2 cut(s) | 471, 758 |
| BstMAI | GTCTC | 4 cut(s) | 2864, 3174, 3767, 3809 |
| BstMCI | CGRYCG | 1 cut(s) | 3200 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 106, 457, 466, 1974, 3535 |
| BstNI | CCWGG | 4 cut(s) | 411, 963, 2367, 3466 |
| BstNSI | RCATGY | 4 cut(s) | 217, 673, 936, 2544 |
| BstPI | GGTNACC | 1 cut(s) | 1893 |
| BstSCI | CCNGG | 5 cut(s) | 409, 961, 2365, 3464, 3490 |
| BstSFI | CTRYAG | 4 cut(s) | 1279, 1374, 1583, 2400 |
| BstSLI | GKGCMC | 1 cut(s) | 3008 |
| BstSNI | TACGTA | 1 cut(s) | 796 |
| BstUI | CGCG | 1 cut(s) | 756 |
| BstV1I | GCAGC | 5 cut(s) | 1015, 1360, 2377, 3812, 3846 |
| BstV2I | GAAGAC | 6 cut(s) | 999, 1684, 1931, 3218, 3248, 3377 |
| BstX2I | RGATCY | 7 cut(s) | 277, 530, 1252, 1570, 2496, 3315, 3846 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 625, 2447 |
| BstYI | RGATCY | 7 cut(s) | 277, 530, 1252, 1570, 2496, 3315, 3846 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1947 |
| BsuI | GTATCC | 1 cut(s) | 2015 |
| BsuRI | GGCC | 1 cut(s) | 1977 |
| BtgI | CCRYGG | 5 cut(s) | 356, 1297, 2483, 3194, 3507 |
| BtsI | GCAGTG | 1 cut(s) | 1963 |
| BtsIMutI | CAGTG | 4 cut(s) | 1963, 2604, 2950, 3870 |
| BveI | ACCTGC | 1 cut(s) | 1045 |
| Cac8I | GCNNGC | 7 cut(s) | 256, 599, 671, 959, 1268, 1975, 3531 |
| CaiI | CAGNNNCTG | 2 cut(s) | 196, 3743 |
| CfoI | GCGC | 2 cut(s) | 471, 758 |
| Cfr10I | RCCGGY | 2 cut(s) | 258, 1934 |
| Cfr13I | GGNCC | 3 cut(s) | 838, 1294, 1339 |
| CseI | GACGC | 3 cut(s) | 71, 1004, 1025 |
| Csp6I | GTAC | 4 cut(s) | 554, 690, 2679, 3876 |
| CspAI | ACCGGT | 1 cut(s) | 1934 |
| CviQI | GTAC | 4 cut(s) | 554, 690, 2679, 3876 |
| DdeI | CTNAG | 9 cut(s) | 12, 342, 889, 1103, 1947, 2348, 2394, 2964, 3189 |
| DraI | TTTAAA | 1 cut(s) | 3325 |
| DraIII | CACNNNGTG | 1 cut(s) | 1106 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2081 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2081 |
| EaeI | YGGCCR | 1 cut(s) | 1975 |
| Eam1104I | CTCTTC | 4 cut(s) | 1161, 1212, 1506, 2591 |
| EarI | CTCTTC | 4 cut(s) | 1161, 1212, 1506, 2591 |
| Ecl136II | GAGCTC | 1 cut(s) | 2749 |
| Eco105I | TACGTA | 1 cut(s) | 796 |
| Eco130I | CCWWGG | 1 cut(s) | 1883 |
| Eco24I | GRGCYC | 1 cut(s) | 2751 |
| Eco32I | GATATC | 1 cut(s) | 2521 |
| Eco47I | GGWCC | 3 cut(s) | 838, 1294, 1339 |
| Eco47III | AGCGCT | 1 cut(s) | 470 |
| Eco53kI | GAGCTC | 1 cut(s) | 2749 |
| Eco57I | CTGAAG | 3 cut(s) | 780, 1011, 3156 |
| Eco81I | CCTNAGG | 1 cut(s) | 1947 |
| Eco88I | CYCGRG | 1 cut(s) | 1899 |
| Eco91I | GGTNACC | 1 cut(s) | 1893 |
| EcoICRI | GAGCTC | 1 cut(s) | 2749 |
| EcoO65I | GGTNACC | 1 cut(s) | 1893 |
| EcoRI | GAATTC | 2 cut(s) | 306, 2478 |
| EcoRII | CCWGG | 4 cut(s) | 409, 961, 2365, 3464 |
| EcoRV | GATATC | 1 cut(s) | 2521 |
| EcoT14I | CCWWGG | 1 cut(s) | 1883 |
| EcoT22I | ATGCAT | 1 cut(s) | 1431 |
| EcoT38I | GRGCYC | 1 cut(s) | 2751 |
| ErhI | CCWWGG | 1 cut(s) | 1883 |
| Esp3I | CGTCTC | 2 cut(s) | 3767, 3809 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 51, 83, 863, 895, 3570, 3602 |
| FaqI | GGGAC | 4 cut(s) | 526, 590, 1826, 3239 |
| FauI | CCCGC | 2 cut(s) | 148, 2266 |
| FblI | GTMKAC | 1 cut(s) | 1186 |
| Fnu4HI | GCNGC | 7 cut(s) | 1004, 1374, 2391, 2999, 3651, 3801, 3860 |
| FokI | GGATG | 9 cut(s) | 393, 1929, 2141, 2582, 2795, 2993, 3053, 3134, 3833 |
| FriOI | GRGCYC | 1 cut(s) | 2751 |
| Fsp4HI | GCNGC | 7 cut(s) | 1004, 1374, 2391, 2999, 3651, 3801, 3860 |
| FspBI | CTAG | 6 cut(s) | 807, 1826, 2582, 2753, 3257, 3843 |
| GlaI | GCGC | 2 cut(s) | 470, 757 |
| GluI | GCNGC | 7 cut(s) | 1004, 1374, 2391, 2999, 3651, 3801, 3860 |
| GsaI | CCCAGC | 4 cut(s) | 1133, 1137, 2451, 2905 |
| GsuI | CTGGAG | 6 cut(s) | 218, 432, 1926, 2514, 2711, 3198 |
| HaeII | RGCGCY | 1 cut(s) | 472 |
| HaeIII | GGCC | 1 cut(s) | 1977 |
| HapII | CCGG | 4 cut(s) | 259, 1574, 1935, 3491 |
| HgaI | GACGC | 3 cut(s) | 71, 1004, 1025 |
| HhaI | GCGC | 2 cut(s) | 471, 758 |
| Hin6I | GCGC | 2 cut(s) | 469, 756 |
| HinP1I | GCGC | 2 cut(s) | 469, 756 |
| HincII | GTYRAC | 3 cut(s) | 1187, 1450, 3595 |
| HindII | GTYRAC | 3 cut(s) | 1187, 1450, 3595 |
| HindIII | AAGCTT | 2 cut(s) | 762, 2152 |
| HpaII | CCGG | 4 cut(s) | 259, 1574, 1935, 3491 |
| Hpy166II | GTNNAC | 8 cut(s) | 778, 1044, 1187, 1437, 1450, 1661, 2948, 3595 |
| Hpy8I | GTNNAC | 8 cut(s) | 778, 1044, 1187, 1437, 1450, 1661, 2948, 3595 |
| Hpy99I | CGWCG | 1 cut(s) | 1191 |
| HpyCH4III | ACNGT | 9 cut(s) | 19, 151, 1148, 1414, 2083, 2608, 2945, 3035, 3198 |
| HpyCH4IV | ACGT | 4 cut(s) | 795, 980, 1067, 1347 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 106, 457, 466, 1974, 3535 |
| HpyF3I | CTNAG | 9 cut(s) | 12, 342, 889, 1103, 1947, 2348, 2394, 2964, 3189 |
| HpySE526I | ACGT | 4 cut(s) | 795, 980, 1067, 1347 |
| HspAI | GCGC | 2 cut(s) | 469, 756 |
| LguI | GCTCTTC | 1 cut(s) | 1506 |
| LmnI | GCTCC | 9 cut(s) | 4, 413, 466, 2335, 2493, 2746, 2754, 2960, 3467 |
| Lsp1109I | GCAGC | 5 cut(s) | 1015, 1360, 2377, 3812, 3846 |
| MaeI | CTAG | 6 cut(s) | 807, 1826, 2582, 2753, 3257, 3843 |
| MaeII | ACGT | 4 cut(s) | 795, 980, 1067, 1347 |
| MaeIII | GTNAC | 8 cut(s) | 349, 489, 560, 1627, 1893, 2467, 2635, 3127 |
| MbiI | CCGCTC | 2 cut(s) | 888, 2261 |
| MfeI | CAATTG | 1 cut(s) | 1700 |
| MflI | RGATCY | 7 cut(s) | 277, 530, 1252, 1570, 2496, 3315, 3846 |
| MhlI | GDGCHC | 3 cut(s) | 2340, 2751, 3008 |
| MlyI | GAGTC | 6 cut(s) | 938, 1848, 2464, 2521, 3685, 3749 |
| MmeI | TCCRAC | 8 cut(s) | 83, 1531, 1569, 1620, 1816, 2958, 3531, 3633 |
| Mph1103I | ATGCAT | 1 cut(s) | 1431 |
| MroXI | GAANNNNTTC | 2 cut(s) | 365, 2435 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1870 |
| MspA1I | CMGCKG | 3 cut(s) | 1133, 2000, 3176 |
| MspI | CCGG | 4 cut(s) | 259, 1574, 1935, 3491 |
| MspR9I | CCNGG | 5 cut(s) | 411, 963, 2367, 3466, 3492 |
| MunI | CAATTG | 1 cut(s) | 1700 |
| Mva1269I | GAATGC | 2 cut(s) | 385, 2060 |
| MvaI | CCWGG | 4 cut(s) | 411, 963, 2367, 3466 |
| MvnI | CGCG | 1 cut(s) | 756 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 106, 457, 466, 1974, 3535 |
| NciI | CCSGG | 1 cut(s) | 3492 |
| NlaIV | GGNNCC | 3 cut(s) | 1254, 2489, 3305 |
| NmuCI | GTSAC | 5 cut(s) | 560, 1627, 1893, 2467, 3127 |
| NsiI | ATGCAT | 1 cut(s) | 1431 |
| NspI | RCATGY | 4 cut(s) | 217, 673, 936, 2544 |
| NspV | TTCGAA | 1 cut(s) | 2723 |
| PaeI | GCATGC | 1 cut(s) | 673 |
| PaeR7I | CTCGAG | 1 cut(s) | 1899 |
| PciI | ACATGT | 1 cut(s) | 2540 |
| PciSI | GCTCTTC | 1 cut(s) | 1506 |
| PctI | GAATGC | 2 cut(s) | 385, 2060 |
| PdmI | GAANNNNTTC | 2 cut(s) | 365, 2435 |
| PfeI | GAWTC | 6 cut(s) | 832, 1153, 1235, 1622, 2846, 3502 |
| PfoI | TCCNGGA | 2 cut(s) | 409, 3464 |
| PinAI | ACCGGT | 1 cut(s) | 1934 |
| PkrI | GCNGC | 7 cut(s) | 1005, 1375, 2392, 3000, 3652, 3802, 3861 |
| PleI | GAGTC | 6 cut(s) | 938, 1847, 2464, 2521, 3685, 3748 |
| PpsI | GAGTC | 6 cut(s) | 938, 1847, 2464, 2521, 3685, 3748 |
| Ppu21I | YACGTR | 1 cut(s) | 796 |
| PscI | ACATGT | 1 cut(s) | 2540 |
| PsiI | TTATAA | 1 cut(s) | 848 |
| Psp124BI | GAGCTC | 1 cut(s) | 2751 |
| Psp6I | CCWGG | 4 cut(s) | 409, 961, 2365, 3464 |
| PspEI | GGTNACC | 1 cut(s) | 1893 |
| PspFI | CCCAGC | 4 cut(s) | 1129, 1133, 2447, 2901 |
| PspGI | CCWGG | 4 cut(s) | 409, 961, 2365, 3464 |
| PspN4I | GGNNCC | 3 cut(s) | 1254, 2489, 3305 |
| PspPI | GGNCC | 3 cut(s) | 838, 1294, 1339 |
| PspXI | VCTCGAGB | 1 cut(s) | 1899 |
| PstI | CTGCAG | 2 cut(s) | 1378, 1587 |
| PstNI | CAGNNNCTG | 2 cut(s) | 196, 3743 |
| PsuI | RGATCY | 7 cut(s) | 277, 530, 1252, 1570, 2496, 3315, 3846 |
| PvuII | CAGCTG | 3 cut(s) | 1133, 2000, 3176 |
| RsaI | GTAC | 4 cut(s) | 555, 691, 2680, 3877 |
| RsaNI | GTAC | 4 cut(s) | 554, 690, 2679, 3876 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1870 |
| SacI | GAGCTC | 1 cut(s) | 2751 |
| SalI | GTCGAC | 1 cut(s) | 1185 |
| SapI | GCTCTTC | 1 cut(s) | 1506 |
| SatI | GCNGC | 7 cut(s) | 1004, 1374, 2391, 2999, 3651, 3801, 3860 |
| Sau96I | GGNCC | 3 cut(s) | 838, 1294, 1339 |
| SchI | GAGTC | 6 cut(s) | 938, 1848, 2464, 2521, 3685, 3749 |
| ScrFI | CCNGG | 5 cut(s) | 411, 963, 2367, 3466, 3492 |
| SduI | GDGCHC | 3 cut(s) | 2340, 2751, 3008 |
| SfcI | CTRYAG | 4 cut(s) | 1279, 1374, 1583, 2400 |
| Sfr274I | CTCGAG | 1 cut(s) | 1899 |
| SfuI | TTCGAA | 1 cut(s) | 2723 |
| SinI | GGWCC | 3 cut(s) | 838, 1294, 1339 |
| SlaI | CTCGAG | 1 cut(s) | 1899 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1870 |
| SmlI | CTYRAG | 2 cut(s) | 1899, 2060 |
| SmoI | CTYRAG | 2 cut(s) | 1899, 2060 |
| SnaBI | TACGTA | 1 cut(s) | 796 |
| SpeI | ACTAGT | 1 cut(s) | 806 |
| SphI | GCATGC | 1 cut(s) | 673 |
| SsiI | CCGC | 9 cut(s) | 155, 460, 886, 930, 2259, 2931, 2998, 3651, 3702 |
| SspI | AATATT | 1 cut(s) | 3409 |
| SspMI | CTAG | 6 cut(s) | 807, 1826, 2582, 2753, 3257, 3843 |
| SstI | GAGCTC | 1 cut(s) | 2751 |
| StyD4I | CCNGG | 5 cut(s) | 409, 961, 2365, 3464, 3490 |
| StyI | CCWWGG | 1 cut(s) | 1883 |
| TaaI | ACNGT | 9 cut(s) | 19, 151, 1148, 1414, 2083, 2608, 2945, 3035, 3198 |
| TaiI | ACGT | 4 cut(s) | 798, 983, 1070, 1350 |
| TaqI | TCGA | 8 cut(s) | 138, 823, 1186, 1900, 2052, 2723, 3200, 3379 |
| TatI | WGTACW | 2 cut(s) | 553, 689 |
| TauI | GCSGC | 2 cut(s) | 3001, 3653 |
| TfiI | GAWTC | 6 cut(s) | 832, 1153, 1235, 1622, 2846, 3502 |
| TscAI | CASTG | 4 cut(s) | 1970, 2611, 2950, 3870 |
| TseFI | GTSAC | 5 cut(s) | 560, 1627, 1893, 2467, 3127 |
| TseI | GCWGC | 5 cut(s) | 1003, 1373, 2390, 3800, 3859 |
| Tsp45I | GTSAC | 5 cut(s) | 560, 1627, 1893, 2467, 3127 |
| TspRI | CASTG | 4 cut(s) | 1970, 2611, 2950, 3870 |
| VpaK11BI | GGWCC | 3 cut(s) | 838, 1294, 1339 |
| XceI | RCATGY | 4 cut(s) | 217, 673, 936, 2544 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1085 |
| XhoI | CTCGAG | 1 cut(s) | 1899 |
| XmiI | GTMKAC | 1 cut(s) | 1186 |
| XmnI | GAANNNNTTC | 2 cut(s) | 365, 2435 |
| XspI | CTAG | 6 cut(s) | 807, 1826, 2582, 2753, 3257, 3843 |
| Zsp2I | ATGCAT | 1 cut(s) | 1431 |